Pathogen population genetics, evolutionary potential, and durable resistance, Annu Rev Phytopathol, vol.40, pp.349-379, 2002. ,
, Evolution in Health and Disease, p.11, 2007.
Models of fungicide resistance dynamics, Annu Rev Phytopathol, vol.46, pp.123-147, 2008. ,
The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts, Nature Rev Genet, vol.11, pp.405-414, 2010. ,
The population dynamics of antimicrobial chemotherapy, Antimicrob Agents Ch, vol.41, pp.363-73, 1997. ,
Adaptive Dynamics of Infectious Diseases: In Pursuit of Virulence Management. Cambridge Studies in Adaptive Dynamics, 2005. ,
Vaccines against malaria, Philos Trans R Soc Lond B, vol.366, pp.2806-2814, 2011. ,
Tuberculosis: Commentary on a reemergent killer, Science, vol.257, pp.1055-1064, 1992. ,
Vaccination and antigenic drift in inuenza, Vaccine, vol.26, pp.8-14, 2008. ,
Probability of mutation to multiple virulence and durability of resistance gene pyramids, Phytopathology, vol.80, pp.221-223, 1990. ,
Population biological principles of drug-resistance evolution in infectious diseases, Lancet Infect Dis, vol.11, pp.236-247, 2011. ,
Evaluating treatment protocols to prevent antibiotic resistance, Proc Natl Acad Sci, vol.94, pp.12106-12111, 1997. ,
Measures of durability of resistance, Phytopathology, vol.93, pp.616-641, 2003. ,
The evolutionary epidemiology of vaccination, J R Soc Interface, vol.4, pp.803-817, 2007. ,
An epidemiological framework for modelling fungicide dynamics and control, PLoS ONE, vol.7, p.40941, 2012. ,
Evolutionary epidemiology of drugresistance in space, PLoS Comput Biol, vol.5, p.1000337, 2009. ,
Durable strategies to deploy plant resistance in agricultural landscapes, New Phytol, vol.193, pp.1064-1075, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01000305
The evolutionary epidemiology of multilocus drug resistance, Evolution, vol.66, pp.1582-97, 2012. ,
Ecological theory suggests that antimicrobial cycling will not reduce antimicrobial resistance in hospitals, Proc Natl Acad Sci, vol.101, pp.13285-13290, 2004. ,
Modeling and simulating the evolution of resistance against antibiotics, Int J BioMed Comput, vol.33, pp.65-81, 1993. ,
Sources and sinks: A stochastic model of evolution in heterogeneous environments, Phys Rev Lett, vol.105, p.248104, 2010. ,
Evolution with stochastic fitness and stochastic migration, PLoS ONE, vol.4, p.7130, 2009. ,
Integrating life history and cross-immunity into the evolutionary dynamics of pathogens, Proc R Soc Lond B, vol.273, pp.409-416, 2006. ,
Modeling antibiotic resistance in hospitals: The impact of minimizing treatment duration, J Theor Biol, vol.249, pp.487-499, 2007. ,
Competition processes, II of Proc. 4th Berkeley Sympos. Math. Statist. and Prob, pp.421-430, 1961. ,
Epistasis the essential role of gene interactions in the structure and evolution of genetic systems, Nature Rev Genet, vol.9, pp.855-867, 2008. ,
Positive epistasis drives the acquisition of multidrug resistance, PLoS Genet, vol.5, p.1000578, 2009. ,
An Introduction to Stochastic Processes with Biology Applications, 2003. ,
Modélisation stochastique des processus d'adaptation d'une population de pathogène aux rsistances génétiques des hôtes, 2013. ,
Exact stochastic simulation of coupled chemical reactions, J Phys Chem-US, vol.81, pp.2340-2361, 1977. ,
Markov processes: characterization and convergence. Wiley series in probability and statistics, 2005. ,
Biological applications of the theory of birth-and-death processes, Brief Bioinform, vol.7, pp.70-85, 2006. ,
Exponentiality of first passage times of continuous time markov chains, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00595912
Spatial deployment of gene-for-gene resistance governs evolution and spread of pathogen populations, Theor Ecol, vol.2, pp.229-238, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02660846
The role of compensatory mutations in the emergence of drug resistance, PLoS Comput Biol, vol.2, p.137, 2006. ,
Genetic recombination of human immunodeficiency virus type 1 in one round of viral replication: Effects of genetic distance, target cells, accessory genes, and lack of high negative interference in crossover events, J Virol, vol.79, pp.1666-1677, 2005. ,
Impacts of habitat fragmentation and patch size upon migration rates, Ecol Appl, vol.10, pp.131-144, 2000. ,
Empirical evidence of spatial thresholds to control invasion of fungal parasites and saprotrophs, New Phytol, vol.163, pp.125-132, 2004. ,
Epidemiology and disease-control under gene-forgene plant-pathogen interaction, J Theor Biol, vol.238, pp.780-794, 2006. ,
How does the resistance threshold in spatially explicit epidemic dy namics depend on the basic reproductive ratio and spatial correlation of crop genotypes?, J Theor Biol, vol.276, pp.117-125, 2011. ,
Mathematical models of vaccination, Brit Med Bull, vol.62, pp.187-199, 2002. ,
Combination therapy: a way to limit emergence of resistance?, Am J Med, vol.80, pp.138-142, 1986. ,
Mixtures of anthelmintics: A strategy against resistance, Aust Vet J, vol.65, pp.62-64, 1988. ,
Dna vaccination with vaccinia virus l1r and a33r genes protects mice against a lethal poxvirus challenge, Virology, vol.266, pp.329-339, 2000. ,
Tagging and mapping of genes and qtl and molecular marker-assisted selection for traits of economic importance in bean and cowpea, Field Crop Res, vol.82, pp.135-154, 2003. ,
Classical and molecular genetics of bremia lactuca, cause of lettuce downy mildew, Eur J Plant Pathol, vol.122, pp.19-30, 2008. ,
Reversing insect adaptation to transgenic insecticidal plants, Proc R Soc Lond B, vol.268, pp.1475-1480, 2001. ,
Fitness costs limit escape from cytotoxic t lymphocytes by inuenza a viruses, Vaccine, vol.24, pp.6594-6596, 2006. ,
Key determinants of resistance durability to plant viruses: Insights from a model linking within-and betweenhost dynamics, Virus Res, vol.141, pp.140-149, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02666453
Evolution of a pathogen population in host mixtures: rate of emergence of complex races, Theor Appl Genet, vol.94, pp.991-999, 1997. ,
URL : https://hal.archives-ouvertes.fr/hal-02684403
Pathogen fitness penalty as a predictor of durability of disease resistance genes, Annu Rev Phytopathol, vol.39, pp.187-224, 2001. ,
Following the very initial growth of biological rna viral clones, J Genl Virol, vol.86, pp.435-443, 2005. ,
Different mutations in the genome-linked protein vpg of potato virus y confer virulence on the pvr2 3 resistance in pepper, Mol Plant Microbe Interact, vol.19, pp.557-563, 2006. ,
A real-time rt-pcr assay for quantifying the fitness of tobacco etch virus in competition experiments, J Virol Methods, vol.139, pp.181-188, 2007. ,
Resistance gene replacement in the mosquito culex pipiens: Fitness estimation from long-term cline series, Genetics, vol.182, pp.303-312, 2009. ,
Evolutionary rate at the molecular level, Nature, vol.217, pp.624-626, 1968. ,
Belshaw R (2010) Viral mutation rates, J Virol, vol.84, pp.9733-9748 ,