B. Abbreviations, Binary Alignment Map; BED: Browser Extensible Data; BS-Seq: Bisulfite Sequencing; CDS: CoDing Sequences; ChIP-Seq: Chromatin ImmunoPrecipitation Sequencing; CLIP-Seq: Cross-Linking ImmunopPrecipitation Sequencing

, IGgene: ImmunoGlobulins-gene; miRNA: microRNA; MNase: Micrococcal Nuclease; mRNA: messenger RNA; mtRNA: mitochondrial RNA; ncRNA: noncoding RNA; NGS: Next-Generation Sequencing; NPP-13: Nuclear Pore Protein 13; NUT: Nrd1-Unterminated Transcripts; PyPI: Python Package Index; RiboSeq: Ribosome profiling; RNase: RiboNuclease; RNA-Seq: RNA Sequencing; rRNA: ribosomal RNA; snoRNA: Small Nucleolar RNA, CUT: Cryptic Unstable Transcripts; GTF: General Transfer Format

, XUT: Xrn1-sensitive Unstable Transcripts References

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