Article Dans Une Revue Taxon, the journal of the International Association for Plant Taxonomy Année : 2017

A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny

Nasim Azani (1) , Marielle Babineau (2, 3) , C. Donovan Bailey (4) , Hannah Banks (5) , Ariane R. Barbosa (6) , Rafael Barbosa Pinto (7) , James S. Boatwright (8) , Leonardo M. Borges (9) , Gillian K. Brown (10) , Anne Bruneau (2, 3) , Elisa Candido (7) , Domingos Cardoso (11) , Kuo-Fang Chung (12) , Ruth P. Clark (5) , Adilva de S. Conceicao (13) , Michael Crisp (14) , Paloma Cubas (15) , Alfonso Delgado-Salinas (16) , Kyle G. Dexter (17) , Jeff J. Doyle (18) , Jérôme Duminil (19) , Ashley N. Egan (20) , Manuel de La Estrella (5) , Marcus J. Falcao (21) , Dmitry A. Filatov (22) , Ana Paula Fortuna-Perez (9) , Renee H. Fortunato (23, 24) , Edeline Gagnon (2, 3) , Peter Gasson (5) , Juliana Gastaldello Rando (25) , Ana Maria Goulart de Azevedo Tozzi (7) , Bee Gunn (14) , David Harris (5) , Elspeth Haston (5) , Julie A. Hawkins (26) , Patrick S. Herendeen (27) , Colin E. Hughes (28) , Joao R. V. Iganci , Firouzeh Javadi (29) , Sheku Alfred Kanu (30) , Shahrokh Kazempour-Osaloo (31) , Geoffrey C. Kite (5) , Bente B. Klitgaard (5) , Fabio J. Kochanovski (7) , Erik J. M. Koenen (28) , Lynsey Kovar (4) , Matt Lavin (32) , Marianne Le Roux (33, 34) , Gwilym P. Lewis (5) , Haroldo C. de Lima (21) , Maria Cristina Lopez-Roberts (6) , Barbara Mackinder , Vitor Hugo Maia (35) , Valéry Malécot (36) , Vidal F. Mansano (21) , Brigitte Marazzi (37) , Sawai Mattapha (26) , Joseph T. Miller (38) , Chika Mitsuyuki (4) , Tania Moura (39) , Daniel J. Murphy (40) , Madhugiri Nageswara-Rao (4) , Bruno Nevado (22) , Danilo Neves (5) , Dario I. Ojeda (19) , R. Toby Pennington , Darirn E. Prado (41) , Gerhard Prenner (5) , Luciano Paganucci de Queiroz (6) , Gustavo Ramos (11) , Fabiana L. Ranzato Filardi (21) , Petala G. Ribeiro (6) , Maria de Lourdes Rico-Arce (5) , Michael J. Sanderson (42) , Juliana Santos-Silva (13) , Wallace M. B. Sao-Mateus (43) , Marcos J. S. Silva (44) , Marcelo F. Simon (45) , Carole Sinou (2, 3) , Cristiane Snak (6) , Elvia R. de Souza (13) , Janet Sprent (22) , Kelly P. Steele , Julia E. Steier , Royce Steeves (2, 3) , Charles H. Stirton (46) , Shuichiro Tagane (4) , Benjamin M. Torke (47) , Hironori Toyama (4) , Daiane Trabuco da Cruz (6) , Mohammad Vatanparast (20) , Jan J. Wieringa (48) , Michael Wink (49) , Martin F. Wojciechowski , Tetsukazu Yahara (4) , Tingshuang Yi (50) , Erin Zimmerman (2, 3)
1 Department of Plant Science
2 Institut de Recherche en Biologie Végétale
3 Département de Sciences Biologiques
4 Department of Biology
5 Royal Botanic Gardens [Kew]
6 Departamento Ciências Biológicas
7 Departamento de Biologia Vegetal
8 Department of Biodiversity and Conservation Biology
9 Departamento de Botânica
10 School of BioSciences, Australia and Queensland Herbarium
11 Instituto de Biologia
12 School of Forestry and Resource Conservation
13 Departamento de Educação, Campus VIII
14 Research School of Biology
15 Departamento de Biología Vegetal II
16 Instituto de Biología – Botánica
17 School of GeoSciences
18 Plant Biology Department
19 Service Évolution Biologique et Écologie
20 Department of Botany, Smithsonian Institution
21 Jardim Botânico do Rio de Janeiro
22 Department of Plant Sciences
23 Instituto de Recursos Biologicos
24 University of Morón
25 Ciências Ambientais
26 School of Biological Sciences [Reading]
27 Chicago Botanic Garden
28 Department of Systematic and Evolutionary Botany
29 Institute of Decision Science for a Sustainable Society
30 Department of Agriculture and Animal Health
31 Department of Plant Biology
32 Department Plant Sciences and Plant Pathology [Bozeman]
33 South African National Biodiversity Institute
34 DBPB - Department of Botany and Plant Biotechnology
35 Departamento de Biologia
36 IRHS - Institut de Recherche en Horticulture et Semences
37 Museo cantonale di storia naturale [Lugano]
38 Office of International Science and Engineering
39 Missouri Botanical Garden
40 Plant Sciences and Biodiversity
41 IICAR - Instituto de Investigaciones en Ciencias Agrarias de Rosario [Zavalla]
42 Faculty of Biology - Department of Ecology and Evolutionary Biology
43 Sistemática e Evolução
44 Departamento de Botânica, Instituto de Ciências Biológicas
45 CENARGEN - Embrapa Recursos Genéticos e Biotecnologia = Embrapa Genetic Resources & Biotechnology
46 Department of Biological Sciences, Bolus Herbarium
47 Institute of Systematic Botany
48 Naturalis Biodiversity Center [Leiden]
49 Institute of Pharmacy and Molecular Biotechnology
50 KIB - Kunming Institute of Botany [CAS]
Joao R. V. Iganci
  • Fonction : Auteur
Barbara Mackinder
  • Fonction : Auteur
R. Toby Pennington
  • Fonction : Auteur
Kelly P. Steele
  • Fonction : Auteur
Julia E. Steier
  • Fonction : Auteur
Martin F. Wojciechowski
  • Fonction : Auteur

