Evolution, consequences and future of plant and animal domestication, Nature, vol.418, pp.700-707, 2002. ,
Contrasting patterns in crop domestication and domestication rates: recent Archaeobotanical insights from the old world, Ann Bot, vol.100, pp.903-927, 2007. ,
The nature of selection during plant domestication, Nature, vol.457, pp.843-851, 2009. ,
Foraging and Farming: The Evolution of Plant Exploitation, pp.11-26, 1989. ,
Archaeological data reveal slow rates of evolution during plant domestication, Evolution, vol.65, pp.171-83, 2011. ,
Evolution of crop species: genetics of domestication and diversification, Nat Rev Genet, vol.14, pp.840-52, 2013. ,
The evolutionary ecology of clonally propagated domesticated plants, New Phytol, vol.186, pp.318-350, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-02349704
Genetic diversity and selection in the maize starch pathway, Proc Natl Acad Sci, vol.99, pp.12959-62, 2002. ,
Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport, Nat Genet, vol.47, pp.1489-93, 2015. ,
Dioscorea Ssp.) domestication by the Nago and Fon ethnic groups in Benin, Genet Resour Crop Evol, vol.50, pp.519-547, 2003. ,
, origine génétique des ignames cultivées du complexe Dioscorea cayenensis-rotundata et domestication des ignames en Afrique de l'Ouest, vol.11
Origin and phylogeny of Guinea yams as revealed by RFLP analysis of chloroplast DNA and nuclear ribosomal DNA, TAG Theor Appl Genet Theor Angew Genet, vol.83, pp.743-51, 1992. ,
Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin, Mol Ecol, vol.15, pp.2421-2452, 2006. ,
Nextgeneration sequencing based genotyping, cytometry and phenotyping for understanding diversity and evolution of guinea yams, Theor Appl Genet, vol.127, pp.1783-94, 2014. ,
Étude des index d'ADN de huit espèces d'ignames (Dioscorea sp.) par cytométrie en flux, Can J Bot, vol.70, pp.996-1000, 1992. ,
Segregation patterns of isozyme loci and microsatellite markers show the diploidy of African yam Dioscorea Rotundata (2n = 40), TAG Theor Appl Genet Theor Angew Genet, vol.111, pp.226-258, 2005. ,
Clonal diversity and estimation of relative clone age: application to agrobiodiversity of yam (Dioscorea Rotundata), BMC Plant Biol, vol.13, p.178, 2013. ,
Les ignames sauvages d'Afrique de l'ouest : caractéristiques morphologiques = Wild yams in West Africa : morphological characteristics -010004065.pdf, 1995. ,
Effect of photoperiod on the development of inflorescences in white Guinea yam (Dioscorea Rotundata) ,
, Trop Sci, vol.45, pp.126-156, 2005.
Costeffective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies, Mol Ecol Resour, vol.14, pp.1103-1116, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02637033
Intraindividual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?, Mol Ecol Resour, vol.16, pp.434-479, 2015. ,
Cutadapt removes adapter sequences from high-throughput sequencing reads, EMBnet J, vol.17, pp.10-12, 2011. ,
Fast and accurate short read alignment with burrowswheeler transform, Bioinforma Oxf Engl, vol.25, pp.1754-60, 2009. ,
A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives, Mol Ecol Resour, vol.17, pp.565-580, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01930391
SNP detection for massively parallel whole-genome resequencing, Genome Res, vol.19, pp.1124-1156, 2009. ,
The genome analysis toolkit: a MapReduce framework for analyzing nextgeneration DNA sequencing data, Genome Res, vol.20, pp.1297-303, 2010. ,
Fast and efficient estimation of individual ancestry coefficients, Genetics, vol.196, pp.973-83, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01119670
Estimating individual admixture proportions from next generation sequencing data, Genetics, vol.195, pp.693-702, 2013. ,
Molecular evolutionary genetics, 1987. ,
On the number of segregating sites in genetical models without recombination, Theor Popul Biol, vol.7, pp.256-76, 1975. ,
Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data, BMC Bioinformatics, vol.14, p.289, 2013. ,
Linkage disequilibrium in finite populations, TAG Theor Appl Genet Theor Angew Genet, vol.38, pp.226-257, 1968. ,
A Highperformance Computing Toolset for Relatedness and Principal Component Analysis of SNP Data, Bioinformatics, vol.28, pp.3326-3332, 2012. ,
LDcorSV: Linkage disequilibrium corrected by the structure and the relatedness, 2013. ,
The variant call format and VCFtools, Bioinformatics, vol.27, pp.2156-2164, 2011. ,
Estimation of levels of gene flow from DNA sequence data, Genetics, vol.132, pp.583-592, 1992. ,
Detecting genomic signatures of natural selection with principal component analysis: application to the 1000 Genomes data. ArXiv150404543 Q-Bio, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01280469
