F. Arreguín-sánchez, Ecosystem dynamics under " top-down " and " bottom-up " control situations generated by intensive harvesting rates, Hidrobiológica, vol.21, issue.3, pp.323-332, 2011.

V. Christensen, Ecosystem maturity ??? towards quantification, Ecological Modelling, vol.77, issue.1, pp.3-32, 1995.
DOI : 10.1016/0304-3800(93)E0073-C

V. Christensen, L. Garces, G. Silvestre, and P. D. , Fisheries Impact on the South China Sea Large Marine Ecosystem: A Preliminary Analysis using Spatially-Explicit Methodology. Assessment, management and future directions for coastal fisheries in Asian countries, pp.51-62, 2003.

V. Christensen, S. Guénette, J. Heymans, C. Walters, R. Watson et al., Hundred-year decline of North Atlantic predatory fishes, Fish and Fisheries, vol.225, issue.1, pp.1-24, 2003.
DOI : 10.1038/35107050

V. Christensen and P. D. , ECOPATH II ??? a software for balancing steady-state ecosystem models and calculating network characteristics, Ecological Modelling, vol.61, issue.3-4, pp.3-4, 1992.
DOI : 10.1016/0304-3800(92)90016-8

V. Christensen and P. D. , Flow characteristics of aquatic ecosystems, Trophic models of aquatic ecosystems. ICLARM Conf. Proc. 26. The WorldFish Center, pp.338-352, 1993.

V. Christensen, C. Walters, R. Ahrens, J. Alder, J. Buszowski et al., Database-driven models of the world's Large Marine Ecosystems, Ecological Modelling, vol.220, issue.17, 1984.
DOI : 10.1016/j.ecolmodel.2009.04.041

V. Christensen, C. Walters, D. Pauly, and R. Forrest, Ecopath with Ecosim version 6 -User Guide. Lenfest Ocean Futures Project. 235 p. Available at: ftp://ftp.fisheries.ubc.ca, p.5, 2008.
DOI : 10.2495/978-1-84564-207-5/05

V. Christensen and C. Walters, Ecopath with Ecosim: methods, capabilities and limitations, Ecological Modelling, vol.172, issue.2-4, pp.109-139, 2004.
DOI : 10.1016/j.ecolmodel.2003.09.003

M. Coll and S. Libralato, Contributions of food web modelling to the ecosystem approach to marine resource management in the Mediterranean Sea, Fish and Fisheries, vol.3, issue.1, pp.60-88, 2012.
DOI : 10.1111/j.1467-2979.2011.00420.x

M. Coll, J. Navarro, R. Olson, and V. Christensen, press) Assessing the trophic position and ecological role of squids in marine ecosystems by means of food-web models. Deep Sea Research Part II: Topical Studies in Oceanography

M. Colléter, J. Guitton, and D. Gascuel, Ecopath models database. Ecopath International Research and Development Consortium. Oral presentation (Edinburgh), 2012.

M. Colléter, J. Guitton, and D. Gascuel, An Introduction to the EcoTroph R package: Analyzing aquatic ecosystem trophic network, The R Journal, vol.5, issue.1, pp.98-107, 2013.

R. Dalgleish, E. Molero, R. Kidd, M. Jansen, D. Past et al., Solving bottlenecks in data sharing in the life sciences, Human Mutation, vol.33, issue.10, pp.1494-1496, 2012.
DOI : 10.1002/humu.22123

J. Feng, H. Wang, D. Huang, and S. Li, Alternative attractors in marine ecosystems: A comparative analysis of fishing effects, Ecological Modelling, vol.195, issue.3-4, pp.3-4, 2006.
DOI : 10.1016/j.ecolmodel.2005.11.033

D. Gascuel, The trophic-level based model: A theoretical approach of fishing effects on marine ecosystems, Ecological Modelling, vol.189, issue.3-4, pp.3-4, 2005.
DOI : 10.1016/j.ecolmodel.2005.03.019

D. Gascuel, S. Guénette, and P. D. , The trophic-level-based ecosystem modelling approach: theoretical overview and practical uses, ICES Journal of Marine Science, vol.68, issue.7, pp.1403-1416, 2011.
DOI : 10.1093/icesjms/fsr062
URL : https://hal.archives-ouvertes.fr/hal-00730160

D. Gascuel, L. Morissette, M. Palomares, and V. Christensen, Trophic flow kinetics in marine ecosystems: Toward a theoretical approach to ecosystem functioning, Ecological Modelling, vol.217, issue.1-2, pp.33-47, 2008.
DOI : 10.1016/j.ecolmodel.2008.05.012

D. Gascuel and P. D. , EcoTroph: Modelling marine ecosystem functioning and impact of fishing, Ecological Modelling, vol.220, issue.21, pp.2885-2898, 2009.
DOI : 10.1016/j.ecolmodel.2009.07.031
URL : https://hal.archives-ouvertes.fr/hal-01453846

D. Gascuel, L. Tremblay-boyer, and P. D. , EcoTroph (ET): a trophic level based software for assessing the impacts of fishing on aquatic ecosystems The Fisheries Centre, Fisheries Centre Research Reports, vol.17, issue.82, 2009.

S. Hampton, C. Strasser, J. Tewksbury, W. Gram, A. Budden et al., Big data and the future of ecology, Frontiers in Ecology and the Environment, vol.3, issue.3, pp.156-162, 2013.
DOI : 10.1126/science.134.3473.161

S. Kelling, W. Hochachka, D. Fink, M. Riedewald, R. Caruana et al., Data-intensive Science: A New Paradigm for Biodiversity Studies, BioScience, vol.59, issue.7, pp.613-620, 2009.
DOI : 10.1525/bio.2009.59.7.12

L. Quesne, W. Arreguín-sánchez, F. Albañez-lucero, M. Cheng, H. et al., Analysing ecosystem effects of selected marine protected areas with Ecospace spatial ecosystem models The Fisheries Centre, Fisheries Centre Research Reports, vol.16, issue.2, 2008.

S. Libralato, V. Christensen, and P. D. , A method for identifying keystone species in food web models, Ecological Modelling, vol.195, issue.3-4, pp.153-171, 2006.
DOI : 10.1016/j.ecolmodel.2005.11.029

S. Libralato, M. Coll, S. Tudela, I. Palomera, and F. Pranovi, Novel index for quantification of ecosystem effects of fishing as removal of secondary production, Marine Ecology Progress Series, vol.355, pp.107-129, 2008.
DOI : 10.3354/meps07224

S. Lluch-cota, A. Parés-sierra, V. Magaña-rueda, F. Arreguín-sánchez, G. Bazzino et al., Changing climate in the Gulf of California, Progress in Oceanography, vol.87, issue.1-4, pp.1-4, 2010.
DOI : 10.1016/j.pocean.2010.09.007

W. Michener and M. Jones, Ecoinformatics: supporting ecology as a data-intensive science, Trends in Ecology & Evolution, vol.27, issue.2, pp.85-93, 2012.
DOI : 10.1016/j.tree.2011.11.016

L. Morissette, Complexity, cost and quality of ecosystem models and their impact on resilience: a comparative analysis with emphasis on marine mammals and the gulf of St, 2007.

D. Pauly, Anecdotes and the shifting baseline syndrome of fisheries, Trends in Ecology & Evolution, vol.10, issue.10, p.430, 1995.
DOI : 10.1016/S0169-5347(00)89171-5

D. Pauly, F. Arreguín-sanchez, J. Browder, V. Christensen, S. Manikchand-heileman et al., Toward a stratified mass-balance model of trophic fluxes in the Gulf of Mexico Large Marine Ecosystem The Gulf of Mexico Large Marine Ecosystem: Assessment, Sustainability, and Management, Blackwell Science, pp.278-293, 1999.

D. Pauly and V. Christensen, Stratified models of large marine ecosystems: a general approach, and an application to the South China Sea Stress, mitigation and sustainability of large marine ecosystems, pp.148-174, 1993.

D. Pauly, V. Christensen, and C. Walters, Ecopath, Ecosim, and Ecospace as tools for evaluating ecosystem impact of fisheries, ICES Journal of Marine Science, vol.57, issue.3, pp.697-706, 2000.
DOI : 10.1006/jmsc.2000.0726

D. Pauly, W. Graham, S. Libralato, L. Morissette, and M. Palomares, Jellyfish in ecosystems, online databases, and ecosystem models, Hydrobiologia, vol.153, issue.7, pp.67-85, 2009.
DOI : 10.1007/s10750-008-9583-x

H. Pérez-españa and F. Arreguín-sánchez, Complexity related to behavior of stability in modeled coastal zone ecosystems, Aquatic Ecosystem Health and Management, vol.2, issue.2, pp.129-135, 1999.
DOI : 10.1016/S1463-4988(99)00021-4

H. Pérez-españa and F. Arreguín-sánchez, An inverse relationship between stability and maturity in models of aquatic ecosystems, Ecological Modelling, vol.145, issue.2-3, pp.189-196, 2001.
DOI : 10.1016/S0304-3800(01)00390-8

H. Piwowar, R. Day, and D. Fridsma, Sharing Detailed Research Data Is Associated with Increased Citation Rate, PLoS ONE, vol.293, issue.3, p.308, 2007.
DOI : 10.1371/journal.pone.0000308.s004
URL : http://doi.org/10.1371/journal.pone.0000308

J. Polovina, Model of a coral reef ecosystem, Coral Reefs, vol.290, issue.1, pp.1-11, 1984.
DOI : 10.1007/BF00306135

O. Reichman, M. Jones, and M. Schildhauer, Challenges and Opportunities of Open Data in Ecology, Science, vol.331, issue.6018, pp.703-705, 2011.
DOI : 10.1126/science.1197962

L. Salcido-guevara, Estructura y flujos de biomasa en un ecosistema bentonico explotado en el Sur de Sinaloa, Mexico. MSc Thesis, Instituto Politécnico Nacional, Centro Interdisciplinario de Ciencas Marinas, p.5, 2006.

