T. Adams, M. Hockin, K. Mann, S. Everse, G. Rees et al., The crys Ordination and significance testing of microbial community composition derived from terminal restriction fragment length polymorphisms: application of multivariate statistics, Antonie van Leeuwenhoek, vol.86, pp.339-347, 2004.

W. Rice, Sexually antagonistic male adaptation triggered by experimental arrest of female evolution, Nature, vol.381, issue.6579, pp.232-234, 1996.
DOI : 10.1038/381232a0

M. Rodrigues, C. Souza, J. Martins, J. Rego, J. Oliveira et al., Seminal plasma proteins and their relationship with sperm motility in Santa Ines rams, Small Ruminant Research, vol.109, issue.2-3, pp.94-100, 2013.
DOI : 10.1016/j.smallrumres.2012.07.032

K. Rowe, M. Reno, D. Richmond, R. Adkins, and S. Steppan, Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae), Molecular Phylogenetics and Evolution, vol.47, issue.1, pp.84-101, 2008.
DOI : 10.1016/j.ympev.2008.01.001

C. Shao, V. Novakovic, J. Head, B. Seaton, and G. Gilbert, Crystal Structure of Lactadherin C2 Domain at 1.7A Resolution with Mutational and Computational Analyses of Its Membrane-binding Motif, Journal of Biological Chemistry, vol.283, issue.11, pp.7230-7241, 2008.
DOI : 10.1074/jbc.M705195200

C. Souza, J. Rego, C. Lobo, J. Oliveira, F. Nogueira et al., Proteomic analysis of the reproductive tract fluids from tropically-adapted Santa Ines rams, Journal of Proteomics, vol.75, issue.14, pp.4436-4456, 2012.
DOI : 10.1016/j.jprot.2012.05.039

M. Stoline, The status of multiple comparisons: simultaneous estimation of all pairwise comparisons in oneway ANOVA designs, The American Statistician, vol.35, pp.134-141, 1981.

J. Storey and R. Tibshirani, Statistical significance for genomewide studies, Proceedings of the National Academy of Sciences, vol.100, issue.16, pp.9440-9445, 2003.
DOI : 10.1073/pnas.1530509100

M. Suyama, D. Torrents, and P. Bork, PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments, Nucleic Acids Research, vol.34, issue.Web Server, pp.609-612, 2006.
DOI : 10.1093/nar/gkl315

W. Swanson, A. Clark, H. Waldripdail, M. Wolfner, and C. Aquadro, Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila, Proceedings of the National Academy of Sciences, vol.98, issue.13, pp.7375-7379, 2001.
DOI : 10.1073/pnas.131568198

W. Swanson, R. Nielsen, and Q. Yang, Pervasive Adaptive Evolution in Mammalian Fertilization Proteins, Molecular Biology and Evolution, vol.20, issue.1, pp.18-20, 2003.
DOI : 10.1093/oxfordjournals.molbev.a004233

W. Swanson, A. Wong, M. Wolfner, and C. Aquadro, Evolutionary Expressed Sequence Tag Analysis of Drosophila Female Reproductive Tracts Identifies Genes Subjected to Positive Selection, Genetics, vol.168, issue.3, pp.1457-1465, 2004.
DOI : 10.1534/genetics.104.030478

J. Thompson, D. Higgins, and T. Gibson, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994.
DOI : 10.1093/nar/22.22.4673

X. Tian, G. Pascal, S. Fouchécourt, P. Pontarotti, and P. Monget, Gene Birth, Death, and Divergence: The Different Scenarios of Reproduction-Related Gene Evolution1, Biology of Reproduction, vol.80, issue.4, pp.616-621, 2009.
DOI : 10.1095/biolreprod.108.073684

P. Vignaud, P. Duringer, H. Mackaye, A. Likius, C. Blondel et al., Geology and palaeontology of the Upper Miocene Toros-Menalla hominid locality, Chad, Nature, vol.371, issue.8, pp.152-155, 2002.
DOI : 10.1038/35084058

B. Wagstaff and D. Begun, Adaptive Evolution of Recently Duplicated Accessory Gland Protein Genes in Desert Drosophila, Genetics, vol.177, issue.2, pp.1023-1030, 2007.
DOI : 10.1534/genetics.107.077503

B. Wagstaff and D. Begun, Comparative Genomics of Accessory Gland Protein Genes in Drosophila melanogaster and D. pseudoobscura, Molecular Biology and Evolution, vol.22, issue.4, pp.818-832, 2005.
DOI : 10.1093/molbev/msi067

B. Wagstaff and D. Begun, Molecular Population Genetics of Accessory Gland Protein Genes and Testis-Expressed Genes in Drosophila mojavensis and D. arizonae, Genetics, vol.171, issue.3, pp.1083-1101, 2005.
DOI : 10.1534/genetics.105.043372

J. Walters and R. Harrison, Combined EST and Proteomic Analysis Identifies Rapidly Evolving Seminal Fluid Proteins in Heliconius Butterflies, Molecular Biology and Evolution, vol.27, issue.9, pp.2000-2013, 2010.
DOI : 10.1093/molbev/msq092

M. Wolfner, The gifts that keep on giving: physiological functions and evolutionary dynamics of male seminal proteins in Drosophila, Heredity, vol.88, issue.2, pp.85-93, 2002.
DOI : 10.1038/sj.hdy.6800017

W. Wong, Z. Yang, N. Goldman, and R. Nielsen, Accuracy and Power of Statistical Methods for Detecting Adaptive Evolution in Protein Coding Sequences and for Identifying Positively Selected Sites, Genetics, vol.168, issue.2, pp.1041-1051, 2004.
DOI : 10.1534/genetics.104.031153

Z. Yang, Maximum Likelihood Estimation on Large Phylogenies and Analysis of Adaptive Evolution in Human Influenza Virus A, Journal of Molecular Evolution, vol.51, issue.5, pp.423-432, 2000.
DOI : 10.1007/s002390010105

Z. Yang, PAML 4: Phylogenetic Analysis by Maximum Likelihood, Molecular Biology and Evolution, vol.24, issue.8, pp.1586-1591, 2007.
DOI : 10.1093/molbev/msm088

Z. Yang and R. Nielsen, Codon-Substitution Models for Detecting Molecular Adaptation at Individual Sites Along Specific Lineages, Molecular Biology and Evolution, vol.19, issue.6, pp.908-917, 2002.
DOI : 10.1093/oxfordjournals.molbev.a004148

Z. Yang, W. Wong, and R. Nielsen, Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection, Molecular Biology and Evolution, vol.22, issue.4, pp.1107-1118, 2005.
DOI : 10.1093/molbev/msi097

J. Zhang, R. Nielsen, and Z. Yang, Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level, Molecular Biology and Evolution, vol.22, issue.12, pp.2472-2479, 2005.
DOI : 10.1093/molbev/msi237