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Welcome to the PROSE unit Environmental biOtechnology PRoceSses HAL collection

The PROSE unit is conducting research on environmental biotechnologies, through scales spanning from the microbial community up to the whole process (wastewater treatment plants, anaerobic digesters, bioelectrochemical processes for biorefinery, …), addressing key societal issues of sustainable development, circular economy and bioeconomy. Affiliated with TRANSFORM and MICA divisions, our unit performs a transdisciplinary approach based on microbial ecology, biogeochemistry, process engineering, physical measurement as well as modelling.

Pilleriin Peets, Aristeidis Litos, Kai Duehrkop, Daniel Rios Garza, Justin J.J. van der Hooft, et al.. Chemistry-based vectors map the chemical space of natural biomes from untargeted mass spectrometry data. 2025. ⟨hal-04915064⟩
Théodore Bouchez, Bin Liu, Daniel Rios Garza. Healthy gut microbiomes are host-controllable microbiomes. Frontiers in Microbiology, 2025, 15, ⟨10.3389/fmicb.2024.1497083⟩. ⟨hal-04872524⟩
Hélène Guyard, Stéphanie Prost-Boucle, Julien Sudre, Sylvain Moreau, Arnold Imig, et al.. An open source ultrasonic flowmeter for monitoring the input/output flow rates of wastewater treatment plants. HardwareX, 2025, 21, pp.e00613. ⟨10.1016/j.ohx.2024.e00613⟩. ⟨hal-04893611⟩
N Loukili, L Jossic, D Blésès, M Oliveira, Y Fayolle, et al.. Impact of cationic polyacrylamide degradation on flocculation in wastewater treatment. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 2024, 702 (1), pp.134975. ⟨10.1016/j.colsurfa.2024.134975⟩. ⟨hal-04748797⟩
Meine D Boer, Chrats Melkonian, Haris Zafeiropoulos, Andreas F Haas, Daniel R Garza, et al.. Improving genome-scale metabolic models of incomplete genomes with deep learning. iScience, 2024, 27, ⟨10.1016/j.isci.2024.111349⟩. ⟨hal-04810527⟩
Rémi Clément, Stéphanie Prost-Boucle, Sylvain Moreau, Camille Arnault. PLAN DE GESTION DE DONNEES Projet SETIER II. Plan de gestion de donnée du projet SETIER II, pp.1-26, 2024, ⟨10.17180/1b85-mm70⟩. ⟨hal-04712649⟩
Cédric Midoux, Olivier Rué, Olivier Chapleur, Ariane Bize, Valentin Loux, et al.. Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data. 2024, ⟨swh:1:rel:35d2caacc87474efa1f1e277f5eb13352962793d⟩. ⟨hal-04304559v2⟩
Vuong Quoc Hoang Ngo, Maximilien Sotomski, Angeline Guenne, Mahendra Mariadassou, Mart Krupovic, et al.. Establishing Host–Virus Link Through Host Metabolism: Viral DNA SIP Validation Using T4 Bacteriophage and E. coli. Current Microbiology, 2024, 81 (9), pp.266. ⟨10.1007/s00284-024-03774-x⟩. ⟨pasteur-04647500⟩
Xiaoqing Wang, Vincent Dürr, Angéline Guenne, Nadine Derlet, Chrystelle Bureau, et al.. Generic mitigating and promoting effect of zeolite on anaerobic digestion: Physicochemical and metataxonomic data. Data in Brief, 2024, 55, pp.110748. ⟨10.1016/j.dib.2024.110748⟩. ⟨hal-04903224⟩
Emilie Fernandez, Ariane Bize, Elie Desmond-Le Quéméner, Virginie Rossard, Eric Latrille. Combining the analysis of omics data and bioprocess data in environmental biorefineries. JOBIM 2024, Jun 2024, Toulouse, France. . ⟨hal-04664121⟩

Welcome to the PROSE unit Environmental biOtechnology PRoceSses HAL collection

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