M. L. Arnold, Natural hybridization and evolution, 1997.

M. L. Arnold, M. R. Bulger, J. M. Burke, A. L. Hempel, and J. H. Williams, Natural hybridization: How low can you go and still be important?, Ecology, vol.80, pp.371-381, 1999.

G. Bänfer, U. T. Moog, B. Fiala, M. Mohamed, K. Weising et al., A chloroplast genealogy of myrmecophytic Macaranga species (Euphorbiaceae) in Southeast Asia reveals hybridization, vicariance and long-distance dispersals, Molecular Ecology, vol.15, pp.4409-4424, 2006.

N. H. Barton, The role of hybridization in evolution, Molecular Ecology, vol.10, pp.551-568, 2001.

N. H. Barton and G. M. Hewitt, Analysis of hybrid zones, Annual Review of Ecology and Systematics, vol.16, pp.113-148, 1985.

D. I. Bolnick, P. Amarasekare, M. S. Araújo, R. Bürger, J. M. Levine et al., Why intraspecific trait variation matters in community ecology, Trends in Ecology and Evolution, vol.26, pp.183-192, 2011.

C. H. Cannon and M. Lerdau, Variable mating behaviors and tropical biodiversity, Frontiers in Genetics, vol.6, p.183, 2015.

J. Cavender-bares, K. H. Kozak, P. V. Fine, and S. W. Kembel, The merging of community ecology and phylogenetic biology, Ecology Letters, vol.12, pp.693-715, 2009.

I. Cerón-souza, E. Rivera-ocasio, E. Medina, J. A. Jiménez, W. O. Mcmillan et al., Hybridization and introgression in New World red mangroves, Rhizophora (Rhizophoraceae), American Journal of Botany, vol.97, pp.945-957, 2010.

M. A. Chapman and R. J. Abbott, Introgression of fitness genes across a ploidy barrier, New Phytologist, vol.186, pp.63-71, 2010.

N. Colpaert, S. Cavers, E. Bandou, H. Caron, G. Gheysen et al., Sampling tissue for DNA analysis of trees: Trunk cambium as an alternative to canopy leaves, Silvae Genetica, vol.54, pp.265-269, 2005.

R. Condit, P. Ashton, H. Balslev, N. Brokaw, S. Bunyavejchewin et al., Tropical tree ?-diversity: Results from a worldwide network of large plots, Biologiske Skrifter, vol.55, pp.565-582, 2005.

G. M. Crutsinger, M. D. Collins, J. A. Fordyce, Z. Gompert, C. C. Nice et al., Plant genotypic diversity predicts community structure and governs an ecosystem process, Science, vol.313, pp.966-968, 2006.

M. Currat, M. Ruedi, R. J. Petit, and L. Excoffier, The hidden side of invasions: Massive introgression by local genes, Evolution, vol.62, 1908.

K. G. Dexter, T. D. Pennington, and C. W. Cunningham, Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter?, Ecological Monographs, vol.80, pp.267-286, 2010.

C. W. Dick and W. J. Kress, Dissecting tropical plant diversity with forest plots and a molecular toolkit, Bioscience, vol.59, pp.745-755, 2009.

T. E. Dowling and C. L. Secor, The role of hybridization and introgression in the diversification of animals, Annual Review of Ecology and Systematics, vol.28, pp.593-619, 1997.

F. K. Du, R. J. Petit, and J. Q. Liu, More introgression with less gene flow: Chloroplast vs. mitochondrial DNA in the Picea asperata complex in China, and comparison with other conifers, Molecular Ecology, vol.18, pp.1396-1407, 2009.

J. Duminil, H. Caron, I. Scotti, S. O. Cazal, and R. J. Petit, Blind population genetics survey of tropical rainforest trees, Molecular Ecology, vol.15, pp.3505-3513, 2006.
URL : https://hal.archives-ouvertes.fr/hal-01031226

J. Duminil, S. Fineschi, A. Hampe, P. Jordano, D. Salvini et al., Can population genetic structure be predicted from life-history traits?, The American Naturalist, vol.169, pp.662-672, 2007.

