Auto-transporter a protein of Neisseria meningitidis: a potent CD4+ T-cell and B-cell stimulating antigen detected by expression cloning, Mol. Microbiol, vol.37, pp.1094-1105, 2000. ,
The structure-function linkage database, Nucleic Acids Res, vol.42, 2014. ,
Iterated profile searches with PSI-BLASTa tool for discovery in protein databases, Trends Biochem. Sci, vol.23, pp.444-447, 1998. ,
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee, Nucleic Acids Res, vol.34, pp.604-608, 2006. ,
PRINTS and its automatic supplement, prePRINTS, Nucleic Acids Res, vol.31, pp.400-402, 2003. ,
Mechanical unfolding of an autotransporter passenger protein reveals the secretion starting point and processive transport intermediates, ACS Nano, vol.10, pp.5710-5719, 2016. ,
The Protein Data Bank and the challenge of structural genomics, Nat. Struct. Biol, vol.7, pp.957-959, 2000. ,
The protein data bank, Nucleic Acids Res, vol.28, pp.235-242, 2000. ,
Mutations affecting the biogenesis of the AIDA-I autotransporter, Res. Microbiol, vol.158, pp.348-354, 2007. ,
Serine proteases of Gram-negative bacteria: structure, mechanisms of secretion, biological activity, Zh. Mikrobiol. Epidemiol. Immunobiol, vol.6, pp.80-85, 2002. ,
BETAWRAP: successful prediction of parallel beta -helices from primary sequence reveals an association with many microbial pathogens, Proc. Natl. Acad. Sci. U.S.A, vol.98, pp.14819-14824, 2001. ,
Structure and function relationship of the autotransport and proteolytic activity of EspP from Shiga toxin-producing Escherichia coli, PLoS ONE, vol.4, p.6100, 2009. ,
A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters, PLoS ONE, vol.7, p.43245, 2012. ,
Proteinaceous determinants of surface colonization in bacteria: bacterial adhesion and biofilm formation from a protein secretion perspective, Front. Microbiol, vol.4, p.303, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01204318
The unusual extended signal peptide region of the Type V secretion system is phylogenetically restricted, FEMS Microbiol. Lett, vol.264, pp.22-30, 2006. ,
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue, Trends Microbiol, vol.17, pp.139-145, 2009. ,
Le système de sécrétion de type V chez les bactéries Gram-négatives (Type V secretion system in Gram-negative bacteria), Biofutur, vol.237, pp.34-37, 2003. ,
The autotransporter secretion system, Res. Microbiol, vol.155, pp.53-60, 2004. ,
The general secretory pathway: a general misnomer?, Trends Microbiol, vol.12, pp.306-309, 2004. ,
A conserved extended signal peptide region directs posttranslational protein translocation via a novel mechanism, Microbiology, vol.153, pp.59-70, 2007. ,
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension, Nucleic Acids Res, vol.39, pp.13-17, 2011. ,
X-ray crystal structure of the passenger domain of plasmid encoded toxin (Pet), an autotransporter enterotoxin from enteroaggregative Escherichia coli (EAEC), Biochem. Biophys. Res. Commun, vol.445, pp.439-444, 2014. ,
Of linkers and autochaperones: an unambiguous nomenclature to identify common and uncommon themes for autotransporter secretion, Mol. Microbiol, vol.95, pp.1-16, 2015. ,
Structure-function analysis of the enteroaggregative Escherichia coli plasmid-encoded toxin autotransporter using scanning linker mutagenesis, J. Biol. Chem, vol.278, pp.39912-39920, 2003. ,
Secretion by numbers: protein traffic in prokaryotes, Mol. Microbiol, vol.62, pp.308-319, 2006. ,
