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Article Dans Une Revue Nucleic Acids Research Année : 2018

MetExplore: collaborative edition and exploration of metabolic networks

Clément Frainay
Etienne Camenen
  • Fonction : Auteur
  • PersonId : 1037073
Benjamin Merlet
  • Fonction : Auteur
Nathalie Poupin
Florence Vinson
Fabien Jourdan

Résumé

Metabolism of an organism is composed of hundreds to thousands of interconnected biochemical reactions responding to environmental or genetic constraints. This metabolic network provides a rich knowledge to contextualize omics data and to elaborate hypotheses on metabolic modulations. Nevertheless, performing this kind of integrative analysis is challenging for end users with not sufficiently advanced computer skills since it requires the use of various tools and web servers. MetExplore offers an all-in-one online solution composed of interactive tools for metabolic network curation, network exploration and omics data analysis. In particular, it is possible to curate and annotate metabolic networks in a collaborative environment. The network exploration is also facilitated in MetExplore by a system of interactive tables connected to a powerful network visualization module. Finally, the contextualization of metabolic elements in the network and the calculation of over-representation statistics make it possible to interpret any kind of omics data.
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Dates et versions

hal-01886470 , version 1 (19-06-2019)

Licence

Paternité - Pas d'utilisation commerciale

Identifiants

Citer

Ludovic Cottret, Clément Frainay, Maxime Chazalviel, Floréal Cabanettes, Yoann Gloaguen, et al.. MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Research, 2018, 46 (W1), 8 p. ⟨10.1093/nar/gky301⟩. ⟨hal-01886470⟩
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