R. A. Freeze, Role of subsurface flow in generating surface runoff: 1. Base flow contributions to channel flow, Water Resour. Res, vol.8, pp.609-623, 1972.

E. T. Hester and M. N. Gooseff, Moving Beyond the Banks: Hyporheic Restoration Is Fundamental to Restoring Ecological Services and Functions of Streams, Environ. Sci. Technol, vol.44, pp.1521-1525, 2010.

E. T. Hester, K. E. Brooks, and D. T. Scott, Comparing reach scale hyporheic exchange and denitrification induced by instream restoration structures and natural streambed morphology, Ecol. Eng, vol.115, pp.105-121, 2018.

M. D. Alexander and D. Caissie, Variability and comparison of hyporheic water temperatures and seepage fluxes in a small Atlantic salmon stream, vol.41, pp.72-82, 2003.

J. R. Barlow and R. H. Coupe, Groundwater and surface-water exchange and resulting nitrate dynamics in the Bogue Phalia basin in northwestern Mississippi, J. Environ. Qual, vol.41, pp.155-169, 2012.

C. V. Baxter, F. R. Hauer, and . Geomorphology, hyporheic exchange, and selection of spawning habitat by bull trout (Salvelinus confluentus), Can. J. Fish. Aquat. Sci, vol.57, pp.1470-1481, 2000.

R. W. Hillyard and E. R. Keeley, Temperature-Related Changes in Habitat Quality and Use by Bonneville Cutthroat Trout in Regulated and Unregulated River Segments, Trans. Am. Fish. Soc, vol.141, pp.1649-1663, 2012.

P. Vidon, C. Allan, D. Burns, T. P. Duval, N. Gurwick et al., Hot Spots and Hot Moments in Riparian Zones: Potential for Improved Water Quality Management1, J. Am. Water Resour. Assoc, vol.46, pp.278-298, 2010.

J. Harvey and M. Gooseff, River corridor science: Hydrologic exchange and ecological consequences from bedforms to basins, Water Resour. Res, vol.51, pp.6893-6922, 2015.

D. R. Lee and H. Hynes, Identification of groundwater discharge zones in a reach of Hillman Creek in southern Ontario, Water Qual. Res. J, vol.13, pp.121-134, 1978.

E. L. Libelo and W. G. Macintyre, Effects of surface-water movement on seepage-meter measurements of flow through the sediment-water interface, Appl. Hydrogeol, vol.2, pp.49-54, 1994.

J. L. Mccallum, P. G. Cook, D. Berhane, C. Rumpf, and G. A. Mcmahon, Quantifying groundwater flows to streams using differential flow gaugings and water chemistry, J. Hydrol, vol.416, pp.118-132, 2012.

C. Ruehl, A. Fisher, C. Hatch, M. Los-huertos, G. Stemler et al., Differential gauging and tracer tests resolve seepage fluxes in a strongly-losing stream, J. Hydrol, vol.330, pp.235-248, 2006.

S. Frei and B. Gilfedder, FINIFLUX: An implicit finite element model for quantification of groundwater fluxes and hyporheic exchange in streams and rivers using radon, Water Resour. Res, vol.51, pp.6776-6786, 2015.

M. Pittroff, S. Frei, and B. Gilfedder, Quantifying nitrate and oxygen reduction rates in the hyporheic zone using 222Rn to upscale biogeochemical turnover in rivers, Water Resour. Res, vol.53, pp.563-579, 2017.

M. C. Westhoff, H. H. Savenije, W. M. Luxemburg, G. S. Stelling, N. C. Van-de-giesen et al., A distributed stream temperature model using high resolution temperature observations, Hydrol. Earth Syst. Sci, vol.11, pp.1469-1480, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00298810

M. A. Briggs, L. K. Lautz, and J. M. Mckenzie, A comparison of fibre-optic distributed temperature sensing to traditional methods of evaluating groundwater inflow to streams, Hydrol. Process, vol.26, pp.1277-1290, 2012.

R. Gonzalez-pinzon, A. S. Ward, C. E. Hatch, A. N. Wlostowski, K. Singha et al., A field comparison of multiple techniques to quantify groundwatersurface-water interactions, Freshw. Sci, vol.34, pp.139-160, 2015.

E. Kalbus, F. Reinstorf, and M. Schirmer, Measuring methods for groundwater surface water interactions: A review, Hydrol. Earth Syst. Sci, vol.10, pp.873-887, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00305227

J. R. Poulsen, E. Sebok, C. Duque, D. Tetzlaff, and P. K. Engesgaard, Detecting groundwater discharge dynamics from point-to-catchment scale in a lowland stream: Combining hydraulic and tracer methods, Hydrol. Earth Syst. Sci, vol.19, pp.1871-1886, 2015.

M. P. Anderson, Heat as a ground water tracer, vol.43, pp.951-968, 2005.

J. Constantz, Interaction between stream temperature, streamflow, and groundwater exchanges in Alpine streams, Water Resour. Res, vol.34, pp.1609-1615, 1998.

D. A. Tristram, S. Krause, A. Levy, Z. P. Robinson, R. I. Waller et al., Identifying spatial and temporal dynamics of proglacial groundwater-surface-water exchange using combined temperaturetracing methods, Freshw. Sci, vol.34, pp.99-110, 2015.