L. Salcido-guevara, F. Arreguín-sánchez, L. Palmeri, and A. Barausse, Metabolic scaling regularity in aquatic ecosystems, CICIMAR Oceánides, vol.27, issue.2, pp.13-26, 2012.

A. Thessen and D. Patterson, Data issues in the life sciences, ZooKeys, vol.7, issue.150, pp.15-51, 2011.
DOI : 10.1186/1741-7015-9-17

L. Vidal-hernandez and P. D. , Integration of subsystems models as a tool toward describing feeding interactions and fisheries impacts in a large marine ecosystem, the Gulf of Mexico, Ocean & Coastal Management, vol.47, issue.11-12, pp.709-725, 2004.
DOI : 10.1016/j.ocecoaman.2004.12.009

C. Walters and V. Christensen, Adding realism to foraging arena predictions of trophic flow rates in Ecosim ecosystem models: Shared foraging arenas and bout feeding, Ecological Modelling, vol.209, issue.2-4, pp.2-4, 2007.
DOI : 10.1016/j.ecolmodel.2007.06.025

C. Walters, V. Christensen, W. Walters, and R. K. , Representation of multistanza life histories in Ecospace models for spatial organization of ecosystem trophic interaction patterns, Bulletin of Marine Science, vol.86, issue.2, pp.439-459, 2010.

C. Walters, S. Martell, V. Christensen, and B. Mahmoudi, An Ecosim Model for Exploring Gulf of Mexico Ecosystem Management Options: Implications of Including Multistanza Life-History Models for Policy Predictions, Bulletin of Marine Science, vol.83, issue.1, pp.251-271, 2008.

C. Walters, D. Pauly, and V. Christensen, Ecospace: Prediction of Mesoscale Spatial Patterns in Trophic Relationships of Exploited Ecosystems, with Emphasis on the Impacts of Marine Protected Areas, Ecosystems, vol.2, issue.6, pp.539-554, 1999.
DOI : 10.1007/s100219900101

C. Walters, V. Christensen, S. Martell, and J. Kitchell, Possible ecosystem impacts of applying MSY policies from single-species assessment, ICES Journal of Marine Science, vol.62, issue.3, pp.558-568, 2005.
DOI : 10.1016/j.icesjms.2004.12.005

D. Zeller, R. Froese, and P. D. , On losing and recovering fisheries and marine science data, Marine Policy, vol.29, issue.1, pp.69-73, 2005.
DOI : 10.1016/j.marpol.2004.02.003
URL : http://oceanrep.geomar.de/5295/1/319_Zeller_2005_OnLosingAndRecoveringFisheries_Artzeit_pubid6469.pdf

S. Manickchand-heileman, L. Soto, and E. Escobar, A Preliminary Trophic Model of the Continental Shelf, South-western Gulf of Mexico, Estuarine, Coastal and Shelf Science, vol.46, issue.6, pp.885-899, 1998.
DOI : 10.1006/ecss.1997.0324

M. Gasalla and C. Rossi-wongtschowski, Contribution of ecosystem analysis to investigating the effects of changes in fishing strategies in the South Brazil Bight coastal ecosystem, Ecological Modelling, vol.172, issue.2-4, pp.283-306, 2004.
DOI : 10.1016/j.ecolmodel.2003.09.012

E. Bredesen, Krill and the Antarctic: Finding the Balance, pp.91-123, 2003.

M. Vasconcellos and M. Gasalla, Fisheries catches and the carrying capacity of marine ecosystems in southern Brazil, Fisheries Research, vol.50, issue.3, pp.279-295, 2001.
DOI : 10.1016/S0165-7836(00)00217-4

C. Savenkoff, H. Bourdages, D. Swain, S. Despatie, M. Hanson et al., Input data and parameter estimates for ecosystem models of the southern Gulf of St. Lawrence (mid-1980s and mid-1990s) Canadian Technical Report of Fisheries and Aquatic Sciences 2529, pp.111-125, 2004.

E. Vivekanandan, M. Srinath, V. Pillai, S. Immanuel, K. Kurup et al., Trophic Model of the Coastal Fisheries Ecosystem of the Southwest Coast of India, Assessment, Management and Future Directions of Coastal Fisheries in Asian Countries. WorldFish Center Conference Proceedings, pp.281-298, 2003.

J. Moreau, M. Villanueva, U. Amarasinghe, and F. Schiemer, Trophic Relationships and Possible Evolution of the Production under Various Fisheries Management Strategies in a Sri Lankan Reservoir, Reservoir and culturebased fisheries: Biology and Management. Australian Centre for International Agricultural Research, pp.201-214, 2001.

R. Christian and J. Luczkovich, Organizing and understanding a winter???s seagrass foodweb network through effective trophic levels, Ecological Modelling, vol.117, issue.1, pp.99-124, 1999.
DOI : 10.1016/S0304-3800(99)00022-8

S. Martell, A. Beattie, C. Walters, T. Nayar, and R. Briese, Simulating fisheries management strategies in the Strait of Georgia ecosystem using Ecopath and Ecosim The Use of Ecosystem Models to Investigate Multispecies Management Strategies for Capture Fisheries, Fisheries Centre Research Reports, vol.10, issue.2, pp.16-23, 2002.

J. Bradford-grieve, K. Probert, S. Nodder, D. Thompson, J. Hall et al., Pilot trophic model for subantarctic water over the Southern Plateau, New Zealand: a low biomass, high transfer efficiency system, Journal of Experimental Marine Biology and Ecology, vol.289, issue.2, pp.223-262, 2003.
DOI : 10.1016/S0022-0981(03)00045-5

L. Abarca-arenas and E. Valero-pacheco, Toward a Trophic Model of Tamiahua, a Coastal Lagoon in Mexico, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.181-185, 1993.

. Anon, Report of the Ecosystem Modeling Follow-up Workshop. Gulf Council, pp.108-133, 2007.

R. Rosado-solórzano, G. Del-próo, and S. , Preliminary trophic structure model for Tampamachoco lagoon, Veracruz, Mexico, Ecological Modelling, vol.109, issue.2, pp.141-154, 1998.
DOI : 10.1016/S0304-3800(98)00011-8

H. Liew and E. Chan, Ecopath model of a tropical shallow-water community in Malaysia, p.135, 1987.

S. Manickchand-heileman, F. Arreguín-sánchez, A. Lara-domínguez, and L. Soto, Energy flow and network analysis of Terminos Lagoon, SW Gulf of Mexico, Journal of Fish Biology, vol.264, issue.sa, pp.179-197, 1998.
DOI : 10.1086/283534

C. Mathews, Productivity and Energy Flows at All Trophic Levels in the River Thames, England: Mark 2, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.161-171, 1993.

M. Wolff, A trophic model for Tongoy Bay ???a system exposed to suspended scallop culture (Northern Chile), Journal of Experimental Marine Biology and Ecology, vol.182, issue.2, pp.149-168, 1994.
DOI : 10.1016/0022-0981(94)90048-5

J. Kolding, Trophic Interrelationships and Community Structure at Two Different Periods of Lake Turkana, Kenya: a Comparison Using the Ecopath II Box Model, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.116-123, 1993.

S. Opitz, A quantitative model of the trophic interactions in a Caribbean coral reef ecosystem, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.259-267, 1993.

R. Angelini and A. Agostinho, Food web model of the Upper Paran?? River Floodplain: description and aggregation effects, Ecological Modelling, vol.181, issue.2-3, pp.109-121, 2005.
DOI : 10.1016/j.ecolmodel.2004.06.025

L. Duarte and C. García, Trophic role of small pelagic fishes in a tropical upwelling ecosystem, Ecological Modelling, vol.172, issue.2-4, pp.323-338, 2004.
DOI : 10.1016/j.ecolmodel.2003.09.014

L. Duarte and C. García, Testing responses of a tropical shelf ecosystem to fisheries management strategies: a small-scale fishery from the Colombian Caribbean Sea The Use of Ecosystem Models to Investigate Multispecies Management Strategies for Capture Fisheries, Fisheries Centre Research Reports, vol.10, issue.2, pp.142-149, 2002.

C. Aravindan, Preliminary Trophic Model of Veli Lake, Southern India, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.87-89, 1993.

J. Mendoza, A preliminary biomass budget for the Northeastern Venezuela shelf ecosystem, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.285-297, 1993.

S. Pedersen and D. Zeller, A mass balance model for the West Greenland marine ecosystem, Fisheries Impacts on North Atlantic Ecosystems: Models and Analyses. Fisheries Centre Research Reports, pp.111-127, 2001.

A. Man, G. Silvestre, L. Garces, I. Stobutzki, M. Ahmed et al., Trophic Model of the Coastal Fisheries Ecosystem of the West Coast of Peninsular Malaysia, Assessment, Management and Future Directions of Coastal Fisheries in Asian Countries. WorldFish Center Conference Proceedings, pp.313-332, 2003.

L. Garces, A. Man, A. Ahmad, M. Mohamad-norizam, G. Silvestre et al., A trophic model of the coastal fisheries ecosystem off the West Coast of Sabah and Sarawak, Malaysia, Assessment, Management and Future Directions of Coastal Fisheries in Asian Countries. WorldFish Center Conference Proceedings, pp.333-352, 2003.

T. Okey, G. Vargo, S. Mackinson, M. Vasconcellos, B. Mahmoudi et al., Simulating community effects of sea floor shading by plankton blooms over the West Florida Shelf, Ecological Modelling, vol.172, issue.2-4, pp.339-359, 2004.
DOI : 10.1016/j.ecolmodel.2003.09.015

S. Pedersen, Multispecies interactions on the offshore West Greenland shrimp grounds, ICES CM, pp.26-150, 1994.

K. Aydin, V. Lapko, V. Radchenko, and P. Livingston, A comparison of the eastern Bering and western Bering Sea shelf and slope ecosystems through the use of mass-balance food web models, 2002.

J. Araújo, S. Mackinson, J. Ellis, and P. Hart, An Ecopath model of the western English Channel ecosystem with an exploration of its dynamic properties, Science Series, pp.45-152, 2005.

