A herpesvirus associated with mass mortality of juvenile and adult koi, a strain of common carp, J. Aquat. Anim. Health, vol.12, pp.44-57, 2000. ,
Current knowledge on koi herpesvirus (khv): A review, Vet. Med, vol.50, pp.139-147, 2005. ,
Identification and characterization of cyprinid herpesvirus-3 (cyhv-3) encoded micrornas, PLoS ONE, vol.10, 2015. ,
The emergence of koi herpesvirus and its significance to european aquaculture, Bull. Eur. Assoc. Fish Pathol, vol.24, pp.293-307, 2004. ,
Phylogenetic relationships in the family alloherpesviridae, Dis. Aquat. Org, vol.84, pp.179-194, 2009. ,
Mass mortalities in koi carp, cyprinus carpio, associated with gill and skin disease, Bull. Eur. Assoc. Fish Pathol, vol.19, pp.182-185, 1999. ,
Results of total DNA measurement in koi tissue by koi herpes virus real-time pcr, J. Virol. Methods, vol.172, pp.81-84, 2011. ,
Investigation of koi herpesvirus latency in koi, J. Virol, vol.85, pp.4954-4962, 2011. ,
Application of a nanoflare probe specific to a latency associated transcript for isolation of khv latently infected cells, Virus Res, vol.208, pp.129-135, 2015. ,
Genome sequences of three koi herpesvirus isolates representing the expanding distribution of an emerging disease threatening koi and common carp worldwide, J. Virol, vol.81, pp.5058-5065, 2007. ,
Genomic and biologic comparisons of cyprinid herpesvirus 3 strains, Vet. Res, vol.49, p.40, 2018. ,
Targeted genomic enrichment and sequencing of cyhv-3 from carp tissues confirms low nucleotide diversity and mixed genotype infections ,
Whole-genome sequence of a novel chinese cyprinid herpesvirus 3 isolate reveals the existence of a distinct european genotype in east asia, Vet. Microbiol, vol.175, pp.185-194, 2015. ,
Comparative genomics of carp herpesviruses, J. Virol, vol.87, pp.2908-2922, 2013. ,
Cloning of the koi herpesvirus genome as an infectious bacterial artificial chromosome demonstrates that disruption of the thymidine kinase locus induces partial attenuation in cyprinus carpio koi, J. Virol, vol.82, pp.4955-4964, 2008. ,
Rational development of an attenuated recombinant cyprinid herpesvirus 3 vaccine using prokaryotic mutagenesis and in vivo bioluminescent imaging, PLoS Pathog, vol.11, 2015. ,
Efficient vaccine against the virus causing a lethal disease in cultured cyprinus carpio, vol.21, pp.4677-4684, 2003. ,
Development of vaccines against vhs and ihn: Oral application, molecular marker and discrimination of vaccinated fish from infected populations, J. Appl. Ichthyol, vol.14, pp.179-183, 1998. ,
Genetic variability of koi herpesvirus in vitro-a natural event? Front ,
Spatio-temporal analysis of cyprinid herpesvirus 3 genetic diversity at a local scale, J. Fish Dis, vol.35, pp.767-774, 2012. ,
Isolation and characterization of koi herpesvirus (khv) from indonesia: Identification of a new genetic lineage, J. Fish Dis, vol.34, pp.87-101, 2011. ,
Isolation of a virus from koi with altered gills, Bull. Eur. Assoc. Fish Pathol, vol.19, pp.221-224, 1999. ,
Investigation on the diagnostic sensitivity of molecular tools used for detection of koi herpesvirus, J. Virol. Methods, vol.163, pp.229-233, 2010. ,
Trimmomatic: A flexible trimmer for illumina sequence data, Bioinformatics, vol.30, pp.2114-2120, 2014. ,
Fast and accurate short read alignment with burrows-wheeler transform, Bioinformatics, vol.25, pp.1754-1760, 2009. ,
Genome Project Data Processing Subgroup. The sequence alignment/map format and samtools, Bioinformatics, vol.25, pp.2078-2079, 2009. ,
Integrative genomics viewer (igv): High-performance genomics data visualization and exploration, Brief. Bioinform, vol.14, pp.178-192, 2013. ,
Cd-search: Protein domain annotations on the fly, Nucleic Acids Res, vol.32, pp.327-331, 2004. ,
Susceptibility of koi×crucian carp and koi×goldfish hybrids to koi herpesvirus (khv) and the development of khv disease (khvd), J. Fish Dis, vol.33, pp.267-272, 2010. ,
A comprehensive benchmarking study of protocols and sequencing platforms for 16s rrna community profiling, BMC Genom, vol.17, 2016. ,
Unique, dual-indexed sequencing adapters with umis effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing, BMC Genom, vol.19, 2018. ,
Quality filtering of illumina index reads mitigates sample cross-talk, BMC Genom, vol.17, 2016. ,
Performance of common analysis methods for detecting low-frequency single nucleotide variants in targeted next-generation sequence data, J. Mol. Diagn, vol.16, pp.75-88, 2014. ,
Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller, vol.18, 2017. ,
Hiv quasispecies and resampling, Science, vol.273, pp.415-416, 1996. ,
Sources of pcr-induced distortions in high-throughput sequencing data sets, Nucleic Acids Res, vol.43, 2015. ,
On the effective depth of viral sequence data ,
Limit of blank, limit of detection and limit of quantitation, Clin. Biochem. Rev, vol.29, pp.49-52, 2008. ,
Ubiquitination: Ring for destruction?, Curr. Biol, vol.10, pp.84-87, 2000. ,
Ring fingers mediate ubiquitin-conjugating enzyme (e2)-dependent ubiquitination, Proc. Natl. Acad. Sci, vol.96, pp.11364-11369, 1999. ,
Ring-domain e3 ligase-mediated host-virus interactions: Orchestrating immune responses by the host and antagonizing immune defense by viruses, Front. Immunol, vol.9, 1083. ,
Development of an attenuated vaccine to combat Koi Herpesvirus Disease, Fish Shellfish Immunol. Submitted ,
Contribution of next-generation sequencing to aquatic and fish virology, Intervirology, vol.59, pp.285-300, 2016. ,
Recent advances in inferring viral diversity from high-throughput sequencing data, Virus Res, vol.239, pp.17-32, 2017. ,
Within-host evolution of human influenza virus, Trends Microbiol, vol.26, pp.781-793, 2018. ,
, This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license, © 2019 by the authors. Licensee MDPI