Mucosal healing in inflammatory bowel disease: Treatment efficacy and predictive factors, Dig. Liver Dis, vol.45, pp.978-985, 2013. ,
Looking beyond symptom relief: Evolution of mucosal healing in inflammatory bowel disease, Therap. Adv. Gastroenterol, vol.4, pp.129-143, 2011. ,
Clinical implications of mucosal healing for the management of IBD, Nat. Rev. Gastroenterol. Hepatol, vol.7, pp.15-29, 2010. ,
Importance of nutrition in inflammatory bowel disease, World J. Gastroenterol, vol.15, pp.2081-2088, 2009. ,
Nutrition and adult inflammatory bowel disease, Aliment. Pharmacol. Ther, vol.17, pp.307-320, 2003. ,
Nutritional deficiencies in inflammatory bowel disease: Therapeutic approaches, Clin. Nutr, vol.32, pp.904-910, 2013. ,
Nutrition in inflammatory bowel disease, JPEN. J. Parenter. Enteral Nutr, vol.35, pp.571-580, 2011. ,
Nutrition and inflammatory bowel disease, Gastroenterol. Clin. N. Am, vol.28, pp.423-443, 1999. ,
ESPEN guideline: Clinical nutrition in inflammatory bowel disease, Clin. Nutr, vol.36, pp.321-347, 2016. ,
Nutrition support for pediatric patients with inflammatory bowel disease: A clinical report of the North American Society for Pediatric Gastroenterology, Hepatology and Nutrition, J. Pediatr. Gastroenterol. Nutr, vol.39, pp.15-27, 2004. ,
Pre-illness dietary factors in inflammatory bowel disease, Gut, vol.40, pp.754-760, 1997. ,
El-Serag, H. Dietary intake and risk of developing inflammatory bowel disease: A systematic review of the literature, Am. J. Gastroenterol, vol.106, pp.563-573, 2011. ,
Epidemiologic analysis of Crohn disease in Japan: Increased dietary intake of n-6 polyunsaturated fatty acids and animal protein relates to the increased incidence of Crohn disease in Japan, Am. J. Clin. Nutr, vol.63, pp.741-745, 1996. ,
Animal protein intake and risk of inflammatory bowel disease: The E3N prospective study, Am. J. Gastroenterol, vol.105, pp.2195-2201, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00486175
Review article: The association of diet with onset and relapse in patients with inflammatory bowel disease, Aliment. Pharmacol. Ther, vol.38, pp.1172-1187, 2013. ,
Dietary habits as risk factors for inflammatory bowel disease, Eur. J. Gastroenterol. Hepatol, vol.7, pp.47-51, 1995. ,
Ileal losses of nitrogen and amino acids in humans and their importance to the assessment of amino acid requirements, Gastroenterology, vol.123, pp.50-59, 2002. ,
Protein absorption and ammonia production: The effects of dietary protein and removal of the colon, Br. J. Nutr, vol.35, pp.61-65, 1976. ,
Effect of meat and resistant starch on fecal excretion of apparent N-nitroso compounds and ammonia from the human large bowel, Nutr. Cancer, vol.29, pp.13-23, 1997. ,
Net postprandial utilization of [15N]-labeled milk protein nitrogen is influenced by diet composition in humans, J. Nutr, vol.129, pp.890-895, 1999. ,
Nutritional value of [15N]-soy protein isolate assessed from ileal digestibility and postprandial protein utilization in humans, J. Nutr, vol.129, pp.1992-1997, 1999. ,
High-protein diet modifies colonic microbiota and luminal environment but not colonocyte metabolism in the rat model: The increased luminal bulk connection, Am. J. Physiol. Gastrointest. Liver Physiol, vol.307, pp.459-470, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01173417
The colonic microbiome and epithelial transcriptome are altered in rats fed a high-protein diet compared with a normal-protein diet, J. Nutr, vol.146, pp.474-483, 2016. ,
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients, Proc. Natl. Acad. Sci, vol.105, pp.16731-16736, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00652961
Dietary red meat aggravates dextran sulfate sodium-induced colitis in mice whereas resistant starch attenuates inflammation, Dig. Dis. Sci, vol.58, pp.3475-3482, 2013. ,
Dual effects of a high-protein diet on DSS-treated mice during colitis resolution phase, Am. J. Physiol. Gastrointest. Liver Physiol, vol.311, pp.624-633, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01488439