J. Araújo, S. Mackinson, R. Stanford, and P. Hart, Exploring fisheries strategies for the western English Channel using an ecosystem model, Ecological Modelling, vol.210, issue.4, pp.465-477, 2008.
DOI : 10.1016/j.ecolmodel.2007.08.015

F. Arreguín-sánchez, E. Valero-pacheco, and E. Chavez, A trophic box model of the coastal fish communities of the southwestern Gulf of Mexico, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.197-205, 1993.

F. Arreguín-sánchez, J. Seijo, and E. Valero-pacheco, An application of ECOPATH II to the North Continental Shelf Ecosystem of Yucatan, Mexico, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.269-278, 1993.

M. Colléter, D. Gascuel, J. Ecoutin, T. De-morais, and L. , Modelling trophic flows in ecosystems to assess the efficiency of marine protected area (MPA), a case study on the coast of S??n??gal, Ecological Modelling, vol.232, pp.1-13, 2012.
DOI : 10.1016/j.ecolmodel.2012.01.019

D. Pauly, Alaska Gyre model Mass-balance models of North-eastern Pacific ecosystems, Fisheries Centre Research Reports, vol.4, issue.1, pp.12-36, 1996.

P. Tudman, Modelling the trophic effects of fishing on a midshelf coral reef of the central Great Barrier Reef, p.158, 2001.

R. Angelini, M. Petrere, and . Jr, The Ecosystem of Broa Reservoir, Sao Paulo State, Brazil, as Described Using ECOPATH, Naga, The ICLARM Quarterly, vol.19, issue.2, pp.36-41, 1996.

C. Ainsworth, J. Heymans, T. Pitcher, and M. Vasconcellos, Ecosystem Models of Northern British Columbia for the Time Periods, Fisheries Centre Research Reports, vol.10, issue.4, pp.41-160, 1750.

M. Palomares, B. Yulianto, L. Puy, D. Bengen, and A. Belaud, A Preliminary Model of the Garonne River, ) Ecosystem in Spring Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.172-179, 1993.

F. Arreguín-sánchez, A. Hernández-herrera, M. Ramírez-rodríguez, and H. Pérez-españa, Optimal management scenarios for the artisanal fisheries in the ecosystem of La Paz Bay, Ecological Modelling, vol.172, pp.2-4, 2004.

P. Aliño, L. Mcmanus, J. Mcmanus, C. Nañola, . Jr et al., Initial parameter estimations of a coral reef flat ecosystem in Bolinao, Pangasinan, Northwestern Philippines, Trophic models of aquatic ecosystems. ICLARM Conference Proceedings, pp.252-258, 1993.

S. Manickchand-heileman, J. Mendoza-hill, A. Kong, and F. Arocha, A trophic model for exploring possible ecosystem impacts of fishing in the Gulf of Paria, between Venezuela and Trinidad, Ecological Modelling, vol.172, issue.2-4, pp.2-4, 2004.
DOI : 10.1016/j.ecolmodel.2003.09.013

N. Haggan and T. Pitcher, Ecosystem Simulation Models of Scotland's West Coast and Sea Lochs, Fisheries Centre Research Reports, vol.13, issue.4, pp.67-165, 2005.

S. Nurhakim, Marine Fisheries Resources of the North Coast of Central Java, Indonesia: An Ecosystem Analysis, pp.299-312, 2003.

S. Guevara and L. , Estructura y flujos de biomasa en un ecosistema bentonico explotado en el Sur de Sinaloa, p.170, 2006.

G. Lassalle, D. Gascuel, L. Loc-'h, F. Lobry, J. Pierce et al., An ecosystem approach for the assessment of fisheries impacts on marine top predators: the Bay of Biscay case study, ICES Journal of Marine Science, vol.69, issue.6, pp.925-938, 2012.
DOI : 10.1093/icesjms/fss049
URL : https://hal.archives-ouvertes.fr/hal-00840402

G. Lassalle, J. Lobry, L. Loc-'h, F. Bustamante, P. Certain et al., Lower trophic levels and detrital biomass control the Bay of Biscay continental shelf food web: Implications for ecosystem management, Progress in Oceanography, vol.91, issue.4, pp.561-575, 2011.
DOI : 10.1016/j.pocean.2011.09.002
URL : https://hal.archives-ouvertes.fr/hal-00644561

T. Pitcher, C. Ainsworth, and M. Bailey, Ecological and economic analyses of marine ecosystems in the bird's head seascape, Papua, Indonesia: I. Fisheries Centre Research Reports, pp.184-301, 2007.

C. Ainsworth, D. Varkey, and T. Pitcher, Ecosystem simulations supporting ecosystem-based fisheries management in the Coral Triangle, Indonesia, Ecological Modelling, vol.214, issue.2-4, pp.361-374, 2008.
DOI : 10.1016/j.ecolmodel.2008.02.039

J. Field, Application of ecosystem-based fishery management approaches in the northern California Current, p.408, 2004.

C. Ainsworth and R. Sumaila, ), Canadian Journal of Fisheries and Aquatic Sciences, vol.62, issue.5, pp.1104-1110, 2005.
DOI : 10.1139/f05-010

C. Albouy, D. Mouillot, D. Rocklin, J. Culioli, and L. Loc, Simulation of the combined effects of artisanal and recreational fisheries on a Mediterranean MPA ecosystem using a trophic model, Marine Ecology Progress Series, vol.412, pp.207-221, 2010.
DOI : 10.3354/meps08679

C. Bulman, Trophic webs and modelling of Australia's North West Shelf, pp.85-309, 2006.

C. Bulman, A. Butler, S. Condie, K. Ridgway, J. Koslow et al., A trophodynamic model for the Tasmanian Seamounts Marine Reserve: links between pelagic and deepwater ecosystems. CSIRO Marine Research, pp.37-310, 2002.

C. Bulman, S. Condie, D. Furlani, M. Cahill, N. Klaer et al., Trophic dynamics of the eastern shelf and slope of the south east fishery: impacts of and on the fishery. Final Report for Fisheries Research & Development Corporation, p.311, 2002.

A. Castro, Système de gestion des pêcheries du São Tome et Principe par Ecopath et Ecosim, Ecosystem-based fisheries management using Ecopath with Ecosim (EwE) software ? Report for 2nd Regional Workshop. Interim Guinea Current Commission / Guinea Current Large Marine Ecosystem Project, pp.126-132, 2011.

Z. Chen, Y. Qiu, and X. Jia, Quantitative model of trophic interactions in Beibu Gulf ecosystem in the northern South China Sea, Oceanologica Sinica, vol.25, issue.3, pp.116-124, 2006.

Z. Chen, Y. Qiu, X. Jia, and S. Xu, Using an Ecosystem Modeling Approach to Explore Possible Ecosystem Impacts of Fishing in the Beibu Gulf, Northern South China Sea, Ecosystems, vol.2, issue.2, pp.1318-1334, 2008.
DOI : 10.1007/s10021-008-9200-x

W. Cheung, Vulnerability of marine fishes to fishing: from global overview to the Northern South China Sea, p.354, 2007.

W. Cheung and T. Pitcher, A mass-balance model of the Falkland Islands fisheries and ecosystems, Modeling Antarctic Marine Ecosystems. Fisheries Centre Research Reports, pp.65-84, 2005.

V. Christensen, G. Reck, and J. Maclean, Proceedings of the INCO-DC Conference -Placing Fisheries in their Ecosystem Context. ACP-EU Fisheries Research Report 12, pp.79-318, 2002.

V. Christensen, L. Garces, G. Silvestre, P. D. Silvestre, G. Garces et al., Fisheries Impact on the South China Sea Large Marine Ecosystem: A Preliminary Analysis using Spatially-Explicit Methodology, Assessment, Management and Future Directions of Coastal Fisheries in Asian Countries. WorldFish Center Conference Proceedings 67, pp.51-62, 2003.

C. Montemayor and A. , The economic benefits of ecosystem-based marine recreation: implications for management and policy, pp.105-321, 2010.

M. Coll, I. Palomera, S. Tudela, and F. Sardà, Trophic flows, ecosystem structure and fishing impacts in the South Catalan Sea, Northwestern Mediterranean, Journal of Marine Systems, vol.59, issue.1-2, pp.63-96, 2006.
DOI : 10.1016/j.jmarsys.2005.09.001

M. Coll, A. Santojanni, I. Palomera, S. Tudela, and E. Arneri, An ecological model of the Northern and Central Adriatic Sea: Analysis of ecosystem structure and fishing impacts, Journal of Marine Systems, vol.67, issue.1-2, pp.119-154, 2007.
DOI : 10.1016/j.jmarsys.2006.10.002

M. Coll, I. Palomera, S. Tudela, and M. Dowd, Food-web dynamics in the South Catalan Sea ecosystem (NW Mediterranean) for 1978???2003, Ecological Modelling, vol.217, issue.1-2, pp.95-116, 2003.
DOI : 10.1016/j.ecolmodel.2008.06.013

M. Coll, A. Santojanni, I. Palomera, and E. Arneri, Food-web changes in the Adriatic Sea over the last three decades, Marine Ecology Progress Series, vol.381, pp.17-37, 2009.
DOI : 10.3354/meps07944

J. Cornejo-donoso and T. Antezana, Preliminary trophic model of the Antarctic Peninsula Ecosystem (Sub-area CCAMLR 48.1), Ecological Modelling, vol.218, issue.1-2, pp.1-17, 2008.
DOI : 10.1016/j.ecolmodel.2008.06.011

M. Criales-hernández, C. García, and M. Wolff, Flujos de biomasa y estructura de un ecosistema de surgencia tropical en La Guajira, Caribe colombiano, Revista de Biolog??a Tropical, vol.54, issue.4, pp.1257-1282, 2006.
DOI : 10.15517/rbt.v54i4.14399

G. Daskalov, Overfishing drives a trophic cascade in the Black Sea, Marine Ecology Progress Series, vol.225, pp.53-63, 2002.
DOI : 10.3354/meps225053

D. López, B. Bunke, M. , B. Shirai, and J. , Marine aquaculture off Sardinia Island (Italy): Ecosystem effects evaluated through a trophic mass-balance model, Ecological Modelling, vol.212, issue.3-4, pp.292-303, 2008.
DOI : 10.1016/j.ecolmodel.2007.10.028

G. Díaz-uribe, F. Arreguín-sánchez, and M. Cisneros-mata, Multispecies perspective for small-scale fisheries management: A trophic analysis of La Paz Bay in the Gulf of California, Mexico, Ecological Modelling, vol.201, issue.2, pp.205-222, 2007.
DOI : 10.1016/j.ecolmodel.2006.09.015

A. Dommasnes, V. Christensen, B. Ellertsen, C. Kvamme, W. Melle et al., An Ecopath model for the Norwegian Sea and Barents Sea, Fisheries Impacts on North Atlantic Ecosystems: Models and Analyses. Fisheries Centre Research Reports, pp.213-240, 2001.