On the generalized distance in statistics, Proceedings National Institute of Science, vol.2, pp.49-55, 1936. ,
Qvalue: Q-value estimation for false discovery rate control, 2010. ,
REVIGO summarizes and visualizes long lists of gene ontology terms, PLoS One, vol.6, p.21800, 2011. ,
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure, Bioinforma Oxf Engl, vol.22, pp.1600-1607, 2006. ,
Two SCARECROW-LIKE genes are induced in response to exogenous auxin in rooting-competent cuttings of distantly related forest species, Tree Physiol, vol.27, pp.1459-70, 2007. ,
Funneling of gibberellin signaling by the GRAS transcription regulator SCARECROW-LIKE 3 in the Arabidopsis root, Proc Natl Acad Sci, vol.108, pp.2166-71, 2011. ,
Sucrose synthase activity in the sus1/sus2/sus3/sus4 Arabidopsis mutant is sufficient to support normal cellulose and starch production, Proc Natl Acad Sci, vol.109, pp.321-327, 2012. ,
Role and regulation of sucrose-phosphate synthase in higher plants, Annu Rev Plant Physiol Plant Mol Biol, vol.47, pp.431-475, 1996. ,
EIN4 and ERS2 are members of the putative ethylene receptor gene family in Arabidopsis, Plant Cell, vol.10, pp.1321-1353, 1998. ,
Phototropins promote plant growth in response to blue light in low light environments, Plant Cell, vol.17, pp.1120-1127, 2005. ,
Evolutionary history of pearl millet (Pennisetum Glaucum [L.] R. Br.) and selection on flowering genes since its domestication, Mol Biol Evol, vol.29, pp.1199-212, 2012. ,
The effects of artificial selection on the maize genome, Science, vol.308, pp.1310-1314, 2005. ,
Haplotype structure at seven barley genes: relevance to gene pool bottlenecks, phylogeny of ear type and site of barley domestication, Mol Genet Genomics MGG, vol.276, pp.230-271, 2006. ,
Grinding up wheat: a massive loss of nucleotide diversity since domestication, Mol Biol Evol, vol.24, pp.1506-1523, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00697942
First controlled progenies checked by isozymic markers in cultivated yams Dioscorea Cayenensis-Rotundata, Theor Appl Genet, vol.88, pp.1011-1017, 1994. ,
Structure of linkage disequilibrium and phenotypic associations in the maize genome, Proc Natl Acad Sci U S A, vol.98, pp.11479-84, 2001. ,
Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea Mays Ssp. Mays L.), Proc Natl Acad Sci U S A, vol.98, pp.9161-9167, 2001. ,
Maize HapMap2 identifies extant variation from a genome in flux, Nat Genet, vol.44, pp.803-810, 2012. ,
Population structure and its effect on Haplotype diversity and linkage disequilibrium surrounding the xa5 locus of Rice, Oryza Sativa L.). Genetics, vol.165, pp.759-69, 2003. ,
An analysis of genetic diversity across the maize genome using microsatellites, Genetics, vol.169, pp.1617-1647, 2005. ,
Comparative population genomics of maize domestication and improvement, Nat Genet, vol.44, pp.808-819, 2012. ,
Genome-wide scans for footprints of natural selection, Philos Trans R Soc Lond Ser B Biol Sci, vol.365, pp.185-205, 2010. ,
Ethylene in plant biology, Cell, vol.72, pp.11-13, 1993. ,
Domestication and the storage starch biosynthesis pathway: signatures of selection from a whole sorghum genome sequencing strategy, Plant Biotechnol J, vol.14, pp.2240-2253, 2016. ,
Global selection on sucrose synthase haplotypes during a century of wheat breeding, Plant Physiol, vol.164, pp.1918-1947, 2014. ,
Enhancing sucrose synthase activity results in increased levels of starch and ADP-glucose in maize (Zea Mays L.) seed endosperms, Plant Cell Physiol, vol.54, pp.282-94, 2013. ,
Regulation of the expression of chloroplast ndh genes by light intensity applied during oat plant growth, Plant Sci, vol.168, pp.1561-1570, 2005. ,
New subunits NDH-M, ?N, and -O, encoded by nuclear genes, are essential for plastid Ndh complex functioning in higher plants, Plant Cell, vol.17, pp.219-251, 2005. ,
Association of ferredoxin-NADP oxidoreductase with the chloroplastic pyridine nucleotide dehydrogenase complex in barley leaves, Plant Physiol, vol.117, pp.235-279, 1998. ,
Stimulation of chlororespiration by heat and high light intensity in oat plants, Plant Cell Environ, vol.29, pp.1463-70, 2006. ,
Photoinhibition of photosystems I and II induced by exposure to high light intensity during oat plant growth: effects on the chloroplast NADH dehydrogenase complex, Plant Sci, vol.166, pp.815-838, 2004. ,
The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli, Sci Signal, vol.2, p.45, 2009. ,
ROS as key players in plant stress signalling, J Exp Bot, vol.28, pp.3326-3328, 2012. ,
Chlororespiration is involved in the adaptation of Brassica plants to heat and high light intensity, Plant Cell Environ, vol.30, pp.1578-85, 2007. ,