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, The establishment of databases and interfaces was funded by Agence Nationale de la Recherche (GnpAnnot project; ANR-07-GPLA-051G). Wholegenome effector analysis was funded by ANR
, Recombination analysis and P.B. were funded by ANR
S acknowledges support from the U.S. National Science Foundation, grant number DEB-0717476. B.M.T. was supported in part by the U.S. National Science Foundation, grant number IOS-0924861. Thanks are due to INRA-SPE department, the 'Leptosphaeria maculans' scientific and applied community, J.W ,
,
coordinated genome sequencing, annotation and data analyses, and made equivalent contributions as senior authors ,
B was responsible for DNA production; P.W. and J.W. coordinated the sequencing ,
performed the sequencing and assembled the genome ,
was responsible for annotation pipelines, databases and interfaces ,
did the ab initio annotation of gene models ,
did the cDNA clustering, defined the training set for ab initio gene finder steps and inserted annotation data in the database. Genome statistics were performed by ,
identified and designed mini-and microsatellite markers ,
,
performed mesosynteny and RIPCAL analyses; A.J.C. and K.M. hybridized electrokaryotypes and annotated NRPSs and PKSs ,
,
estimated time for TE transposition events ,
carried out RXLR analysis of effector candidates ,
and I.F. performed expression analysis of effectors by reverse transcription-PCR and quantitative reverse transcription-PCR ,
URL : https://hal.archives-ouvertes.fr/pasteur-00206322
contributed to comparative genomics approaches. L.D. analysed isochores-like blocks and contributed to comparative analysis with those of mammals ,