N. C. Ellstrand, R. Whitkus, and L. H. Rieseberg, Distribution of spontaneous plant hybrids, Proceedings of the National Academy of Sciences of the United States of America, vol.93, pp.5090-5093, 1996.

A. J. Fazekas, P. R. Kesanakurti, K. S. Burgess, D. M. Percy, S. W. Graham et al., Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?, Molecular Ecology Resources, vol.9, pp.130-139, 2009.

D. L. Field, D. J. Ayre, R. J. Whelan, and A. G. Young, Relative frequency of sympatric species influences rates of interspecific hybridization, seed production and seedling performance in the uncommon Eucalyptus aggregata, Journal of Ecology, vol.96, pp.1198-1210, 2008.

W. O. Focke, Die Pflanzen-Mischlinge: Ein Beitrag zur Biologie der Gewächse, 1881.

M. A. Gonzalez, C. Baraloto, J. Engel, S. A. Mori, P. Pétronelli et al., Identification of Amazonian trees with DNA barcodes, Plos One, vol.4, p.7483, 2009.
URL : https://hal.archives-ouvertes.fr/hal-01086775

M. A. Gonzalez, A. Roger, E. A. Courtois, F. Jabot, N. Norden et al., Shifts in species and phylogenetic diversity between sapling and tree communities indicate negative density dependence in a lowland rain forest, Journal of Ecology, vol.98, pp.137-146, 2010.
URL : https://hal.archives-ouvertes.fr/hal-01095399

D. R. Govindaraju, B. P. Dancik, and D. B. Wagner, Novel chloroplast DNA polymorphism in a sympatric region of two pines, Journal of Evolutionary Biology, vol.2, pp.49-59, 1989.

V. Grant, Plant speciation, 1981.

T. A. Hall, BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symposium Series, vol.41, pp.95-98, 1999.

S. A. Harris and R. Ingram, Chloroplast DNA and biosystematics: The effects of intraspecific diversity and plastid transmission, Taxon, vol.40, pp.393-412, 1991.

H. F. Howe and J. Smallwood, Ecology of seed dispersal, Annual Review of Ecology and Systematics, vol.13, pp.201-228, 1982.

C. L. Hubbs, Hybridization between fish species in nature, Systematic Zoology, vol.4, pp.1-20, 1955.

H. D. Jackson, D. A. Steane, B. M. Potts, and R. E. Vaillancourt, , 1999.

, Chloroplast DNA evidence for reticulate evolution in Eucalyptus (Myrtaceae), Molecular Ecology, vol.8, pp.739-751

S. Joly, P. A. Mclenachan, and P. J. Lockhart, A statistical approach for distinguishing hybridization and incomplete lineage sorting, The American Naturalist, vol.174, pp.54-70, 2009.

K. Kamiya, K. Harada, H. Tachida, and P. S. Ashton, Phylogeny of PgiC gene in Shorea and its closely related genera (Dipterocarpaceae), the dominant trees in Southeast Asian tropical rain forests, American Journal of Botany, vol.92, pp.775-788, 2005.

M. Kim, M. L. Cui, P. Cubas, A. Gillies, K. Lee et al., Regulatory genes control a key morphological and ecological trait transferred between species, Science, vol.322, pp.1116-1119, 2008.

S. Kim and L. H. Rieseberg, Genetic architecture of species differences in annual sunflowers: Implications for adaptive trait introgression, Genetics, vol.153, pp.965-977, 1999.

W. J. Kress, D. L. Erickson, F. A. Jones, N. G. Swenson, R. Perez et al., Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama, Proceedings of the National Academy of Sciences of the United States of America, vol.106, pp.18621-18626, 2009.