Function of the intestinal epithelium and its dysregulation in inflammatory bowel disease, Inflamm. Bowel Dis, vol.17, pp.382-395, 2011. ,
The gut microbiota and inflammatory bowel disease, Semin. Immunopathol, vol.37, pp.47-55, 2015. ,
A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis, Gut, vol.63, pp.1275-1283, 2014. ,
Butyrate utilization by the colonic mucosa in inflammatory bowel diseases: A transport deficiency, Inflamm. Bowel Dis, vol.16, pp.684-695, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01173382
Down-regulation of monocarboxylate transporter 1 (MCT1) gene expression in the colon of piglets is linked to bacterial protein fermentation and pro-inflammatory cytokine-mediated signalling, Br. J. Nutr, vol.113, pp.610-617, 2015. ,
Roles for Intestinal Bacteria, Viruses, and Fungi in Pathogenesis of Inflammatory Bowel Diseases and Therapeutic Approaches, Gastroenterology, vol.152, pp.327-339, 2017. ,
Metabolomics in the clinical diagnosis of inflammatory bowel disease, Dig. Dis, vol.33, pp.2-10, 2015. ,
Rapid and noninvasive metabonomic characterization of inflammatory bowel disease, J. Proteome Res, vol.6, pp.546-551, 2007. ,
Metabonomics of human fecal extracts characterize ulcerative colitis, Crohn's disease and healthy individuals, Metabolomics, vol.11, pp.122-133, 2015. ,
Metabolomics of fecal extracts detects altered metabolic activity of gut microbiota in ulcerative colitis and irritable bowel syndrome, J. Proteome Res, vol.10, pp.4208-4218, 2011. ,
Characterization of inflammatory bowel disease with urinary metabolic profiling, Am. J. Gastroenterol, vol.104, pp.1435-1444, 2009. ,
Volatile organic compounds from feces and their potential for diagnosis of gastrointestinal disease, FASEB J, vol.21, pp.1675-1688, 2007. ,
Fecal hydrogen sulfide production in ulcerative colitis, Am. J. Gastroenterol, vol.93, pp.83-87, 1998. ,
The contribution of sulphate reducing bacteria and 5-aminosalicylic acid to faecal sulphide in patients with ulcerative colitis, Gut, vol.46, pp.64-72, 2000. ,
Microbial pathways in colonic sulfur metabolism and links with health and disease, Front. Physiol, vol.3, p.448, 2012. ,
Luminal sulfide and large intestine mucosa: Friend or foe?, Amino Acids, vol.39, pp.335-347, 2010. ,
Analysis of volatile organic compounds of bacterial origin in chronic gastrointestinal diseases, Inflamm. Bowel Dis, vol.19, pp.2069-2078, 2013. ,
Faecal metabolite profiling identifies medium-chain fatty acids as discriminating compounds in IBD, Gut, vol.64, pp.447-458, 2015. ,
The deleterious metabolic and genotoxic effects of the bacterial metabolite p-cresol on colonic epithelial cells. Free Radic, Biol. Med, vol.85, pp.219-227, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01568625
Detrimental effects for colonocytes of an increased exposure to luminal hydrogen sulfide: The adaptive response. Free Radic, Biol. Med, vol.93, pp.155-164, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01568610
Metabolic capacity for L-citrulline synthesis from ammonia in rat isolated colonocytes, Biochim. Biophys. Acta, vol.1427, pp.401-407, 1999. ,
Adaptative increase of ornithine production and decrease of ammonia metabolism in rat colonocytes after hyperproteic diet ingestion, Am. J. Physiol. Gastrointest. Liver Physiol, vol.287, pp.344-351, 2004. ,
Antagonistic effects of sulfide and butyrate on proliferation of colonic mucosa: A potential role for these agents in the pathogenesis of ulcerative colitis, Dig. Dis. Sci, vol.41, pp.2477-2481, 1996. ,
Stimulation of epithelial cell proliferation of isolated distal colon of rats by continuous colonic infusion of ammonia or short-chain fatty acids is nonadditive, J. Nutr, vol.128, pp.843-847, 1998. ,
Adaptative metabolic response of human colonic epithelial cells to the adverse effects of the luminal compound sulfide, Biochim. Biophys. Acta, vol.1725, pp.201-212, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00101334