A. Erfan and T. Pitcher, An ecosystem simulation model of the Antarctic Peninsula, Modeling Antarctic Marine Ecosystems. Fisheries Centre Research Reports, pp.5-20, 2005.

T. Essington, J. Estes, D. Demaster, D. Doak, T. Williams et al., Pelagic Ecosystem Response to a Century of Commercial Fishing and Whaling, Whales, Whaling and Oceans Ecosystems, pp.38-49, 2006.
DOI : 10.1525/california/9780520248847.003.0005

J. Falk-petersen, Ecosystem effects of red king crab invasion -a modelling approach using Ecopath with Ecosim, pp.99-334, 2004.

J. Field, R. Francis, and K. Aydin, Top-down modeling and bottom-up dynamics: Linking a fisheries-based ecosystem model with climate hypotheses in the Northern California Current, Progress in Oceanography, vol.68, issue.2-4, pp.238-270, 2006.
DOI : 10.1016/j.pocean.2006.02.010

E. Fiogbe, Using ecosystem modeling Ecopath with Ecosim and Ecospace (EwE version 6) " for fisheries management of Benin coastal area, Ecosystem-based fisheries management using Ecopath with Ecosim (EwE) software ? Report for 2nd Regional Workshop. Interim Guinea Current Commission / Guinea Current Large Marine Ecosystem Project, pp.31-39, 2011.

K. Freire, Fishing impacts on marine ecosystems off Brazil, with emphasis on the northeastern region, p.254, 2005.

E. Fulton and A. Smith, Lessons learnt from a comparison of three ecosystem models for Port Phillip Bay, Australia, African Journal of Marine Science, vol.26, issue.1, pp.219-243, 2004.
DOI : 10.2989/18142320409504059

D. Gascuel, S. Guénette, I. Diallo, and A. Sidibé, Impact de la pêche sur l'écosystème marin de Guinée -modélisation EwE, Fisheries Centre Research Reports, vol.17, issue.4, pp.60-339, 1985.

O. Godinot and V. Allain, A preliminary Ecopath model of the warm pool pelagic ecosystem, 2003.

F. Guarin, A model of the trophic structure of the soft-bottom community in Lingayen Gulf, Philippines: An application of the ECOPATH II software and modeling approach, p.341, 1991.

A. Gucu, Can Overfishing be Responsible for the Successful Establishment of Mnemiopsis leidyi in the Black Sea?, Estuarine, Coastal and Shelf Science, vol.54, issue.3, pp.439-451, 2002.
DOI : 10.1006/ecss.2000.0657

S. Guénette, V. Christensen, and P. D. , Trophic modelling of the Peruvian upwelling ecosystem: Towards reconciliation of multiple datasets, Progress in Oceanography, vol.79, issue.2-4, pp.326-335, 2008.
DOI : 10.1016/j.pocean.2008.10.005

S. Haputhantri, M. Villanueva, and J. Moreau, Trophic interactions in the coastal ecosystem of Sri Lanka: An ECOPATH preliminary approach, Estuarine, Coastal and Shelf Science, vol.76, issue.2, pp.304-318, 2008.
DOI : 10.1016/j.ecss.2007.07.013

J. Heymans, The Gulf of Maine, Fisheries Impacts on North Atlantic Ecosystems: Models and Analyses. Fisheries Centre Research Reports, pp.129-149, 1977.

S. Heymans, Ecosystem model of the eastern Aleutians and central Gulf of Alaska in 1963 Food web models and data for studying fisheries and environmental impacts on Eastern Pacific ecosystems, Fisheries Centre Research Reports, vol.13, issue.1, pp.83-105, 2005.

J. Heymans, K. Howell, M. Ayers, M. Burrows, J. Gordon et al., Do we have enough information to apply the ecosystem approach to management of deep-sea fisheries? An example from the West of Scotland, ICES Journal of Marine Science, vol.68, issue.2, pp.265-280, 2010.
DOI : 10.1093/icesjms/fsq065

H. Jiang, H. Cheng, H. Xu, F. Arreguín-sánchez, M. Zetina-rejón et al., Trophic controls of jellyfish blooms and links with fisheries in the East China Sea, Ecological Modelling, vol.212, issue.3-4, pp.492-503, 2008.
DOI : 10.1016/j.ecolmodel.2007.10.048

C. Hoover, Ecosystem effects of climate change in the Antarctica Peninsula, Ecopath 25 Years Conference Proceedings: Extended Abstracts. Fisheries Centre Research Reports, pp.96-97, 2009.

C. Hoover, Hudson Bay Ecosystem: Past, Present, and Future A Little Less Arctic: Top Predators in the World's Largest Northern Inland Sea, pp.217-236, 2010.

C. Hoover, T. Pitcher, and V. Christensen, Effects of hunting, fishing and climate change on the Hudson Bay marine ecosystem: I. Re-creating past changes 1970???2009, Ecological Modelling, vol.264, pp.130-142, 1970.
DOI : 10.1016/j.ecolmodel.2013.02.005

V. Kargbo, Report on Ecopath models for Sierra Leone, Ecosystem-based fisheries management using Ecopath with Ecosim (EwE) software ? Report for 2nd Regional Workshop. Interim Guinea Current Commission / Guinea Current Large Marine Ecosystem Project, pp.133-140, 2011.

D. Kay, Liberia report on Ecopath modeling, Ecosystem-based fisheries management using Ecopath with Ecosim (EwE) software ? Report for 2nd Regional Workshop. Interim Guinea Current Commission / Guinea Current Large Marine Ecosystem Project, pp.105-118, 2011.

K. Lees and S. Mackinson, An Ecopath model of the Irish Sea: ecosystems properties and sensitivity analysis, Science Series Technical Report, vol.138, pp.49-355, 2007.

A. Leloup, F. Desroy, N. , L. Mao, P. Pauly et al., Interactions between a natural food web, shellfish farming and exotic species: The case of the Bay of Mont Saint Michel (France), Estuarine, Coastal and Shelf Science, vol.76, issue.1, pp.111-120, 2008.
DOI : 10.1016/j.ecss.2007.06.011

D. Lercari and F. Arreguín-sánchez, An ecosystem modelling approach to deriving viable harvest strategies for multispecies management of the Northern Gulf of California, Aquatic Conservation: Marine and Freshwater Ecosystems, vol.172, issue.2, pp.384-397, 2009.
DOI : 10.1002/aqc.978

Y. Li, Y. Chen, D. Olson, N. Yu, and L. Chen, Evaluating ecosystem structure and functioning of the East China Sea Shelf ecosystem, China, Hydrobiologia, vol.51, issue.4, pp.331-351, 2009.
DOI : 10.1007/s10750-009-9964-9

S. Libralato, M. Coll, M. Tempesta, A. Santojanni, M. Spoto et al., Food-web traits of protected and exploited areas of the Adriatic Sea, Biological Conservation, vol.143, issue.9, pp.2182-2194, 2010.
DOI : 10.1016/j.biocon.2010.06.002

H. Lin, K. Shao, H. Hsieh, W. Lo, and X. Dai, The effects of system-scale removal of oyster-culture racks from Tapong Bay, southwestern Taiwan: model exploration and comparison with field observations, ICES Journal of Marine Science, vol.66, issue.5, pp.797-810, 2008.
DOI : 10.1093/icesjms/fsp078

P. Liu, K. Shao, J. R. Fan, T. Wong, S. Hwang et al., A trophic model of fringing coral reefs in Nanwan Bay, southern Taiwan suggests overfishing, Marine Environmental Research, vol.68, issue.3, pp.106-117, 2009.
DOI : 10.1016/j.marenvres.2009.04.009
URL : https://hal.archives-ouvertes.fr/hal-00563078

S. Mackinson, Strait of Georgia model Mass-balance models of Northeastern Pacific ecosystems, Fisheries Centre Research Reports, vol.4, issue.1, pp.63-81, 1996.

S. Mackinson and G. Daskalov, An ecosystem model of the North Sea to support an ecosystem approach to fisheries management: description and parameterisation, Science Series, pp.190-363, 2008.

E. Mohammed, Generic Marine Ecosystem Model for the Southeastern Caribbean in the Late 1990s: Application to Grenada and the Grenadines From Mexico to Brazil: Central Atlantic Fisheries Catch Trends and Ecosystem Models, Fisheries Centre Research Reports, vol.11, issue.6, pp.191-226, 2003.

E. Mohammed, M. Vasconcellos, S. Mackinson, P. Fanning, S. Heileman et al., Scientific Basis for Ecosystem-Based Management in the Lesser Antilles Including Interactions with Marine Mammals and Other Top Predators: A trophic model of the Lesser Antilles Pelagic Ecosystem, p.365, 2008.

L. Morissette, M. Hammill, and C. Savenkoff, THE TROPHIC ROLE OF MARINE MAMMALS IN THE NORTHERN GULF OF ST. LAWRENCE, Marine Mammal Science, vol.16, issue.41, pp.74-103, 2006.
DOI : 10.1111/j.1748-7692.2006.00007.x

L. Morissette, M. Castonguay, C. Savenkoff, D. Swain, D. Chabot et al., Contrasting changes between the northern and southern Gulf of St. Lawrence ecosystems associated with the collapse of groundfish stocks, Deep Sea Research Part II: Topical Studies in Oceanography, vol.56, issue.21-22, pp.2117-2131, 2009.
DOI : 10.1016/j.dsr2.2008.11.023

L. Morissette and T. Pitcher, Model structure and balancing Ecosystem Simulation Models of Scotland's West Coast and Sea Lochs, Fisheries Centre Research Reports, vol.13, issue.4, pp.5-24, 2005.