W. J. Kress, D. L. Erickson, N. G. Swenson, J. Thompson, M. Uriarte et al., Advances in the use of DNA barcodes to build a community phylogeny for tropical trees in a Puerto Rican forest dynamics plot, Plos One, vol.5, 2010.

T. Larsson, Biodiversity evaluation tools for European forests, Ecological Bulletins, vol.50, pp.1-236, 2001.

R. C. Lewontin and L. C. Birch, Hybridization as a source of variation for adaptation to new environments, Evolution, vol.20, pp.315-336, 1966.

C. Madelaine, R. Pélissier, G. Vincent, J. F. Molino, D. Sabatier et al., Mortality and recruitment in a lowland tropical rain forest of French Guiana: Effects of soil type and species guild, Journal of Tropical Ecology, vol.23, pp.277-287, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00153563

J. Mallet, Hybridization as an invasion of the genome, Trends in Ecology & Evolution, vol.20, pp.229-237, 2005.

J. Mallet, N. Besansky, and M. W. Hahn, How reticulated are species?, Bioessays, vol.38, pp.140-149, 2015.

G. D. Martinsen, T. G. Whitham, R. J. Turek, and P. Keim, Hybrid populations selectively filter gene introgression between species, Evolution, vol.55, pp.1325-1335, 2001.

L. C. Natalis and R. A. Wesselingh, Parental frequencies and spatial configuration shape blumbelbee behavior and floral isolation in hybridizing Rhinanthus, Evolution, vol.67, pp.1692-1705, 2013.

M. Nei, Estimation of average heterozygosity and genetic distance from a small number of individuals, Genetics, vol.89, pp.583-590, 1978.

J. E. Neigel and J. C. Avise, Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation, 1986.

, Evolutionary processes and theory, pp.515-534

A. E. Palme, Q. Su, S. Palsson, and M. Lascoux, Extensive sharing of chloroplast haplotypes among European birches indicates hybridization among Betula pendula, B. pubescens and B. nana, Molecular Ecology, vol.13, pp.167-178, 2004.

S. Pavoine and J. Izsák, New biodiversity measure that includes consistent interspecific and intraspecific components, Methods in Ecology and Evolution, vol.5, pp.165-172, 2014.

N. Pei, J. Lian, D. L. Erickson, N. G. Swenson, W. J. Kress et al., Exploring tree-habitat associations in a Chinese subtropical forest plot using a molecular phylogeny generated from DNA barcode loci, Plos One, vol.6, p.21273, 2011.

R. J. Petit, I. Aguinagalde, J. De-beaulieu, C. Bittkau, S. Brewer et al., Glacial refugia: Hotspots but not melting pots of genetic diversity, Science, vol.300, pp.1563-1565, 2003.

R. J. Petit and L. Excoffier, Gene flow and species delimitation, Trends in Ecology & Evolution, vol.24, pp.386-393, 2009.
DOI : 10.1016/j.tree.2009.02.011

R. J. Petit and A. Hampe, Some evolutionary consequences of being a tree, Annual Review of Ecology Evolution and Systematics, vol.37, pp.187-214, 2006.

R. J. Petit and G. G. Vendramin, Plant phylogeography based on organelle genes: An introduction, Phylogeography of southern European refugia, pp.23-97, 2007.

L. Pijl-van-der, Principles of dispersal in higher plants, 1972.

L. H. Rieseberg, The role of hybridization in evolution: Old wine in new skins, American Journal of Botany, vol.82, pp.944-953, 1995.

L. H. Rieseberg and J. F. Wendel, Introgression and its consequences in plants, Hybrid zones and the evolutionary process, pp.70-109, 1993.

D. Sabatier, M. Grimaldi, M. Prévost, J. Guillaume, M. Godron et al., The influence of soil cover organization on the floristic and structural heterogeneity of a Guianan rain forest, Plant Ecology, vol.131, pp.81-108, 1997.