Bartonella entry mechanisms into mammalian host cells, Cell. Microbiol, vol.14, pp.1166-1173, 2012. ,
InterPro in 2017-beyond protein family and domain annotations, Nucleic Acids Res, vol.45, pp.190-199, 2017. ,
The Pfam protein families database: towards a more sustainable future, Nucleic Acids Res, vol.44, pp.279-285, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01294685
Crystal structure of the Helicobacter pylori vacuolating toxin p55 domain, Proc. Natl. Acad. Sci. U.S.A, vol.104, pp.16293-16298, 2007. ,
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data, Mol. Biol. Evol, vol.14, pp.685-695, 1997. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00730410
ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins, Nucleic Acids Res, vol.31, pp.3320-3323, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-00314281
The TIGRFAMs database of protein families, Nucleic Acids Res, vol.31, pp.371-373, 2003. ,
Type V secretion pathway: a premium source source of virulence factors?, Drug Discov. Today, vol.9, p.241, 2004. ,
Type V protein secretion pathway: the autotransporter story. Microbiol, Mol. Biol. Rev, vol.68, pp.692-744, 2004. ,
The antigen 43 structure reveals a molecular Velcro-like mechanism of autotransporter-mediated bacterial clumping, Proc. Natl. Acad. Sci. U.S.A, vol.111, pp.457-462, 2014. ,
Structure and evolution of parallel ?-helix proteins, J. Struct. Biol, vol.122, pp.236-246, 1998. ,
InterProScan 5: genome-scale protein function classification, Bioinformatics, vol.30, pp.1236-1240, 2014. ,
The conserved extension of the Hbp autotransporter signal peptide does not determine targeting pathway specificity, Biochem. Biophys. Res. Commun, vol.368, pp.522-527, 2008. ,
Pertactin ?-helix folding mechanism suggests common themes for the secretion and folding of autotransporter proteins, Proc. Natl. Acad. Sci. U.S.A, vol.103, pp.4918-4923, 2006. ,
Beta-helix model for the filamentous haemagglutinin adhesin of Bordetella pertussis and related bacterial secretory proteins, Mol. Microbiol, vol.42, pp.279-292, 2001. ,
The turn of the screw: variations of the abundant ?-solenoid motif in passenger domains of Type V secretory proteins, J. Struct. Biol, vol.155, pp.306-315, 2006. ,
The Phyre2 web portal for protein modeling, prediction and analysis, Nat. Protoc, vol.10, pp.845-858, 2015. ,
Protein structure prediction on the Web: a case study using the Phyre server, Nat. Protoc, vol.4, pp.363-371, 2009. ,
Crystal structure of the passenger domain of the Escherichia coli autotransporter EspP, J. Mol. Biol, vol.413, pp.985-1000, 2011. ,
Drawing explicit phylogenetic networks and their integration into SplitsTree, BMC Evol. Biol, vol.8, p.22, 2008. ,
Crystal structure of the autochaperone region from the Shigella flexneri autotransporter IcsA, J. Bacteriol, vol.193, pp.2042-2045, 2011. ,
Gene3D: expanding the utility of domain assignments, Nucleic Acids Res, vol.44, pp.404-409, 2016. ,
Type V secretion: mechanism(s) of autotransport through the bacterial outer membrane, Philos. Trans. R. Soc. B. Biol. Sci, vol.367, pp.1088-1101, 2012. ,
From self sufficiency to dependence: mechanisms and factors important for autotransporter biogenesis, Nat. Rev. Microbiol, vol.10, pp.213-225, 2012. ,
T-Coffee: tree-based consistency objective function for alignment evaluation, Methods Mol. Biol, vol.1079, pp.117-129, 2014. ,
, , 2017.