C. Nauen, The artisanal fishery in Schlei-Fjord, Eastern Schleswig-Holstein, Federal Republic of Germany, Management of Coastal Lagoon Fisheries, vol.1, issue.61, pp.403-428, 1984.

C. Ogandagas, Systeme de gestion des pecheries du Gabon par Ecopath et Ecosim, Ecosystem-based fisheries management using Ecopath with Ecosim (EwE) software ? Report for 2nd Regional Workshop. Interim Guinea Current Commission / Guinea Current Large Marine Ecosystem Project, pp.77-85, 2011.

T. Okey, A trophodynamic ecosystem model of Albatross Bay, Gulf of Carpentaria: revealing a plausible fishing explanation for prawn catch declines. CSIRO Marine and Atmospheric Research Paper 010, pp.148-371, 2006.

T. Okey, S. Griffiths, S. Pascoe, R. Kenyon, M. Miller et al., The effect of illegal foreign fishing on the ecosystem in the Gulf of Carpentaria: management options and downstream effects on other fisheries. Australian Fisheries Management Authority Project, Report, vol.825, pp.113-372, 2006.

T. Okey and R. Pugliese, A Preliminary Ecopath Model of the Atlantic Continental Shelf Adjacent to the Southeastern United States, Fisheries Impacts on North Atlantic Ecosystems: Models and Analyses. Fisheries Centre Research Reports, pp.167-181, 2001.

H. Orek, An application of mass balance Ecopath model to the trophic structure in the Black Sea after anchovy collapse, pp.117-374, 2000.

S. Osei and S. Ayivi, Report of GCLME workshop on EwE using Ecopath V6 for Ghana, Ecosystem-based fisheries management using Ecopath with Ecosim (EwE) software ? Report for 2nd Regional Workshop. Interim Guinea Current Commission / Guinea Current Large Marine Ecosystem Project, pp.86-92, 2011.

D. Pauly, Shelf model Mass-balance models of Northeastern Pacific ecosystems, Fisheries Centre Research Reports, vol.4, issue.1, pp.37-62, 1996.

D. Pauly, V. Christensen, L. Alexander, and B. Gold, Stratified models of large marine ecosystems: a general approach and an application to the South China Sea Large marine ecosystems: stress, mitigation and sustainability, pp.148-174, 1993.

H. Pavés and H. González, Carbon fluxes within the pelagic food web in the coastal area off Antofagasta (23??S), Chile: The significance of the microbial versus classical food webs, Ecological Modelling, vol.212, issue.3-4, pp.218-232, 2008.
DOI : 10.1016/j.ecolmodel.2007.10.004

M. Pinkerton, C. Lundquist, C. Duffy, and D. Freeman, Trophic modelling of a New Zealand rocky reef ecosystem using simultaneous adjustment of diet, biomass and energetic parameters, Journal of Experimental Marine Biology and Ecology, vol.367, issue.2, pp.189-203, 2008.
DOI : 10.1016/j.jembe.2008.09.022

J. Pinnegar and N. Polunin, Predicting indirect effects of fishing in Mediterranean rocky littoral communities using a dynamic simulation model, Ecological Modelling, vol.172, issue.2-4, pp.249-267, 2004.
DOI : 10.1016/j.ecolmodel.2003.09.010

C. Piroddi, G. Bearzi, and V. Christensen, Effects of local fisheries and ocean productivity on the northeastern Ionian Sea ecosystem, Ecological Modelling, vol.221, issue.11, pp.1526-1544, 2010.
DOI : 10.1016/j.ecolmodel.2010.03.002

C. Piroddi, G. Bearzi, J. Gonzalvo, and V. Christensen, From common to rare: The case of the Mediterranean common dolphin, Biological Conservation, vol.144, issue.10, pp.2490-2498, 2011.
DOI : 10.1016/j.biocon.2011.07.003

J. Polovina, Model of a coral reef ecosystem, Coral Reefs, vol.290, issue.1, pp.1-11, 1984.
DOI : 10.1007/BF00306135

D. Preikshot, The Influence of Geographic Scale, Climate and Trophic Dynamics upon North Pacific Oceanic Ecosystem Models, pp.208-384, 2007.

P. Pruvost and G. Duhamel, An Ecosystem Model of the Kerguelen Islands' EEZ, Modeling Antarctic Marine Ecosystems. Fisheries Centre Research Reports, pp.40-64, 2005.

G. Rocha, C. Rossi-wongtschowski, A. Pires-vanin, and L. Soares, Trophic models of São Sebastião Channel and continental shelf systems, SE Brazil. Pan-American Journal of Aquatic Sciences, vol.2, issue.2, pp.149-162, 2007.

R. Rosas-luis, C. Salinas-zavala, V. Koch, P. Luna, and M. Morales-zárate, Importance of jumbo squid Dosidicus gigas (Orbigny, 1835) in the pelagic ecosystem of the central Gulf of California, Ecological Modelling, vol.218, issue.1-2, pp.149-161, 2008.
DOI : 10.1016/j.ecolmodel.2008.06.036

J. Ruzicka, R. Brodeur, and T. Wainwright, Seasonal food web models for the Oregon inner-shelf ecosystem: investigating the role of large jellyfish, Reports of California Cooperative Oceanic Fisheries Investigations, vol.48, pp.106-128, 2007.

K. Sedzro, Gestion des pecheries togolaises par les modeles EwE, Ecosystem-based fisheries management using Ecopath with Ecosim (EwE) software ? Report for 2nd Regional Workshop. Interim Guinea Current Commission / Guinea Current Large Marine Ecosystem Project, pp.141-151, 2011.

L. Shannon, V. Christensen, and C. Walters, Modelling stock dynamics in the southern Benguela ecosystem for the period 1978???2002, African Journal of Marine Science, vol.26, issue.1, pp.179-196, 1978.
DOI : 10.2989/18142320409504056

L. Shannon, S. Neira, and M. Taylor, Comparing internal and external drivers in the southern Benguela and the southern and northern Humboldt upwelling ecosystems, African Journal of Marine Science, vol.30, issue.1, pp.63-84, 2008.
DOI : 10.2989/AJMS.2008.30.1.7.457

K. Stobberup, V. Ramos, and M. Coelho, Ecopath Model of the Cape Verde Coastal Ecosystem, West African marine ecosystems: models and fisheries impacts. Fisheries Centre Research Reports, pp.39-56, 2004.

J. Tam, M. Taylor, V. Blaskovic, P. Espinoza, M. Ballón et al., Trophic modeling of the Northern Humboldt Current Ecosystem, Part I: Comparing trophic linkages under La Ni??a and El Ni??o conditions, Trophic and environmental drivers of the Sechura Bay Ecosystem (Peru) over an ENSO cycle Helgoland Marine Research, pp.352-3656215, 2008.
DOI : 10.1016/j.pocean.2008.10.007

M. Taylor, M. Wolff, J. Mendo, and C. Yamashiro, Changes in trophic flow structure of Independence Bay (Peru) over an ENSO cycle, Progress in Oceanography, vol.79, issue.2-4, pp.336-351, 2008.
DOI : 10.1016/j.pocean.2008.10.006

S. Tecchio, M. Coll, V. Christensen, E. Ramírez-llodra, and F. Sardà, Food web structure and vulnerability of a deep-sea ecosystem in the NW Mediterranean Sea. Deep Sea Research Part I: Oceanographic Research Papers, pp.1-15, 2013.

M. Tomczak, B. Müller-karulis, L. Järv, J. Kotta, G. Martin et al., Analysis of trophic networks and carbon flows in south-eastern Baltic coastal ecosystems, Progress in Oceanography, vol.81, issue.1-4, pp.111-131, 2009.
DOI : 10.1016/j.pocean.2009.04.017

K. Tsagarakis, M. Coll, M. Giannoulaki, S. Somarakis, C. Papaconstantinou et al., Food-web traits of the North Aegean Sea ecosystem (Eastern Mediterranean) and comparison with other Mediterranean ecosystems, Estuarine, Coastal and Shelf Science, vol.88, issue.2, pp.233-248, 2010.
DOI : 10.1016/j.ecss.2010.04.007

I. Tsehaye and L. Nagelkerke, Exploring optimal fishing scenarios for the multispecies artisanal fisheries of Eritrea using a trophic model, Ecological Modelling, vol.212, issue.3-4, pp.319-333, 2008.
DOI : 10.1016/j.ecolmodel.2007.10.044

A. Valls, D. Gascuel, S. Guénette, and P. Francour, Modeling trophic interactions to assess the effects of a marine protected area: case study in the NW Mediterranean Sea, Marine Ecology Progress Series, vol.456, pp.201-214, 2012.
DOI : 10.3354/meps09701
URL : https://hal.archives-ouvertes.fr/hal-00840404

G. Velasco, Modelo ecotrófico da plataforma continental do sul do Brasil e cenários de exploração pesqueira da anchoíta (Engraulis anchoita) e do peixe-lanterna (Maurolicus stehmanii), pp.158-401, 2004.

G. Velasco and J. Castello, An ecotrophic model of southern Brazil continental shelf and fisheries scenarios for Engraulis anchoita (Pisces, Engraulididae), Atlântica, vol.27, issue.1, pp.59-68, 2005.

G. Velasco, J. Araújo, J. Castello, and M. Oddone, Exploring MSY strategies for elasmobranch fishes in an ecosystem perspective, Pan-American Journal of Aquatic Sciences, vol.2, pp.163-178, 2007.