T. Sang, D. Crawford, and T. Stuessy, Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia, 1997.

, American Journal of Botany, vol.84, pp.1120-1120

C. Scotti-saintagne, C. W. Dick, H. Caron, G. G. Vendramin, E. Guichoux et al., Phylogeography of a species complex of lowland Neotropical rain forest trees (Carapa, Meliaceae), Journal of Biogeography, vol.40, pp.676-692, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01032395

O. Seehausen, Hybridization and adaptive radiation, Trends in Ecology & Evolution, vol.19, pp.198-207, 2004.
DOI : 10.1016/j.tree.2004.01.003

T. G. Seidler and J. B. Plotkin, Seed dispersal and spatial pattern in tropical trees, PLoS Biol, vol.4, p.344, 2006.

J. Shaw, E. B. Lickey, J. T. Beck, S. B. Farmer, W. Liu et al., The tortoise and the hare II: Relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis, American Journal of Botany, vol.92, pp.142-166, 2005.

M. Slatkin and B. Rannala, Estimating allele age, Annual Review of Genomics and Human Genetics, vol.1, pp.225-249, 2000.

J. E. Stajich, D. Block, K. Boulez, S. E. Brenner, S. A. Chervitz et al., The Bioperl toolkit: Perl modules for the life sciences, Genome Research, vol.12, pp.1611-1618, 2002.

G. L. Stebbins, The role of hybridization in evolution, Proceedings of the American Philosophical Society, vol.103, pp.231-251, 1959.

P. Taberlet, N. E. Zimmermann, T. Englisch, A. Tribsch, R. Holderegger et al., Genetic diversity in widespread species is not congruent with species richness in alpine plant communities, Ecology Letters, vol.15, pp.1439-1448, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00991324

J. A. Tate and B. B. Simpson, Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species, Systematic Botany, vol.28, pp.723-737, 2003.

L. Valencia-cuevas, P. Mussali-galante, D. Piñero, E. Castillo-mendoza, G. Rangel-altamirano et al., Hybridization of Quercus castanea (Fagaceae) across a red oak species gradient in Mexico, Plant Systematics and Evolution, vol.301, pp.1085-1097, 2015.

L. Valencia-cuevas, D. Piñero, P. Mussali-galante, S. Valencia-Ávalos, and E. Tovar-sánchez, Effect of a red oak species gradient on genetic structure and diversity of Quercus castanea (Fagaceae) in Mexico, Tree Genetics and Genomes, vol.10, pp.641-652, 2014.

J. C. Vamosi and J. R. Wilson, Nonrandom extinction leads to elevated loss of angiosperm evolutionary history, Ecology Letters, vol.11, pp.1047-1053, 2008.

M. Vellend, Species diversity and genetic diversity: Parallel processes and correlated patterns, The American Naturalist, vol.166, pp.199-215, 2005.

M. Vellend and M. A. Geber, Connections between species diversity and genetic diversity, Ecology Letters, vol.8, pp.767-781, 2005.

K. D. Whitney, J. R. Ahern, L. G. Campbell, L. P. Albert, and M. S. King, Patterns of hybridization in plants, Perspectives in Plant Ecology, vol.12, pp.175-182, 2010.

K. D. Whitney, R. A. Randell, and L. H. Rieseberg, Adaptive introgression of abiotic tolerance traits in the sunflower Helianthus annuus, New Phytologist, vol.187, pp.230-239, 2010.

R. H. Whittaker and H. Klomp, Unifying Concepts in Ecology: Report of the plenary sessions of the First international congress of ecology, pp.169-183, 1974.

B. A. Wilcox, H. Caron, J. Molino, and D. Sabatier, In situ conservation of genetic resources: Determinants of minimum area requirements. National parks, conservation and development: The role of protected areas in sustaining society, pp.639-647, 1984.

, Chloroplast DNA variation in a hyperdiverse tropical tree community, Ecol Evol, vol.9, pp.4897-4905, 2019.