S. T. Chisholm, G. Coaker, B. Day, and B. J. Staskawicz, Host-microbe interactions: Shaping the evolution of the plant immune response, Cell, vol.124, pp.803-814, 2006.

J. D. Jones and J. L. Dangl, The plant immune system, Nature, vol.444, pp.323-329, 2006.

L. Gomez-gomez and T. Boller, Flagellin perception: A paradigm for innate immunity, Trends Plant Sci, vol.7, pp.251-256, 2002.

C. Zipfel, S. Robatzek, L. Navarro, E. J. Oakeley, J. D. Jones et al., Bacterial disease resistance in Arabidopsis through flagellin perception, Nature, vol.428, pp.764-767, 2004.

R. M. Macnab, How bacteria assemble flagella, Annu. Rev. Microbiol, vol.57, pp.77-100, 2003.

G. Felix, J. D. Duran, S. Volko, and T. Boller, Plants have a sensitive perception system for the most conserved domain of bacterial flagellin, Plant J, vol.18, pp.265-276, 1999.

M. E. Maffei, A. Mithöfer, and W. Boland, Before gene expression: Early events in plant-insect interaction, Trends Plant Sci, vol.12, pp.310-316, 2007.

T. Asai, G. Tena, J. Plotnikova, M. R. Willmann, W. L. Chiu et al., MAP kinase signalling cascade in Arabidopsis innate immunity, Nature, vol.415, pp.977-983, 2002.

T. Boller and G. Felix, A renaissance of elicitors: Perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors, Annu. Rev. Plant Biol, vol.60, pp.379-406, 2009.

T. Romeis, A. A. Ludwig, R. Martin, and J. D. Jones, Calcium-dependent protein kinases play an essential role in a plant defence response, EMBO J, vol.20, pp.5556-5567, 2001.

J. P. Metraux, H. Signer, J. Ryals, E. Ward, M. Wyssbenz et al., Increase in salicylic acid at the onset of systemic acquired resistance in cucumber, Science, vol.250, pp.1004-1006, 1990.

E. R. Ward, S. J. Uknes, S. C. Williams, S. S. Dincher, D. L. Wiederhold et al., Coordinate Gene Activity in Response to Agents That Induce Systemic Acquired Resistance, Plant Cell, vol.3, pp.1085-1094, 1991.

R. F. White, Acetylsalicylic-acid (aspirin) induces resistance to tobacco mosaic-virus in tobacco, Virology, vol.99, pp.410-412, 1979.

J. Shah and J. Zeier, Long-distance communication and signal amplification in systemic acquired resistance. Front. Plant Sci. 2013, 4, 30

G. J. Beckers and U. Conrath, Priming for stress resistance: From the lab to the field, Curr. Opin. Plant Biol, vol.10, pp.425-431, 2007.

U. Conrath, G. J. Beckers, V. Flors, P. Garcia-agustin, G. Jakab et al., Priming: Getting ready for battle, Mol. Plant-Microbe Interact, vol.19, pp.1062-1071, 2006.

Y. Bektas and T. Eulgem, Synthetic plant defense elicitors. Front, Plant Sci, vol.5, 2014.

D. L. Cole, The efficacy of acibenzolar-S-methyl, an inducer of systemic acquired resistance, against bacterial and fungal diseases of tobacco, Crop Prot, vol.18, pp.267-273, 1999.

L. Friedrich, K. Lawton, W. Ruess, P. Masner, N. Specker et al., A benzothiadiazole derivative induces systemic acquired resistance in tobacco, Plant J, vol.10, pp.61-70, 2003.

S. Jiang, P. Park, and H. Ishii, Ultrastructural Study on Acibenzolar-S-Methyl-Induced Scab Resistance in Epidermal Pectin Layers of Japanese Pear Leaves, Phytopathology, vol.98, pp.585-591, 2008.

E. Pajot and D. Silué, Evidence that DL-3-aminobutyric acid and acibenzolar-S-methyl induce resistance against bacterial head rot disease of broccoli, Pest Manag. Sci, vol.61, pp.1110-1114, 2005.

L. Scarponi, R. Buonaurio, and L. Martinetti, Persistence and translocation of a benzothiadiazole derivative in tomato plants in relation to systemic acquired resistance against Pseudomonas syringae pv tomato, Pest Manag. Sci, vol.57, pp.262-268, 2001.