C. Wabnitz, G. Balazs, S. Beavers, K. Bjorndal, A. Bolten et al., Ecosystem structure and processes at Kaloko Honokohau, focusing on the role of herbivores, including the green sea turtle Chelonia mydas, in reef resilience, Marine Ecology Progress Series, vol.420, pp.27-44, 2010.
DOI : 10.3354/meps08846

C. Walters, S. Martell, and B. Mahmoudi, An Ecosim model for exploring ecosystem management options for the Gulf of Mexico: implications of including multistanza life history models for policy predictions, Presentation at Mote Symposium #6. 23p, p.405

C. Walters, V. Christensen, W. Walters, and K. Rose, Representation of multistanza life histories in Ecospace models for spatial organization of ecosystem trophic interaction patterns, Bulletin of Marine Science, vol.86, issue.2, pp.439-459, 2010.

K. Watermeyer, L. Shannon, J. Roux, and C. Griffiths, Changes in the trophic structure of the northern Benguela before and after the onset of industrial fishing, African Journal of Marine Science, vol.30, issue.2, pp.383-403, 2008.
DOI : 10.2989/AJMS.2008.30.2.12.562

K. Watermeyer, L. Shannon, and C. Griffiths, Changes in the trophic structure of the southern Benguela before and after the onset of industrial fishing, African Journal of Marine Science, vol.30, issue.2, pp.351-382, 2008.
DOI : 10.2989/AJMS.2008.30.2.11.561

A. Williams and A. Abioye, Reports on Ecopath Modeling for Nigeria, Ecosystem-based fisheries management using Ecopath with Ecosim (EwE) software ? Report for 2nd Regional Workshop. Interim Guinea Current Commission / Guinea Current Large Marine Ecosystem Project, pp.118-125, 2011.

Y. Zhang and Y. Chen, Modeling and evaluating ecosystem in 1980s and 1990s for American lobster (Homarus americanus) in the Gulf of Maine, Ecological Modelling, vol.203, issue.3-4, pp.475-489, 2007.
DOI : 10.1016/j.ecolmodel.2006.12.019

R. Angelini and F. Vaz-velho, Ecosystem structure and trophic analysis of Angolan fishery landings, Scientia Marina, vol.75, issue.2, pp.309-319, 2011.
DOI : 10.3989/scimar.2011.75n2309

P. Antony, S. Dhanya, P. Lyla, B. Kurup, and A. Khan, Ecological role of stomatopods (mantis shrimps) and potential impacts of trawling in a marine ecosystem of the southeast coast of India, Ecological Modelling, vol.221, issue.21, pp.2604-2614, 2010.
DOI : 10.1016/j.ecolmodel.2010.07.017

J. Araújo and A. Bundy, Description of three Ecopath with Ecosim ecosystem models developed for the Bay of Fundy, Western Scotian Shelf and NAFO Division 4X, Canadian Technical Report of Fisheries and Aquatic Sciences, p.189, 2011.

J. Araújo and A. Bundy, Effects of environmental change, fisheries and trophodynamics on the ecosystem of the western Scotian Shelf, Canada, Marine Ecology Progress Series, vol.464, pp.51-67, 2012.
DOI : 10.3354/meps09792

J. Araújo, S. Mackinson, R. Stanford, D. Sims, A. Southward et al., Modelling food web interactions, variation in plankton production, and fisheries in the western English Channel ecosystem, Marine Ecology Progress Series, vol.309, pp.175-187, 2006.
DOI : 10.3354/meps309175

E. Arias-gonzález, E. Nuñez-lara, C. González-salas, and R. Galzin, Trophic models for investigation of fishing effect on coral reef ecosystems, Ecological Modelling, vol.172, issue.2-4, pp.197-212, 2004.
DOI : 10.1016/j.ecolmodel.2003.09.007

E. Arias-gonzález, C. González-gándara, L. Cabrera, and V. Christensen, Predicted impact of the invasive lionfish Pterois volitans on the food web of a Caribbean coral reef, Environmental Research, vol.111, issue.7, pp.917-925, 2011.
DOI : 10.1016/j.envres.2011.07.008

K. Aydin, S. Gaichas, I. Ortiz, D. Kinzey, and N. Friday, A Comparison of the Bering Sea, Gulf of Alaska, and Aleutian Islands Large Marine Ecosystems Through Food Web Modeling. NOAA Technical Memorandum NMFS-AFSC-178, pp.298-432, 2007.

D. B?naru, C. Mellon-duval, D. Roos, J. Bigot, A. Souplet et al., Trophic structure in the Gulf of Lions marine ecosystem (north-western Mediterranean Sea) and fishing impacts, Journal of Marine Systems, vol.111, issue.112, pp.45-68, 2012.
DOI : 10.1016/j.jmarsys.2012.09.010

A. Barausse, A. Duci, C. Mazzoldi, Y. Artioli, and L. Palmeri, Trophic network model of the Northern Adriatic Sea: Analysis of an exploited and eutrophic ecosystem, Estuarine, Coastal and Shelf Science, vol.83, issue.4, pp.577-590, 2009.
DOI : 10.1016/j.ecss.2009.05.003

J. Bayle-sempere, F. Arreguín-sánchez, P. Sanchez-jerez, L. Salcido-guevara, D. Fernandez-jover et al., Trophic structure and energy fluxes around a Mediterranean fish farm, Ecological Modelling, vol.248, pp.135-147, 2013.
DOI : 10.1016/j.ecolmodel.2012.08.028

S. Booth and D. Zeller, Mercury, Food Webs, and Marine Mammals: Implications of Diet and Climate Change for Human Health, Environmental Health Perspectives, vol.113, issue.5, pp.521-526, 2005.
DOI : 10.1289/ehp.7603

E. Buchary, Evaluating the Effect of the 1980 Trawl Ban in the Java Sea, Indonesia: An Ecosystem-based Approach, pp.134-437, 1999.

A. Bundy, J. Araújo, and S. Guénette, Multi-species interactions: Effects of multi-species harvesting on single species harvest rates in NAFO Division 4X. DFO Canadian Science Advisory Secretariat Research Document, pp.60-86, 2012.

N. Chaikina, A Trophic Mass Balance Model of the Sea of Okhotsk for the 1980s period, p.46, 2004.

Z. Chen, Y. Qiu, X. Jia, and S. Xu, Simulating fisheries management options for the Beibu Gulf by means of an ecological modelling optimization routine, Fisheries Research, vol.89, issue.3, pp.257-265, 2008.
DOI : 10.1016/j.fishres.2007.09.004

J. Cheng, W. Cheung, and T. Pitcher, Mass-balance ecosystem model of the East China Sea, Progress in Natural Science, vol.19, issue.10, pp.1271-1280, 2009.
DOI : 10.1016/j.pnsc.2009.03.003

A. Cisneros-montemayor, V. Christensen, F. Arreguín-sánchez, and R. Sumaila, Ecosystem models for management advice: An analysis of recreational and commercial fisheries policies in Baja California Sur, Mexico, Ecological Modelling, vol.228, pp.8-16, 2012.
DOI : 10.1016/j.ecolmodel.2011.12.021

M. Coll, J. Navarro, and I. Palomera, Ecological role, fishing impact, and management options for the recovery of a Mediterranean endemic skate by means of food web models, Biological Conservation, vol.157, pp.108-120, 2013.
DOI : 10.1016/j.biocon.2012.06.029

M. Criales-hernandez, L. Duarte, C. García, and L. Manjarrés, Ecosystem impacts of the introduction of bycatch reduction devices in a tropical shrimp trawl fishery: Insights through simulation, Fisheries Research, vol.77, issue.3, pp.333-342, 2006.
DOI : 10.1016/j.fishres.2005.10.005

D. Mutsert and K. , The effects of a freshwater diversion on nekton species biomass distributions, food web pathways, and community structure in a Louisiana estuary, pp.188-445, 2010.

D. Mutsert, K. Cowan, J. Jr, and C. Walters, Using Ecopath with Ecosim to Explore Nekton Community Response to Freshwater Diversion into a Louisiana Estuary, Marine and Coastal Fisheries, vol.83, issue.2, pp.104-116, 2012.
DOI : 10.1007/s100210000011

G. Díaz-uribe, F. Arreguín-sánchez, D. Lercari-bernier, V. Cruz-escalona, M. Zetina-rejón et al., An integrated ecosystem trophic model for the North and Central Gulf of California: An alternative view for endemic species conservation, Ecological Modelling, vol.230, pp.73-91, 2012.
DOI : 10.1016/j.ecolmodel.2012.01.009

A. Downing, E. Van-nes, J. Janse, F. Witte, I. Cornelissen et al., Collapse and reorganization of a food web of Mwanza Gulf, Lake Victoria, Ecological Applications, vol.22, issue.1, pp.229-239, 2012.
DOI : 10.1111/j.1095-8312.2008.00971.x

L. Duan, S. Li, Y. Liu, T. Jiang, and P. Failler, A trophic model of the Pearl River Delta coastal ecosystem, Ocean & Coastal Management, vol.52, issue.7, pp.359-367, 2009.
DOI : 10.1016/j.ocecoaman.2009.04.005

L. Duan, S. Li, Y. Liu, J. Moreau, and V. Christensen, Modeling changes in the coastal ecosystem of the Pearl River Estuary from 1981 to 1998, Ecological Modelling, vol.220, issue.20, pp.2802-2818, 2009.
DOI : 10.1016/j.ecolmodel.2009.07.016

M. Espinosa-romero, E. Gregr, C. Walters, V. Christensen, and K. Chan, Representing mediating effects and species reintroductions in Ecopath with Ecosim, Ecological Modelling, vol.222, issue.9, pp.1569-1579, 2011.
DOI : 10.1016/j.ecolmodel.2011.02.008

F. Khan, M. Panikkar, and P. , Assessment of impacts of invasive fishes on the food web structure and ecosystem properties of a tropical reservoir in India, Ecological Modelling, vol.220, issue.18, pp.2281-2290, 2009.
DOI : 10.1016/j.ecolmodel.2009.05.020

T. Fetahi and S. Mengistou, Trophic analysis of Lake Awassa (Ethiopia) using mass-balance Ecopath model, Ecological Modelling, vol.201, issue.3-4, pp.398-408, 2007.
DOI : 10.1016/j.ecolmodel.2006.10.010

N. Fouzai, M. Coll, I. Palomera, A. Santojanni, E. Arneri et al., Fishing management scenarios to rebuild exploited resources and ecosystems of the Northern-Central Adriatic (Mediterranean Sea), Journal of Marine Systems, vol.102, issue.104, pp.39-51, 2012.
DOI : 10.1016/j.jmarsys.2012.05.003

M. Frisk, T. Miller, R. Latour, and S. Martell, Assessing biomass gains from marsh restoration in Delaware Bay using Ecopath with Ecosim, Ecological Modelling, vol.222, issue.1, pp.190-200, 2011.
DOI : 10.1016/j.ecolmodel.2010.08.026

S. Gaichas, K. Aydin, and R. Francis, Using food web model results to inform stock assessment estimates of mortality and production for ecosystem-based fisheries management, Canadian Journal of Fisheries and Aquatic Sciences, vol.67, issue.9, pp.1490-1506, 2010.