, CDD/SPARCLE: functional classification of proteins via subfamily domain architectures, Nucleic Acids Res, vol.45, pp.200-203
Mutagenesis of the Shigella flexneri autotransporter IcsA reveals novel functional regions involved in IcsA biogenesis and recruitment of host neural Wiscott-Aldrich syndrome protein, J. Bacteriol, vol.190, pp.4666-4676, 2008. ,
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements, Nucleic Acids Res, vol.45, pp.183-189, 2017. ,
Autotransporter-based cell surface display in Gram-negative bacteria, Crit. Rev. Microbiol, vol.41, pp.109-123, 2015. ,
T-Coffee: a novel method for fast and accurate multiple sequence alignment, J. Mol. Biol, vol.302, pp.205-217, 2000. ,
3DCoffee: combining protein sequences and structures within multiple sequence alignments, J. Mol. Biol, vol.340, pp.385-395, 2004. ,
Extracellular production of a Serratia marcescens serine protease in Escherichia coli, Biosci. Biotechnol. Biochem, vol.60, pp.1551-1558, 1996. ,
Involvement of the COOH-terminal pro-sequence of Serratia marcescens serine protease in the folding of the mature enzyme, J. Biol. Chem, vol.269, pp.32800-32806, 1994. ,
A conserved region within the Bordetella pertussis autotransporter BrkA is necessary for folding of its passenger domain, Mol. Microbiol, vol.47, pp.1367-1383, 2003. ,
Structure of the translocator domain of a bacterial autotransporter, EMBO J, vol.23, pp.1257-1266, 2004. ,
Crystal structure of hemoglobin protease, a heme binding autotransporter protein from pathogenic Escherichia coli, J. Biol. Chem, vol.280, pp.17339-17345, 2005. ,
HAMAP in 2015: updates to the protein family classification and annotation system, Nucleic Acids Res, vol.43, 2015. ,
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins, Nucleic Acids Res, vol.43, 2015. ,
, , 2012.
, ATP-independent control of autotransporter virulence protein transport via the folding properties of the secreted protein, Chem. Biol, vol.19, pp.287-296
Deciphering key features in protein structures with the new ENDscript server, Nucleic Acids Res, vol.42, pp.320-324, 2014. ,
SMART, a simple modular architecture research tool: identification of signaling domains, Proc. Natl. Acad. Sci. U.S.A, vol.95, pp.5857-5864, 1998. ,
Discovery of an archetypal protein transport system in bacterial outer membranes, Nat. Struct. Mol. Biol, vol.19, pp.506-510, 2012. ,
ProDom: automated clustering of homologous domains, Brief. Bioinform, vol.3, pp.246-251, 2002. ,
URL : https://hal.archives-ouvertes.fr/hal-00427238
New and continuing developments at PROSITE, Nucleic Acids Res, vol.41, pp.344-347, 2013. ,
CATH: comprehensive structural and functional annotations for genome sequences, Nucleic Acids Res, vol.43, pp.376-381, 2015. ,
Efficient secretion of a folded protein domain by a monomeric bacterial autotransporter, Mol. Microbiol, vol.58, pp.945-958, 2005. ,
A conserved aromatic residue in the autochaperone domain of the autotransporter Hbp is critical for initiation of outer membrane translocation, J. Biol. Chem, vol.285, pp.38224-38233, 2010. ,
A phylum level perspective on bacterial cell envelope architecture, Trends Microbiol, vol.18, 2010. ,
Crystal structure of a full-length autotransporter, J. Mol. Biol, vol.396, pp.627-633, 2010. ,
Type V secretion: from biogenesis to biotechnology, Biochim. Biophys. Acta, vol.1843, pp.1592-1611, 2014. ,
Hydrophobic residues of the autotransporter EspP linker domain are important for outer membrane translocation of its passenger, J. Biol. Chem, vol.279, pp.31495-31504, 2004. ,
Autotransporter adhesins in Escherichia coli pathogenesis, Proteomics, 2017. ,
Autotransporter proteins: novel targets at the bacterial cell surface, FEMS Microbiol. Lett, vol.274, pp.163-172, 2007. ,
SUPERFAMILY-sophisticated comparative genomics, data mining, visualization and phylogeny, Nucleic Acids Res, vol.37, pp.380-386, 2009. ,
PIRSF: family classification system at the Protein Information Resource, Nucleic Acids Res, vol.32, pp.112-114, 2004. ,