A. H. Zavareh, A. S. Tehrani, and M. Mohammadi, Effects of Acibenzolar-S-methyl on the specific activities of peroxidase, chitinase and phenylalanine ammonia-lyase and phenolic content of host leaves in cucumber-powdery mildew interaction, Commun. Agric. Appl. Biol. Sci, vol.69, pp.555-563, 2004.

M. Brisset, S. Cesbron, S. V. Thomson, and J. Paulin, Acibenzolar-S-methyl Induces the Accumulation of Defense-related Enzymes in Apple and Protects from Fire Blight, Eur. J. Plant Pathol, vol.106, pp.529-536, 2000.

B. Marolleau, M. Gaucher, C. Heintz, A. Degrave, R. Warneys et al., When a Plant Resistance Inducer Leaves the Lab for the Field: Integrating ASM into Routine Apple Protection Practices. Front. Plant Sci, vol.8, 1938.
URL : https://hal.archives-ouvertes.fr/hal-01892264

K. Maxson-stein, S. He, R. Hammerschmidt, and A. L. Jones, Effect of Treating Apple Trees with Acibenzolar-S-Methyl on Fire Blight and Expression of Pathogenesis-Related Protein Genes, Plant Dis, vol.86, pp.785-790, 2002.

M. Jaskiewicz, U. Conrath, and C. Peterhansel, Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response, EMBO Rep, vol.12, pp.50-55, 2011.

R. H. Dowen, M. Pelizzola, R. J. Schmitz, R. Lister, J. M. Dowen et al., Widespread dynamic DNA methylation in response to biotic stress, Proc. Natl. Acad. Sci, vol.109, pp.2183-2191, 2012.

L. Sánchez, A. Stassen, J. H. Furci, L. Smith, L. M. Ton et al., The role of DNA (de)methylation in immune responsiveness of Arabidopsis, Plant J, vol.88, pp.361-374, 2016.

A. J. Herr, M. B. Jensen, T. Dalmay, and D. C. Baulcombe, RNA polymerase IV directs silencing of endogenous DNA, Science, vol.308, pp.118-120, 2005.

X. J. Wang, T. Gaasterland, and N. H. Chua, Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana, Genome Biol, vol.6, 2005.

N. Terryn and P. Rouzé, The sense of naturally transcribed antisense RNAs in plants, Trends Plant Sci, vol.5, pp.394-396, 2000.

E. G. Wagner and R. W. Simons, Antisense RNA control in bacteria, phages, and plasmids, Annu. Rev. Microbiol, vol.48, pp.713-742, 1994.

C. Vanhée-brossollet and C. Vaquero, Do natural antisense transcripts make sense in eukaryotes? Gene, vol.211, pp.1-9, 1998.

G. P. Bolwell, L. V. Bindschedler, K. A. Blee, V. S. Butt, D. R. Davies et al., The apoplastic oxidative burst in response to biotic stress in plants: A three-component system, J. Exp. Bot, vol.53, pp.1367-1376, 2002.

A. Kohler, S. Schwindling, and U. Conrath, Benzothiadiazole-induced priming for potentiated responses to pathogen infection, wounding, and infiltration of water into leaves requires the NPR1/NIM1 gene in Arabidopsis, Plant Physiol, vol.128, pp.1046-1056, 2002.

C. Tateda, Z. Zhang, J. Shrestha, J. Jelenska, D. Chinchilla et al., Salicylic Acid Regulates Arabidopsis Microbial Pattern Receptor Kinase Levels and Signaling, Plant Cell, vol.26, pp.4171-4187, 2014.

E. Krol, T. Mentzel, D. Chinchilla, T. Boller, G. Felix et al., Perception of the Arabidopsis danger signal peptide 1 involves the pattern recognition receptor AtPEPR1 and its close homologue AtPEPR2, J. Biol. Chem, vol.285, pp.13471-13479, 2010.

V. A. Katz, O. U. Thulke, and U. Conrath, A benzothiadiazole primes parsley cells for augmented elicitation of defense responses, Plant Physiol, vol.117, pp.1333-1339, 1998.

N. Daccord, J. M. Celton, G. Linsmith, C. Becker, N. Choisne et al., High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development, Nat. Genet, vol.49, pp.1099-1106, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01602554

J. M. Celton, S. Gaillard, M. Bruneau, S. Pelletier, S. Aubourg et al., Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control, New Phytol, vol.203, pp.287-299, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01209978

E. A. Doyle, A. M. Lane, J. M. Sides, M. B. Mudgett, and J. D. Monroe, An alpha-amylase (At4g25000) in Arabidopsis leaves is secreted and induced by biotic and abiotic stress, Plant Cell Environ, vol.30, pp.388-398, 2007.