S. Gaichas, K. Aydin, R. Francis, and J. Post, What drives dynamics in the Gulf of Alaska? Integrating hypotheses of species, fishing, and climate relationships using ecosystem modeling, Canadian Journal of Fisheries and Aquatic Sciences, vol.68, issue.9, pp.1553-1578, 2011.
DOI : 10.1139/f2011-080

S. Goldsworthy, B. Page, P. Rogers, C. Bulman, A. Wiebkin et al., Trophodynamics of the eastern Great Australian Bight ecosystem: Ecological change associated with the growth of Australia's largest fishery, Ecological Modelling, vol.255, pp.38-57, 2013.
DOI : 10.1016/j.ecolmodel.2013.01.006

S. Griffiths, J. Young, M. Lansdell, R. Campbell, J. Hampton et al., Ecological effects of longline fishing and climate change on the pelagic ecosystem off eastern Australia, Reviews in Fish Biology and Fisheries, vol.104, issue.2, pp.239-272, 2010.
DOI : 10.1007/s11160-009-9157-7

S. Griffiths, R. Olson, and G. Watters, Complex wasp-waist regulation of pelagic ecosystems in the Pacific Ocean, Reviews in Fish Biology and Fisheries, vol.104, issue.5728, pp.1-17, 2012.
DOI : 10.1007/s11160-012-9301-7

J. Han, H. Kumar, H. Lee, C. Zhang, S. Kim et al., Integrative trophic network assessments of a lentic ecosystem by key ecological approaches of water chemistry, trophic guilds, and ecosystem health assessments along with an ECOPATH model, Ecological Modelling, vol.222, issue.19, pp.3457-3472, 2011.
DOI : 10.1016/j.ecolmodel.2011.08.001

C. Harvey, G. Williams, and P. Levin, Food Web Structure and Trophic Control in Central Puget Sound, Estuaries and Coasts, vol.34, issue.3, pp.821-838, 2012.
DOI : 10.1007/s12237-012-9483-1

C. Hoover, T. Pitcher, and V. Christensen, An Ecosystem Model of Hudson Bay, Canada with changes from 1970-2009, From the Tropics to the Poles: Ecosystem Models of Hudson Bay, Kaloko-Honok?hau, Hawai?i, and the Antarctic Peninsula. Fisheries Centre Research Reports, pp.2-68, 2012.

C. Hoover, T. Pitcher, and E. Pakhomov, The Antarctic Peninsula Marine Ecosystem Model and Simulations: 1978-Present, From the Tropics to the Poles: Ecosystem Models of Hudson Bay, Kaloko-Honok?hau, Hawai?i, and the Antarctic Peninsula. Fisheries Centre Research Reports, pp.108-182, 2012.

M. Hossain, . Md, T. Matsuishi, and G. Arhonditsis, Elucidation of ecosystem attributes of an oligotrophic lake in Hokkaido, Japan, using Ecopath with Ecosim (EwE), Ecological Modelling, vol.221, issue.13-14, pp.1717-1730, 2010.
DOI : 10.1016/j.ecolmodel.2010.03.025

K. Howell, J. Heymans, J. Gordon, J. Duncan, M. Ayers et al., DEEPFISH Project: Applying an ecosystem approach to the sustainable management of deep-water fisheries. Part 1: Development of an Ecopath with Ecosim model, pp.112-466, 2009.

P. Jia, M. Hu, Z. Hu, Q. Liu, and Z. Wu, Modeling trophic structure and energy flows in a typical macrophyte dominated shallow lake using the mass balanced model, Ecological Modelling, vol.233, pp.26-30, 2012.
DOI : 10.1016/j.ecolmodel.2012.02.026

H. Jiang, H. Cheng, L. Quesne, W. Xu, H. Wu et al., Ecosystem model predictions of fishery and conservation trade-offs resulting from marine protected areas in the East China Sea, Environmental Conservation, vol.212, issue.02, pp.137-146, 2008.
DOI : 10.1126/science.284.5419.1537

N. Klaer, Changes in the structure of demersal fish communities of the south east Australian continental shelf from 1915 to 1961, pp.174-470, 2006.

B. Langseth, R. M. Zhang, and H. , Modeling species invasions in Ecopath with Ecosim: An evaluation using Laurentian Great Lakes models, Ecological Modelling, vol.247, pp.251-261, 2012.
DOI : 10.1016/j.ecolmodel.2012.08.015

S. Lee, K. Aydin, P. Spencer, T. Wilderbuer, and C. Zhang, The role of flatfishes in the organization and structure of the eastern Bering Sea ecosystem, Fisheries Science, vol.104, issue.3, pp.411-434, 2010.
DOI : 10.1007/s12562-009-0201-2

D. Lercari, L. Bergamino, and O. Defeo, Trophic models in sandy beaches with contrasting morphodynamics: Comparing ecosystem structure and biomass flow, Ecological Modelling, vol.221, issue.23, pp.2751-2759, 2010.
DOI : 10.1016/j.ecolmodel.2010.08.027

L. Li, C. Ainsworth, and T. Pitcher, Presence of harbour seals (Phoca vitulina) may increase exploitable fish biomass in the Strait of Georgia, Progress in Oceanography, vol.87, issue.1-4, pp.235-241, 2010.
DOI : 10.1016/j.pocean.2010.09.006

Q. Liu, Y. Chen, J. Li, and L. Chen, The food web structure and ecosystem properties of a filter-feeding carps dominated deep reservoir ecosystem, Ecological Modelling, vol.203, issue.3-4, pp.279-289, 2007.
DOI : 10.1016/j.ecolmodel.2006.11.028

J. Lobry, V. David, S. Pasquaud, M. Lepage, B. Sautour et al., Diversity and stability of an estuarine trophic network, Marine Ecology Progress Series, vol.358, pp.13-25, 2008.
DOI : 10.3354/meps07294

H. Ma, H. Townsend, X. Zhang, M. Sigrist, and V. Christensen, Using a fisheries ecosystem model with a water quality model to explore trophic and habitat impacts on a fisheries stock: A case study of the blue crab population in the Chesapeake Bay, Ecological Modelling, vol.221, issue.7, pp.997-1004, 2010.
DOI : 10.1016/j.ecolmodel.2009.01.026

A. Milessi, D. Calliari, L. Rodríguez-graña, D. Conde, J. Sellanes et al., Trophic mass-balance model of a subtropical coastal lagoon, including a comparison with a stable isotope analysis of the food-web, Ecological Modelling, vol.221, issue.24, pp.2859-2869, 2010.
DOI : 10.1016/j.ecolmodel.2010.08.037

K. Mohamed, P. Zacharia, C. Muthiah, K. Abdurahiman, and T. Nayak, A trophic model of the Arabian Sea ecosystem off Karnataka and simulation of fishery yields for its multigear marine fisheries, pp.65-482, 2005.

K. Mohamed and P. Zacharia, Prediction and modelling of marine fishery yields from the Arabian Sea off Karnataka using Ecosim, Indian Journal of Marine Fisheries, vol.38, issue.1, pp.69-76, 2009.

E. Mohammed, A preliminary model of the Lancaster Sound Region in the 1980s, Fisheries Impacts on North Atlantic Ecosystems: Models and Analyses. Fisheries Centre Research Reports, pp.99-110, 2001.

M. Morales-zárate, S. Lluch-cota, E. Serviere-zaragoza, G. Del-próo, and S. , Modeling an exploited rocky coastal ecosystem: Bahia Tortugas, Mexico, Ecological Modelling, vol.222, issue.5, pp.1185-1191, 2011.
DOI : 10.1016/j.ecolmodel.2010.12.011

D. Moutopoulos, S. Libralato, C. Solidoro, and K. Stergiou, Toward an ecosystem approach to fisheries in the Mediterranean Sea: Multi-gear/multi-species implications from an ecosystem model of the Greek Ionian Sea, Journal of Marine Systems, vol.113, issue.114, pp.13-28, 2013.
DOI : 10.1016/j.jmarsys.2012.12.002

M. Nascimento, G. Velasco, T. Okey, V. Christensen, and C. Amaral, Trophic model of the outer continental shelf and upper slope demersal community of the southeastern Brazilian Bight, Scientia Marina, vol.0, issue.0, pp.763-779, 2012.
DOI : 10.3989/scimar.03359.26A

S. Neira, C. Moloney, P. Cury, C. Mullon, and V. Christensen, Mechanisms affecting recovery in an upwelling food web: The case of the southern Humboldt, Progress in Oceanography, vol.83, issue.1-4, pp.404-416, 2009.
DOI : 10.1016/j.pocean.2009.07.007

S. Niiranen, T. Stipa, A. Hirvonen, J. Paakkonen, and A. Norkko, Modelled bioaccumulation of chemical warfare agents within the Baltic Sea food web, 2008 IEEE/OES US/EU-Baltic International Symposium, p.490, 2008.
DOI : 10.1109/BALTIC.2008.4625532

M. Nuttall, A. Jordaan, R. Cerrato, and M. Frisk, Identifying 120 years of decline in ecosystem structure and maturity of Great South Bay, New York using the Ecopath modelling approach, Ecological Modelling, vol.222, issue.18, pp.3335-3345, 2011.
DOI : 10.1016/j.ecolmodel.2011.07.004

M. Ortiz, The effect of a crab predator (Cancer porteri) on secondary producers versus ecological model predictions in Tongoy Bay (south-east Pacific coast): implications for management and fisheries. Aquatic Conservation: Marine and Freshwater Ecosystems, pp.923-929, 2008.

