. Iwgsc-website, Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, in press, 2018.

M. D. Wilkinson, M. Dumontier, I. Aalbersberg, G. Appleton, M. Axton et al., The FAIR guiding principles for scientific data management and stewardship, Sci Data, vol.3, p.160018, 2016.

D. Steinbach, M. Alaux, J. Amselem, N. Choisne, S. Durand et al., GnpIS: an information system to integrate genetic and genomic data from plants and fungi, Database J Biol Databases Curation, p.58, 2013.

W. M. Nelson, A. K. Bharti, E. Butler, F. Wei, G. Fuks et al., Whole-genome validation of high-information-content fingerprinting, Plant Physiol, vol.139, pp.27-38, 2005.

R. Philippe, F. Choulet, E. Paux, J. Van-oeveren, J. Tang et al., Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome, BMC Genomics, vol.13, p.47, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01190822

C. Soderlund, S. Humphray, A. Dunham, and L. French, Contigs built with fingerprints, markers, and FPC V4.7, Genome Res, vol.10, pp.1772-87, 2000.

Z. Frenkel, E. Paux, D. Mester, C. Feuillet, and A. Korol, LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes, BMC Bioinformatics, vol.11, p.584, 2010.
URL : https://hal.archives-ouvertes.fr/hal-01189774

, French plant genomic resource centre, 2018.

S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, Basic local alignment search tool, J Mol Biol, vol.215, pp.403-413, 1990.

, International Wheat Genome Sequencing Consortium (IWGSC). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome, Science, vol.345, p.1251788, 2014.

F. Choulet, A. Alberti, S. Theil, N. Glover, V. Barbe et al., Structural and functional partitioning of bread wheat chromosome 3B, Science, vol.345, p.1249721, 2014.
URL : https://hal.archives-ouvertes.fr/hal-02638189

M. Mascher, G. J. Muehlbauer, D. S. Rokhsar, J. Chapman, J. Schmutz et al., Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ), Plant J Cell Mol Biol, vol.76, pp.718-745, 2013.

R. H. Ramírez-gonzález, P. Borrill, D. Lang, S. A. Harrington, J. Brinton et al., The transcriptional landscape of polyploid wheat, Science, 2018.

K. W. Jordan, S. Wang, Y. Lun, L. Gardiner, R. Maclachlan et al., A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes, Genome Biol, vol.16, p.48, 2015.

H. Rimbert, B. Darrier, J. Navarro, J. Kitt, F. Choulet et al., High throughput SNP discovery and genotyping in hexaploid wheat, PLoS One, vol.13, p.186329, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02628543

B. J. Clavijo, L. Venturini, C. Schudoma, G. G. Accinelli, G. Kaithakottil et al., An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations, Genome Res, vol.27, pp.885-96, 2017.

M. Luo, Y. Q. Gu, F. M. You, K. R. Deal, Y. Ma et al., A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor, Proc Natl Acad Sci U S A, vol.110, pp.7940-7945, 2013.

. Gnpis-wheat-data, , 2018.

D. Samson, F. Legeai, E. Karsenty, S. Reboux, J. Veyrieras et al., GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics, Nucleic Acids Res, vol.31, pp.179-82, 2003.

H. ?wiek-kupczy?ska, T. Altmann, D. Arend, E. Arnaud, D. Chen et al., Measures for interoperability of phenotypic data: minimum information requirements and formatting, Plant Methods, vol.12, p.44, 2016.

, French small grain cereals genebank, 2018.

A. Kalderimis, R. Lyne, D. Butano, S. Contrino, M. Lyne et al., InterMine: extensive web services for modern biology, Nucleic Acids Res, vol.42, pp.468-72, 2014.

, IWGSC data repository, 2018.

L. D. Stein, C. Mungall, S. Shu, M. Caudy, M. Mangone et al., The generic genome browser: a building block for a model organism system database

, Genome Res, vol.12, pp.1599-610, 2002.

, GnpIS: Physical map browser, 2018.

M. E. Skinner, A. V. Uzilov, L. D. Stein, C. J. Mungall, and I. H. Holmes, JBrowse: a nextgeneration genome browser, Genome Res, vol.19, pp.1630-1638, 2009.

, GnpIS: IWGSC RefSeq v1.0 browser, 2018.

, GnpIS: IWGSC BLAST tool, 2018.

D. M. Bolser, D. M. Staines, E. Perry, and P. J. Kersey, Ensembl Plants: integrating tools for visualizing, mining, and analyzing plant genomic data, Methods Mol Biol Clifton NJ, vol.1533, pp.1-31, 2017.

G. Plantsyntenyviewer, , 2018.

C. Pont, F. Murat, S. Guizard, R. Flores, S. Foucrier et al., Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo-and neoduplicated subgenomes, Plant J Cell Mol Biol, vol.76, pp.1030-1074, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00964421

. Multi-crop, , 2018.

R. Shrestha, L. Matteis, M. Skofic, A. Portugal, G. Mclaren et al., Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the crop ontology developed by the crop communities of practice, Front Physiol, vol.3, p.326, 2012.

, GnpIS: WheatMine tool, 2018.

, WheaIS, 2018.

M. Spannagl, T. Nussbaumer, K. C. Bader, M. M. Martis, M. Seidel et al., PGSB PlantsDB: updates to the database framework for comparative plant genome research, Nucleic Acids Res, vol.44, pp.1141-1148, 2016.

C. Künne, M. Lange, T. Funke, H. Miehe, T. Thiel et al., CR-EST: a resource for crop ESTs, Nucleic Acids Res, vol.33, pp.619-640, 2005.

M. Oppermann, S. Weise, C. Dittmann, and H. Knüpffer, GBIS: the information system of the German Genebank, Database J Biol Databases Curation, 2015.

F. Schreiber, C. Colmsee, T. Czauderna, E. Grafahrend-belau, A. Hartmann et al., MetaCrop 2.0: managing and exploring information about crop plant metabolism, Nucleic Acids Res, vol.40, pp.1173-1180, 2012.

M. K. Tello-ruiz, J. Stein, S. Wei, J. Preece, A. Olson et al., Gramene 2016: comparative plant genomics and pathway resources, Nucleic Acids Res, vol.44, pp.1133-1173, 2016.

J. D. Montenegro, A. A. Golicz, P. E. Bayer, B. Hurgobin, H. Lee et al., The pangenome of hexaploid bread wheat, Plant J Cell Mol Biol, vol.90, pp.1007-1020, 2017.

V. Carollo, D. E. Matthews, G. R. Lazo, T. K. Blake, D. D. Hummel et al., GrainGenes 2.0. An improved resource for the small-grains community, Plant Physiol, vol.139, pp.643-51, 2005.

D. Yeumo, E. Alaux, M. Arnaud, E. Aubin, S. Baumann et al., Developing data interoperability using standards: a wheat community use case, vol.6, p.1843, 2017.
URL : https://hal.archives-ouvertes.fr/lirmm-01652022

, Wheat Data Interoperability Working Group guidelines, 2018.

, 30215784%20(?%20strand)%20(TraesCS5A01G033100), 2018.

, GWAS link, 2018.