D. Stanley, A. M. Fitzgerald, K. J. Farnden, and E. A. Macrae, Characterisation of putative ?-amylases from apple (Malus domestica) and Arabidopsis thaliana, Biologia, vol.57, pp.137-148, 2002.

S. J. Cokus, S. Feng, X. Zhang, Z. Chen, B. Merriman et al., Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning, Nature, vol.452, pp.215-219, 2008.

U. Conrath, G. J. Beckers, C. J. Langenbach, and M. R. Jaskiewicz, Priming for enhanced defense, Annu. Rev. Phytopathol, vol.53, pp.97-119, 2015.

D. Walters and M. Heil, Costs and trade-offs associated with induced resistance, Physiol. Mol. Plant Pathol, vol.71, pp.3-17, 2007.

S. Y. Yi, K. Shirasu, J. S. Moon, S. G. Lee, and S. Y. Kwon, The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition, PLoS ONE, vol.9, 2014.

U. Conrath, Molecular aspects of defence priming, Trends Plant Sci, vol.16, pp.524-531, 2011.

N. Liu, Y. Ding, M. Fromm, and Z. Avramova, Different gene-specific mechanisms determine the 'revised-response' memory transcription patterns of a subset of A. thaliana dehydration stress responding genes, Nucleic Acids Res, vol.42, pp.5556-5566, 2014.

N. Liu, P. E. Staswick, and Z. Avramova, Memory responses of jasmonic acid-associated Arabidopsis genes to a repeated dehydration stress, Plant Cell Environ, vol.39, pp.2515-2529, 2016.

T. J. Bruce, M. C. Matthes, J. A. Napier, and J. A. Pickett, Stressful "memories" of plants: Evidence and possible mechanisms, Plant Sci, vol.173, pp.603-608, 2007.

A. Domínguez-ferreras, M. Kiss-papp, A. K. Jehle, G. Felix, and D. Chinchilla, An Overdose of the Arabidopsis Coreceptor BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1 or Its Ectodomain Causes Autoimmunity in a SUPPRESSOR OF BIR1-1-Dependent Manner, Plant Physiol, vol.168, pp.1106-1121, 2015.

S. Trouvelot, M. C. Héloir, B. Poinssot, A. Gauthier, F. Paris et al., Carbohydrates in plant immunity and plant protection: Roles and potential application as foliar sprays. Front, Plant Sci, vol.5, 2014.

O. Borsani, J. Zhu, P. E. Verslues, R. Sunkar, and J. K. Zhu, Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis, Cell, vol.123, pp.1279-1291, 2005.

V. Chinnusamy, J. Zhu, and J. K. Zhu, Cold stress regulation of gene expression in plants, Trends Plant Sci, vol.12, pp.444-451, 2007.

H. Jin, V. Vacic, T. Girke, S. Lonardi, and J. K. Zhu, Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis, BMC Mol. Biol, vol.9, issue.6, 2008.

B. Khraiwesh, J. K. Zhu, and J. Zhu, Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants, Biochim. Biophys. Acta, vol.1819, pp.137-148, 2012.

R. Sunkar, MicroRNAs with macro-effects on plant stress responses, Semin. Cell Dev. Biol, vol.21, pp.805-811, 2010.

H. Saze, O. Mittelsten-scheid, and J. Paszkowski, Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis, Nat. Genet, vol.34, pp.65-69, 2003.

Y. Lespinasse, L. Bouvier, M. Djulbic, and E. Chevreau, Haploidy in apple and pear. Acta Hortic, 1998.

S. Depuydt, S. Trenkamp, A. R. Fernie, S. Elftieh, J. P. Renou et al., An integrated genomics approach to define niche establishment by Rhodococcus fascians, Plant Physiol, vol.149, pp.1366-1386, 2009.

G. K. Smyth, J. Michaud, and H. S. Scott, Use of within-array replicate spots for assessing differential expression in microarray experiments, Bioinformatics, vol.21, pp.2067-2075, 2005.

P. Y. Muller, H. Janovjak, A. R. Miserez, and Z. Dobbie, Processing of gene expression data generated by quantitative real-time RT-PCR, Biotechniques, vol.32, pp.1372-1374, 2002.

H. Mi, X. Huang, A. Muruganujan, H. Tang, C. Mills et al., PANTHER version 11: Expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements, Nucleic Acids Res, vol.45, pp.183-189, 2017.