Résumé

The classification of the legume family proposed here addresses the long-known non-monophyly of the traditionally recognised subfamily Caesalpinioideae, by recognising six robustly supported monophyletic subfamilies. This new classification uses as its framework the most comprehensive phylogenetic analyses of legumes to date, based on plastid matK gene sequences, and including near-complete sampling of genera (698 of the currently recognised 765 genera) and ca. 20% (3696) of known species. The matK gene region has been the most widely sequenced across the legumes, and in most legume lineages, this gene region is sufficiently variable to yield well-supported clades. This analysis resolves the same major clades as in other phylogenies of whole plastid and nuclear gene sets (with much sparser taxon sampling). Our analysis improves upon previous studies that have used large phylogenies of the Leguminosae for addressing evolutionary questions, because it maximises generic sampling and provides a phylogenetic tree that is based on a fully curated set of sequences that are vouchered and taxonomically validated. The phylogenetic trees obtained and the underlying data are available to browse and download, facilitating subsequent analyses that require evolutionary trees. Here we propose a new community-endorsed classification of the family that reflects the phylogenetic structure that is consistently resolved and recognises six subfamilies in Leguminosae: a recircumscribed Caesalpinioideae DC., Cercidoideae Legume Phylogeny Working Group (stat. nov.), Detarioideae Burmeist., Dialioideae Legume Phylogeny Working Group (stat. nov.), Duparquetioideae Legume Phylogeny Working Group (stat. nov.), and Papilionoideae DC. The traditionally recognised subfamily Mimosoideae is a distinct clade nested within the recircumscribed Caesalpinioideae and is referred to informally as the mimosoid clade pending a forthcoming formal tribal and/or clade-based classification of the new Caesalpinioideae. We provide a key for subfamily identification, descriptions with diagnostic charactertistics for the subfamilies, figures illustrating their floral and fruit diversity, and lists of genera by subfamily. This new classification of Leguminosae represents a consensus view of the international legume systematics community; it invokes both compromise and practicality of use.
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hal-01604992 , version 1 (15-03-2019)

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Nasim Azani, Marielle Babineau, C. Donovan Bailey, Hannah Banks, Ariane R. Barbosa, et al.. A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny. Taxon, the journal of the International Association for Plant Taxonomy, 2017, 66 (1), pp.44-77. ⟨10.12705/661.3⟩. ⟨hal-01604992⟩
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