G. W. Beakes, H. M. Canter, and H. M. Jaworski, Zoospore ultrastructure of Zygorhizidium affluens and Z.planktonicum, two chytrids parasitizing the diatom Asteriunella formosa, Can. J. Bot, vol.66, pp.1054-1067, 1988.

R. R. Bidigare, J. H. Morrow, and D. A. Kiefer, Derivative analysis of spectral absorption by photosynthetic pigments in the western Sargasso Sea, J. Mar. Res, vol.47, pp.323-341, 1989.

J. Briand, S. Jacquet, C. Bernard, and J. Humbert, Health hazards for terrestrial vertebrates from toxic cyanobacteria in surface water ecosystems, Vet. Res, vol.34, pp.361-77, 2003.
URL : https://hal.archives-ouvertes.fr/hal-00902752

W. W. Carmichael, S. M. Azevedo, J. S. An, R. J. Molica, E. M. Jochimsen et al., Human Fatalities from Cyanobacteria: Chemical and Biological Evidence for Cyanotoxins, Environ. Health Perspect, vol.109, pp.663-668, 2001.

A. Chase, E. Boss, R. Zaneveld, A. Bricaud, H. Claustre et al., Decomposition of in situ particulate absorption spectra, Methods Oceanogr, vol.7, pp.110-124, 2013.

G. Codd, J. Lindsay, F. Young, L. Morrison, and J. Metcalf, Harmful Cyanobacteria. In Harmful cyanobacteria, pp.1-23, 2005.

Y. Cuypers, B. Vinçon-leite, A. Groleau, B. Tassin, and J. Humbert, Impact of internal waves on the spatial distribution of Planktothrix rubescens (cyanobacteria) in an alpine lake, ISME J, vol.5, pp.580-589, 2011.
URL : https://hal.archives-ouvertes.fr/bioemco-00580734

A. G. Dekker and S. W. Peters, The use of the Thematic Mapper for the analysis of eutrophic lakes: A case study in the Netherlands, Int. J. Remote Sens, vol.14, pp.799-821, 1993.

A. G. Dekker, T. J. Malthus, and E. Seyhan, Quantitative modelling of inland water quality for high-resolution MSS systems, IEEE Trans. Geosci. Remote S, vol.19, pp.89-95, 1991.

I. Echenique-subiabre, C. Dalle, C. Duval, M. W. Heath, A. Couté et al., Application of a spectrofluorimetric tool (bbe BenthoTorch) for monitoring potentially toxic benthic cyanobacteria in rivers, Water Res, vol.101, pp.341-350, 2016.

D. Ficek, S. Kaczmarek, J. Sto?-egiert, B. Wo?niak, R. Majchrowski et al., Spectra of light absorption by phytoplankton pigments in the baltic; conclusions to be drawn from a gaussian analysis of empirical data, Oceanologia, vol.46, pp.533-555, 2004.

N. Hoepffner and S. Sathyendranath, Determination of the major groups of phytoplankton pigments from the absorption spectra of total particulate matter, J. Geophys. Res, vol.98, p.22789, 1993.

C. Hu, J. Cannizzaro, K. L. Carder, F. E. Muller-karger, and R. Hardy, Remote detection of Trichodesmium blooms in optically complex coastal waters: Examples with MODIS full-spectral data, Remote Sens. Environ, vol.114, pp.2048-2058, 2010.

C. Hu, Z. Lee, and B. Franz, Chlorophyll a algorithms for oligotrophic oceans: A novel approach based on three-band reflectance difference, J. Geophys. Res. Oceans, vol.117, p.1011, 2012.

K. D. Jöhnk, J. Huisman, J. Sharples, B. Sommeijer, P. M. Visser et al., Summer heatwaves promote blooms of harmful cyanobacteria, Glob. Change Biol, vol.14, pp.495-512, 2008.

R. M. Kudela, S. L. Palacios, D. C. Austerberry, E. K. Accorsi, L. S. Guild et al., Application of hyperspectral remote sensing to cyanobacterial blooms in inland waters, Remote Sens. Environ, vol.167, pp.196-205, 2015.

T. Kuiper-goodman, I. R. Falconer, and J. Fitzgerald, Toxic Cyanobacteria in Water: A Guide to Their Public Health Consequences, Monitoring and Management. E & FN Spon, 1999.

U. K. London, , pp.113-153

L. Li, L. Li, and K. Song, Remote sensing of freshwater cyanobacteria: An extended IOP Inversion Model of Inland Waters (IIMIW) for partitioning absorption coefficient and estimating phycocyanin, Remote Sens. Environ, vol.157, pp.9-23, 2015.

L. Li, L. Li, K. Song, Y. Li, L. P. Tedesco et al., An inversion model for deriving inherent optical properties of inland waters: Establishment, validation and application, Remote Sens. Environ, vol.135, pp.150-166, 2013.

H. Lyu, Q. Wang, C. Wu, L. Zhu, B. Yin et al., Retrieval of phycocyanin concentration from remote-sensing reflectance using a semi-analytic model in eutrophic lakes, Ecol. Inform, vol.18, pp.178-187, 2013.

H. Markensten, K. Moore, and I. Pearson, Simulated lake phytoplankton composition shifts toward cyanobacteria dominance in future warmer climate, Ecol. Appl, vol.20, pp.752-767, 2010.