M. Ortiz, Mass balanced and dynamic simulations of trophic models of kelp ecosystems near the Mejillones Peninsula of northern Chile (SE Pacific): Comparative network structure and assessment of harvest strategies, Ecological Modelling, vol.216, issue.1, pp.31-46, 2008.
DOI : 10.1016/j.ecolmodel.2008.04.006

M. Ortiz, M. Avendaño, L. Campos, and F. Berrios, Spatial and mass balanced trophic models of La Rinconada Marine Reserve (SE Pacific coast), a protected benthic ecosystem: Management strategy assessment, Ecological Modelling, vol.220, issue.23, pp.3413-3423, 2009.
DOI : 10.1016/j.ecolmodel.2009.08.020

M. Ortiz, M. Avendaño, M. Cantillañez, F. Berrios, and L. Campos, Trophic mass balanced models and dynamic simulations of benthic communities from La Rinconada Marine Reserve off northern Chile: network properties and multispecies harvest scenario assessments Aquatic Conservation: Marine and Freshwater Ecosystems, pp.58-73, 2010.

M. Ortiz and M. Wolff, Trophic models of four benthic communities in Tongoy Bay (Chile): comparative analysis and preliminary assessment of management strategies, Journal of Experimental Marine Biology and Ecology, vol.268, issue.2, pp.205-235, 2002.
DOI : 10.1016/S0022-0981(01)00385-9

M. Ortiz and M. Wolff, Dynamical simulation of mass-balance trophic models for benthic communities of north-central Chile: assessment of resilience time under alternative management scenarios, Ecological Modelling, vol.148, issue.3, pp.277-291, 2002.
DOI : 10.1016/S0304-3800(01)00454-9

P. Panikkar, F. Khan, and M. , Comparative mass-balanced trophic models to assess the impact of environmental management measures in a tropical reservoir ecosystem, Ecological Modelling, vol.212, issue.3-4, pp.280-291, 2008.
DOI : 10.1016/j.ecolmodel.2007.10.029

J. Patrício and J. Marques, Mass balanced models of the food web in three areas along a gradient of eutrophication symptoms in the south arm of the Mondego estuary (Portugal), Ecological Modelling, vol.197, issue.1-2, pp.21-34, 2006.
DOI : 10.1016/j.ecolmodel.2006.03.008

D. Pauly, F. Arreguín-sánchez, J. Browder, V. Christensen, S. Manickchand-heilemann et al., Toward a stratified mass-balance model of trophic fluxes in the Gulf of Mexico large marine ecosystem, The Gulf of Mexico Large Marine Ecosystem ? Assessment, Sustainability, and Management. Blackwell Science, pp.278-293, 1999.

T. Pedersen, M. Nilsen, E. Nilssen, E. Berg, and M. Reigstad, Trophic model of a lightly exploited cod-dominated ecosystem, Ecological Modelling, vol.214, issue.2-4, pp.95-111, 2008.
DOI : 10.1016/j.ecolmodel.2007.12.012

G. Persad and M. Webber, The Use of Ecopath Software to Model Trophic Interactions within the Zooplankton Community of Discovery Bay, Jamaica, The Open Marine Biology Journal, vol.3, issue.1, pp.95-104, 2009.
DOI : 10.2174/1874450800903010095

L. Phong, V. Dam, A. Udo, H. , V. Mensvoort et al., An agro-ecological evaluation of aquaculture integration into farming systems of the Mekong Delta, Agriculture, Ecosystems & Environment, vol.138, issue.3-4, pp.232-241, 2010.
DOI : 10.1016/j.agee.2010.05.004

D. Ruiz and M. Wolff, The Bolivar Channel Ecosystem of the Galapagos Marine Reserve: Energy flow structure and role of keystone groups, Journal of Sea Research, vol.66, issue.2, pp.123-134, 2011.
DOI : 10.1016/j.seares.2011.05.006

J. Ruzicka, R. Brodeur, R. Emmett, J. Steele, J. Zamon et al., Interannual variability in the Northern California Current food web structure: Changes in energy flow pathways and the role of forage fish, euphausiids, and jellyfish, Progress in Oceanography, vol.102, pp.19-41, 2012.
DOI : 10.1016/j.pocean.2012.02.002

A. Salomon, N. Waller, C. Mcilhagga, R. Yung, and C. Walters, Modeling the trophic effects of marine protected area zoning policies: a case study, Aquatic Ecology, vol.36, issue.1, pp.85-95, 2002.
DOI : 10.1023/A:1013346622536

M. Tomczak, S. Niiranen, O. Hjerne, and T. Blenckner, Ecosystem flow dynamics in the Baltic Proper???Using a multi-trophic dataset as a basis for food???web modelling, Ecological Modelling, vol.230, pp.123-147, 2012.
DOI : 10.1016/j.ecolmodel.2011.12.014

A. Traore, A. Ouattara, L. Doumbia, L. Tah, J. Moreau et al., Trophic structure and interactions in Lake Ayamé (Côte d'Ivoire) Knowledge and Management of, Aquatic Ecosystems, vol.388, issue.02, pp.1-21, 2008.

H. Ullah, . Md, . Rashed-un-nabi-md, A. Al-mamun, and . Md, Trophic model of the coastal ecosystem of the Bay of Bengal using mass balance Ecopath model, Ecological Modelling, vol.225, pp.82-94, 2012.
DOI : 10.1016/j.ecolmodel.2011.11.013

D. Varkey, C. Ainsworth, and T. Pitcher, Modelling Reef Fish Population Responses to Fisheries Restrictions in Marine Protected Areas in the Coral Triangle, Journal of Marine Biology, vol.47, issue.4, p.18, 2012.
DOI : 10.1093/icesjms/fsn201

L. Vidal and P. D. , Integration of subsystems models as a tool toward describing feeding interactions and fisheries impacts in a large marine ecosystem, the Gulf of Mexico, Ocean & Coastal Management, vol.47, issue.11-12, pp.709-725, 2004.
DOI : 10.1016/j.ocecoaman.2004.12.009

M. Villanueva, Biodiversité et relations trophiques dans quelques milieux estuariens et lagunaires de l'Afrique de l'Ouest : adaptations aux pressions environnementales, pp.246-512, 2004.

M. Villanueva, P. Diouf, J. Albaret, and J. Moreau, Complexity in trophic structure and stability in a modelled West African estuary. Coastal Ecosystems of West-Africa Biological Diversity-Resources-Conservation, pp.15-26, 2005.

M. Villanueva, M. Ouedraogo, and J. Moreau, Trophic relationships in the recently impounded Bagr?? reservoir in Burkina Faso, Ecological Modelling, vol.191, issue.2, pp.243-259, 2006.
DOI : 10.1016/j.ecolmodel.2005.04.031

M. Villanueva, P. Lalèyè, J. Albaret, R. Lae, T. De-morais et al., Comparative analysis of trophic structure and interactions of two tropical lagoons, Ecological Modelling, vol.197, issue.3-4, pp.461-477, 2006.
DOI : 10.1016/j.ecolmodel.2006.03.016
URL : https://hal.archives-ouvertes.fr/hal-01483093

M. Villanueva, J. Moreau, U. Amarasinghe, F. F. Schiemer, D. Simon et al., A comparison of the foodweb and the trophic structure between two Asian reservoirs by using ECOPATH with ECOSIM and ECOSPACE Aquatic Ecosystem and Development: Comparative Asian Perspectives, pp.413-434, 2008.

C. Wabnitz, Baseline Trophic Relationships in Kaloko-Honok?hau, Hawai?i, From the Tropics to the Poles: Ecosystem Models of Hudson Bay, Kaloko-Honok?hau, Hawai?i, and the Antarctic Peninsula. Fisheries Centre Research Reports, pp.69-107, 2012.

Y. Wang, S. Li, L. Duan, and Y. Liu, Fishery policy exploration in the Pearl River Estuary based on an Ecosim model, Ecological Modelling, vol.230, pp.34-43, 2012.
DOI : 10.1016/j.ecolmodel.2012.01.017

M. Wolff, D. Ruiz, and M. Taylor, El Ni??o induced changes to the Bolivar Channel ecosystem (Galapagos): comparing model simulations with historical biomass time series, Marine Ecology Progress Series, vol.448, pp.7-22, 2012.
DOI : 10.3354/meps09542

S. Xu, Z. Chen, S. Li, and P. He, Modeling Trophic Structure and Energy Flows in a Coastal Artificial Ecosystem Using Mass-Balance Ecopath Model, Estuaries and Coasts, vol.34, issue.4, pp.351-363, 2011.
DOI : 10.1007/s12237-010-9323-0

E. Fulton and T. Smith, Ecosim Case Study: Port Phillip Bay, Australia The Use of Ecosystem Models to Investigate Multispecies Management Strategies for Capture Fisheries, Fisheries Centre Research Reports, vol.10, issue.2, pp.83-93, 2002.

M. Criales-hernández, Flujos de energia en el sistema de surgencia tropical en la peninsula de la Guajira, Caribe Colombiano, 2004.

L. Shannon, C. Moloney, A. Jarre, and J. Field, Trophic flows in the southern Benguela during the 1980s and 1990s, Journal of Marine Systems, vol.39, issue.1-2, pp.83-116, 2003.
DOI : 10.1016/S0924-7963(02)00250-6

D. Gascuel, S. Guénette, I. Diallo, and A. Sidibé, Impact de la pêche sur l'écosystème marin de Guinée -Modélisation EwE, Fisheries Centre Research Reports, vol.17, issue.4, p.60, 1985.