Channelling of arginine in NO and polyamine pathways in colonocytes and consequences, Front. Biosci, vol.16, pp.1331-1343, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01001463
Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon, Proc. Natl. Acad. Sci, vol.112, pp.10038-10043, 2015. ,
Sulfide as a Mucus Barrier-Breaker in Inflammatory Bowel Disease?, Trends Mol. Med, vol.22, pp.190-199, 2016. ,
Effect of colonic bacterial metabolites on Caco-2 cell paracellular permeability in vitro, Nutr. Cancer, vol.60, pp.259-266, 2008. ,
Commensal bacteria-dependent indole production enhances epithelial barrier function in the colon, PLoS ONE, vol.8, pp.1-10, 2013. ,
The bacterial signal indole increases epithelial-cell tight-junction resistance and attenuates indicators of inflammation, Proc. Natl. Acad. Sci, vol.107, pp.228-233, 2010. ,
Dietary protein excess during neonatal life alters colonic microbiota and mucosal response to inflammatory mediators later in life in female pigs, J. Nutr, vol.143, pp.1225-1232, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01594355
Symbiotic bacterial metabolites regulate gastrointestinal barrier function via the xenobiotic sensor PXR and Toll-like receptor 4, Immunity, vol.41, pp.296-310, 2014. ,
Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22, Immunity, vol.39, pp.372-385, 2013. ,
Microbiota-modulated metabolites shape the intestinal microenvironment by regulating NLRP6 inflammasome signaling, Cell, vol.163, pp.1428-1443, 2015. ,
Sulfide-detoxifying enzymes in the human colon are decreased in cancer and upregulated in differentiation, Am. J. Physiol. Gastrointest. Liver Physiol, vol.291, pp.288-296, 2006. ,
Decreased mucosal sulfide detoxification capacity in patients with Crohn's disease, Inflamm. Bowel Dis, vol.19, pp.70-72, 2013. ,
Impaired sulphation of phenol by the colonic mucosa in quiescent and active ulcerative colitis, Gut, vol.32, pp.46-49, 1991. ,
Detoxification of H(2)S by differentiated colonic epithelial cells: Implication of the sulfide oxidizing unit and of the cell respiratory capacity, Antioxid. Redox Signal, vol.17, pp.1-10, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00966772
Deleterious Effect of p-Cresol on Human Colonic Epithelial Cells Prevented by Proanthocyanidin-Containing Polyphenol Extracts from Fruits and Proanthocyanidin Bacterial Metabolites, J. Agric. Food Chem, vol.64, pp.3574-3583, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01568614
Use of parenteral nutrition in patients with inflammatory bowel disease, Gastroenterol. Hepatol, vol.8, pp.393-395, 2012. ,
Comprehensive nutritional status in recently diagnosed patients with inflammatory bowel disease compared with population controls, Eur. J. Clin. Nutr, vol.54, pp.514-521, 2000. ,
Mechanisms of decreased food intake during weight loss in adult Crohn's disease patients without obvious malabsorption, Am. J. Clin. Nutr, vol.60, pp.775-781, 1994. ,
Management of pediatric ulcerative colitis: Joint ECCO and ESPGHAN evidence-based consensus guidelines, J. Pediatr. Gastroenterol. Nutr, vol.55, pp.340-361, 2012. ,
Meta-analysis of nitrogen balance studies for estimating protein requirements in healthy adults 1-3. Am, J. Clin. Nutr, vol.77, pp.109-127, 2003. ,
Ulcerative colitis practice guidelines in adults: American College of Gastroenterology, Practice Parameters Committee, Am. J. Gastroenterol, vol.105, pp.501-523, 2010. ,
Dietary beliefs and behavior among inflammatory bowel disease patients, Inflamm. Bowel Dis, vol.19, pp.66-72, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01701168
Epithelial restitution and wound healing in inflammatory bowel disease, World J. Gastroenterol, vol.14, pp.348-353, 2008. ,
Mucosal healing in inflammatory bowel diseases: A systematic review, Gut, vol.61, pp.1619-1635, 2012. ,
