A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity, PLOS ONE, vol.16, issue.9, 2015. ,
DOI : 10.1371/journal.pone.0137784.s006
URL : https://hal.archives-ouvertes.fr/hal-01237967
Complex Carbohydrate Utilization by the Healthy Human Microbiome, PLoS ONE, vol.5, issue.6, 2012. ,
DOI : 10.1371/journal.pone.0028742.s007
URL : http://doi.org/10.1371/journal.pone.0028742
The Application of Ecological Theory Toward an Understanding of the Human Microbiome, Science, vol.136, issue.43, pp.1255-1262, 2012. ,
DOI : 10.1007/s00442-003-1311-7
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota, Nature Reviews Microbiology, vol.6, issue.7, pp.497-504, 1038. ,
DOI : 10.1038/ismej.2012.4
Development and Validation of a Microarray for the Investigation of the CAZymes Encoded by the Human Gut Microbiome, PLoS ONE, vol.153, issue.12, 2013. ,
DOI : 10.1371/journal.pone.0084033.s005
Full-length transcriptome assembly from RNA-Seq data without a reference genome, Nature Biotechnology, vol.30, issue.7, pp.644-652, 2011. ,
DOI : 10.1101/GR.229202. ARTICLE PUBLISHED ONLINE BEFORE MARCH 2002
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571712
Biomass use, production, feed efficiencies, and greenhouse gas emissions from global livestock systems, Proceedings of the National Academy of Sciences, vol.107, issue.46, pp.20888-20893, 2013. ,
DOI : 10.1073/pnas.0912890107
URL : http://www.pnas.org/content/110/52/20888.full.pdf
Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen, Science, vol.24, issue.10, pp.463-467, 2011. ,
DOI : 10.1038/nbt1247
The Sequence Read Archive, Nucleic Acids Research, vol.39, issue.Database, pp.19-21, 2011. ,
DOI : 10.1093/nar/gkq1019
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013647
Evolution of Mammals and Their Gut Microbes, Science, vol.99, issue.12, pp.1647-1651, 2008. ,
DOI : 10.1073/pnas.102164299
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2649005
The carbohydrate-active enzymes database (CAZy) in 2013, Nucleic Acids Research, vol.42, issue.D1, pp.490-495, 1178. ,
DOI : 10.1093/nar/gkt1178
Genome analyses highlight the different biological roles of cellulases, Nature Reviews Microbiology, vol.12, issue.3, pp.227-234, 1038. ,
DOI : 10.1016/j.cbpa.2008.05.010
Rumen microbial (meta)genomics and its application to ruminant production, animal, vol.2, issue.167, pp.184-201, 1017. ,
DOI : 10.1038/nature06244
URL : https://www.cambridge.org/core/services/aop-cambridge-core/content/view/882E55627CB16C4D89226DF66517C808/S1751731112000419a.pdf/div-class-title-rumen-microbial-meta-genomics-and-its-application-to-ruminant-production-div.pdf
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans, Science, vol.8, issue.11, pp.970-974, 2011. ,
DOI : 10.1371/journal.pbio.1000546
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303602
Vegan: Community Ecology Package. R Package Version 2, pp.4-6, 2017. ,
Comparison of DNA Sequences with Protein Sequences, Genomics, vol.46, issue.1, pp.24-36, 1997. ,
DOI : 10.1006/geno.1997.4995
A human gut microbial gene catalogue established by metagenomic sequencing, R Foundation for Statistical Computing. Available online at, pp.59-65, 2010. ,
DOI : 10.1101/gr.229202. Article published online before March 2002
URL : https://hal.archives-ouvertes.fr/cea-00908974
Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores, Nature Communications, vol.39, pp.8285-8295, 1038. ,
DOI : 10.1093/nar/gkq1189
URL : http://www.nature.com/articles/ncomms9285.pdf
ggplot2: Elegant Graphics for Data Analysis, 2009. ,