First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data - Laboratoire des Interactions Plantes Microbes Environnement Accéder directement au contenu
Article Dans Une Revue (Data Paper) Data in Brief Année : 2023

First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data

Résumé

Common bean (Phaseolus vulgaris L.) is the most impor- tant grain legume for direct human consumption world- wide. Flageolet bean originates from France and presents typ- ical organoleptic properties, including the remarkable fea- ture of having small pale green colored seeds. Here, we re- port the whole-genome data, assembly and annotation of the flageolet bean accession ‘Flavert’. High molecular weight DNA and RNA were extracted and subjected to long-read se- quencing using PacBio Sequel II platform. The genome con- sisted of 566,238,753 bp assembled in 13 molecules, includ- ing 11 chromosomes plus the mitochondrial and chloroplastic genomes. Annotation predicted 29,549 protein coding genes and 6,958 non-coding RNA. This high-quality genome (99.2% BUSCO completeness) represents a valuable data set for fur- ther genomic and genetic studies on common bean and more generally on legumes. To our knowledge, this is the first whole-genome sequence of a common bean accession orig- inating from Europe.
Fichier principal
Vignette du fichier
2023_Carrere_Data.in.Brief.pdf (273.63 Ko) Télécharger le fichier
Origine : Fichiers éditeurs autorisés sur une archive ouverte
licence : CC BY NC ND - Paternité - Pas d'utilisation commerciale - Pas de modification

Dates et versions

hal-04089846 , version 1 (05-05-2023)

Licence

Paternité - Pas d'utilisation commerciale - Pas de modification

Identifiants

Citer

Sébastien Carrère, Baptiste Mayjonade, David Lalanne, Sylvain Gaillard, Jérôme Verdier, et al.. First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data. Data in Brief, 2023, 48, pp.109182. ⟨10.1016/j.dib.2023.109182⟩. ⟨hal-04089846⟩
50 Consultations
9 Téléchargements

Altmetric

Partager

Gmail Facebook X LinkedIn More