Amino acids and gut function, Amino Acids, vol.37, pp.105-110, 2009. ,
Novel, objective, multivariate biomarkers composed of plasma amino acid profiles for the diagnosis and assessment of inflammatory bowel disease, PLoS ONE, vol.7, 2012. ,
Bioactive dietary peptides and amino acids in inflammatory bowel disease, Amino Acids, vol.47, pp.2127-2141, 2015. ,
Corthésy-Theulaz, I. Specific amino acids increase mucin synthesis and microbiota in dextran sulfate sodium-treated rats, J. Nutr, vol.136, pp.1558-1564, 2006. ,
Beneficial effects of an amino acid mixture on colonic mucosal healing in rats, Inflamm. Bowel Dis, vol.19, pp.2895-2905, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01186910
Amino acid metabolism in intestinal bacteria: Links between gut ecology and host health, Front. Biosci, vol.16, pp.1768-1786, 2011. ,
Potential for amino acids supplementation during inflammatory bowel diseases, Inflamm. Bowel Dis, vol.16, pp.518-524, 2010. ,
Metabolism and functions of L-glutamate in the epithelial cells of the small and large intestines, Am. J. Clin. Nutr, vol.90, pp.814-821, 2009. ,
Low intestinal glutamine level and low glutaminase activity in Crohn's disease: A rational for glutamine supplementation?, Dig. Dis. Sci, vol.51, pp.2170-2179, 2006. ,
Dietary glutamine supplementation prevents mucosal injury and modulates intestinal epithelial restitution following acetic acid induced intestinal injury in rats, Nutr. Metab, vol.10, 2013. ,
Glutamine prevents fibrosis development in rats with colitis induced by 2,4,6-trinitrobenzene sulfonic acid, J. Nutr, vol.140, pp.1065-1071, 2010. ,
Double-blind randomized controlled trial of glutamine-enriched polymeric diet in the treatment of active Crohn's disease, J. Pediatr. Gastroenterol. Nutr, vol.30, pp.78-84, 2000. ,
L-Tryptophan exhibits therapeutic function in a porcine model of dextran sodium sulfate (DSS)-induced colitis, J. Nutr. Biochem, vol.21, pp.468-475, 2010. ,
Protective effect of tryptophan against dextran sulfate sodium-induced experimental colitis, Turk. J. Gastroenterol, vol.24, pp.30-35, 2013. ,
ACE2 links amino acid malnutrition to microbial ecology and intestinal inflammation, Nature, vol.487, pp.477-481, 2012. ,
Indoleamine 2,3 dioxygenase in intestinal disease, Curr. Opin. Gastroenterol, vol.29, pp.146-452, 2013. ,
Histological and immunohistochemical effects of L-arginine and silymarin on TNBS-induced inflammatory bowel disease in rats, Histol. Histopathol, vol.31, pp.1259-1270, 2016. ,
Serum amino acids profile and the beneficial effects of L-arginine or L-glutamine supplementation in dextran sulfate sodium colitis, PLoS ONE, vol.9, 2014. ,
Pretreatment and Treatment With L-Arginine Attenuate Weight Loss and Bacterial Translocation in Dextran Sulfate Sodium Colitis, J. Parenter. Enter. Nutr, vol.40, pp.1131-1139, 2016. ,
L-arginine supplementation improves responses to injury and inflammation in dextran sulfate sodium colitis, PLoS ONE, vol.7, 2012. ,
L-cysteine supplementation attenuates local inflammation and restores gut homeostasis in a porcine model of colitis, Biochim. Biophys. Acta, vol.1790, pp.1161-1169, 2009. ,
Dietary histidine ameliorates murine colitis by inhibition of proinflammatory cytokine production from macrophages, Gastroenterology, vol.136, pp.564-574, 2009. ,
Dietary glycine prevents chemical-induced experimental colitis in the rat, Gastroenterology, vol.125, pp.775-785, 2003. ,
Anti-inflammatory effects of poly-L-lysine in intestinal mucosal system mediated by calcium-sensing receptor activation, J. Agric. Food Chem, vol.63, pp.10437-10447, 2015. ,
Chronic inflammation alters protein metabolism in several organs of adult rats, J. Nutr, vol.132, pp.1921-1928, 2002. ,
Increased tissue protein synthesis during spontaneous inflammatory bowel disease in HLA-B27 rats, Clin. Sci, vol.105, pp.437-446, 2003. ,
Protein synthesis rates in colon and liver: Stimulation by gastrointestinal pathologies, Gut, vol.33, pp.976-981, 1992. ,