S. Mishra and D. R. Mishra, Remote sensing of environment normalized difference chlorophyll index: A novel model for remote estimation of chlorophyll-a concentration in turbid productive waters, Remote Sens. Environ, vol.117, pp.394-406, 2012.

S. Mishra, D. R. Mishra, and Z. Lee, Bio-optical inversion in highly turbid and cyanobacteria-dominated waters, IEEE Trans. Geosci. Remote Sens, vol.52, pp.375-388, 2014.

S. Mishra, D. R. Mishra, Z. Lee, and C. S. Tucker, Quantifying cyanobacterial phycocyanin concentration in turbid productive waters: A quasi-analytical approach, Remote Sens. Environ, vol.133, pp.141-151, 2013.

K. H. Mittenzwey, S. Ullrich, A. A. Gitelson, and K. Y. Kondratiev, Determination of chlorophyll-a of inland waters on the basis of spectral reflectance, Limnol. Oceanogr, vol.37, pp.147-149, 1992.

J. R. Moisan, A. Tiffany, H. Moisan, and M. A. Linkswiler, An inverse modeling approach to estimating phytoplankton pigment concentrations from phytoplankton absorption spectra, J. Geophys. Res. Oceans, vol.116, p.6786, 2011.

H. W. Nichols and H. C. Bold, Trichosarcina polymorpha Gen. et Sp. Nov, J. Phycol, vol.1, pp.34-38, 1965.

I. Ogashawara, D. R. Mishra, S. Mishra, M. P. Curtarelli, and J. L. Stech, A performance review of reflectance based algorithms for predicting phycocyanin concentrations in inland waters, Remote Sens, vol.5, pp.4774-4798, 2013.

H. W. Pearl and J. Huisman, Blooms like it hot, Science, vol.320, pp.57-58, 2008.

D. Pobel, J. Robin, and J. Humbert, Influence of sampling strategies on the monitoring of cyanobacteria in shallow lakes: Lessons from a case study in France, Wat. Res, vol.45, pp.1005-1014, 2011.
URL : https://hal.archives-ouvertes.fr/bioemco-00551032

R. Porat, B. Teltsch, A. Perelman, and Z. Dubinsky, Diel Buoyancy Changes by the Cyanobacterium Aphanizomenon ovalisporum from a Shallow Reservoir, J. Plankt. Res, vol.23, pp.753-763, 2001.

C. Quiblier, S. Wood, I. Echenique-subiabre, M. Heath, A. Villeneuve et al., A review of current knowledge on toxic benthic freshwater cyanobacteriaecology, toxin production and risk management, Wat. Res, vol.47, pp.5464-5479, 2013.

J. F. Schalles and Y. Z. Yacobi, Remote detection and seasonal patterns of phycocyanin, carotenoid and chlorophyll pigments in eutrophic waters, Ergeb. Limnol, vol.55, pp.153-168, 2000.

S. G. Simis, S. W. Peters, and H. J. Gons, Remote sensing of the cyanobacterial pigment phycocyanin in turbid inland water, Limnol. Oceanogr, vol.50, pp.237-245, 2005.

O. M. Skulberg and R. Skulberg, Planktic species of Oscillatoria (Cyanophyceae) from Norway, Arch. Hydrobiol. Suppl, vol.71, pp.157-174, 1985.

K. S. Song, L. Li, Z. C. Li, L. Tedesco, B. Hall et al., Remote detection of cyanobacteria through phytocyanin for water supply source using three-band model, Ecol. Inform, vol.15, pp.22-33, 2013.

R. P. Stumpf, T. W. Davis, T. T. Wynne, J. L. Graham, K. A. Loftin et al., Challenges for mapping cyanotoxin patterns from remote sensing of cyanobacteria, Harmful Algae, vol.54, pp.160-173, 2016.

J. F. Talling and D. Driver, Some problems in the estimation of chlorophyll a in phytoplankton, Proc. Conf. on Primary Productivity Measurements, Marine and Freshwater, vol.7633, pp.142-146, 1961.

M. Welker, H. Von-döhren, H. Täuscher, C. E. Steinberg, and M. Erhard, Toxic Microcystis in shallow lake Müggelsee (Germany) -dynamics, distribution, diversity, Archiv Hydrobiol, vol.157, pp.227-248, 2003.

S. W. Wright and S. W. Jeffrey, Pigment markers for phytoplankton production, Reactions and Processes, vol.2, pp.71-104, 2006.

T. T. Wynne, R. P. Stumpf, M. C. Tomlinson, R. A. Warner, P. A. Tester et al., Relating spectral shape to cyanobacterial blooms in the Laurentian Great Lakes, Int. J. Remote Sens, vol.29, pp.3665-3672, 2008.

Y. Z. Yacobi, J. Köhler, F. Leunert, and A. A. Gitelson, Phycocyanin-specific absorption coefficient: Eliminating the effect of chlorophylls absorption, Limnol. Oceanogr. Met, vol.13, pp.157-168, 2015.

, Supplemental Figures

, Supp Fig. 1. Four examples contrasting the measured (in blue) and estimated absorbance (in red) spectra for extracted pigments (left) and cultures (right) for Microcystis sp, p.12

, Supp Fig. 2. Distribution of the model's R² for modeling the absorbance of extracted pigments (left) and the absorbance of monocultures