W. R. Stallman, Steady One-Dimensional Fluid Flow in a Semi-Infinite Porous Medium with Sinusoidal Surface Temperature, J. Geophys. Res, vol.70, pp.2821-2827, 1965.

C. E. Hatch, A. T. Fisher, J. S. Revenaugh, J. Constantz, and C. Ruehl, Quantifying surface water-groundwater interactions using time series analysis of streambed thermal records: Method development, Water Resour. Res, vol.42, p.14, 2006.

M. A. Briggs, L. K. Lautz, J. M. Mckenzie, R. P. Gordon, and D. K. Hare, Using high-resolution distributed temperature sensing to quantify spatial and temporal variability in vertical hyporheic flux, Water Resour. Res, vol.48, pp.1-16, 2012.

M. A. Briggs, L. K. Lautz, S. F. Buckley, and J. W. Lane, Practical limitations on the use of diurnal temperature signals to quantify groundwater upwelling, J. Hydrol, vol.519, pp.1739-1751, 2014.

D. H. Käser, A. Binley, A. L. Heathwaite, and S. Krause, Spatio-temporal variations of hyporheic flow in a rifflestep-pool sequence, Hydrol. Process. Int. J, vol.23, pp.2138-2149, 2009.

S. Krause, T. Blume, and N. Cassidy, Investigating patterns and controls of groundwater up-welling in a lowland river by combining Fibre-optic Distributed Temperature Sensing with observations of vertical hydraulic gradients, Hydrol. Earth Syst. Sci, vol.16, pp.1775-1792, 2012.

E. Hurtig, S. Grosswig, and K. Kuhn, Distributed fibre optic temperature sensing: A new tool for long-term and short-term temperature monitoring in boreholes, Energy Sources, vol.19, pp.55-62, 1997.

M. B. Hausner, F. Suarez, K. E. Glander, N. Van-de-giesen, J. S. Selker et al., Calibrating Single-Ended Fiber-Optic Raman Spectra Distributed Temperature Sensing Data, Sensors, vol.11, pp.10859-10879, 2011.

S. W. Tyler, J. S. Selker, M. B. Hausner, C. E. Hatch, T. Torgersen et al., Environmental temperature sensing using Raman spectra DTS fiber-optic methods, Water Resour. Res, vol.45, p.11, 2009.

N. Van-de-giesen, S. C. Steele-dunne, J. Jansen, O. Hoes, M. B. Hausner et al., Double-Ended Calibration of Fiber-Optic Raman Spectra Distributed Temperature Sensing Data, Sensors, vol.12, pp.5471-5485, 2012.

K. B. Moffett, S. W. Tyler, T. Torgersen, M. Menon, J. S. Selker et al., Processes controlling the thermal regime of saltmarsh channel beds, Environ. Sci. Technol, vol.42, pp.671-676, 2008.

D. O. Rosenberry, M. A. Briggs, G. Delin, and D. K. Hare, Combined use of thermal methods and seepage meters to efficiently locate, quantify, and monitor focused groundwater discharge to a sand-bed stream, Water Resour. Res, vol.52, pp.4486-4503, 2016.

J. S. Selker, L. Thevenaz, H. Huwald, A. Mallet, W. Luxemburg et al., Distributed fiber-optic temperature sensing for hydrologic systems, Water Resour. Res, vol.42, pp.1-8, 2006.

J. S. Selker, N. Van-de-giesen, M. Westhoff, W. Luxemburg, and M. B. Parlange, Fiber optics opens window on stream dynamics, Geophys. Res. Lett, vol.33, pp.1-4, 2006.

M. C. Westhoff, M. N. Gooseff, T. A. Bogaard, and H. H. Savenije, Quantifying hyporheic exchange at high spatial resolution using natural temperature variations along a first-order stream, Water Resour. Res, vol.47, pp.1-13, 2011.

F. Lauer, H. G. Frede, and L. Breuer, Uncertainty assessment of quantifying spatially concentrated groundwater discharge to small streams by distributed temperature sensing, Water Resour. Res, vol.49, pp.400-407, 2013.

L. Lay, H. Thomas, Z. Rouault, F. Pichelin, P. Moatar et al., Characterization of diffuse groundwater inflows into stream water. Part I: Spatial and temporal mapping framework based on fiber optic distributed temperature sensing, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02372086

C. S. Lowry, J. F. Walker, R. J. Hunt, and M. P. Anderson, Identifying spatial variability of groundwater discharge in a wetland stream using a distributed temperature sensor, Water Resour. Res, vol.43, pp.1-9, 2007.

E. A. Mamer and C. S. Lowry, Locating and quantifying spatially distributed groundwater/surface water interactions using temperature signals with paired fiber-optic cables, Water Resour. Res, vol.49, pp.7670-7680, 2013.

E. Sebok, C. Duque, P. Engesgaard, and E. Boegh, Application of Distributed Temperature Sensing for coupled mapping of sedimentation processes and spatio-temporal variability of groundwater discharge in soft-bedded streams, Hydrol. Process, vol.29, pp.3408-3422, 2015.

N. P. Unland, I. Cartwright, M. S. Andersen, G. C. Rau, J. Reed et al., Investigating the spatio-temporal variability in groundwater and surface water interactions: A multitechnique approach, Hydrol. Earth Syst. Sci, vol.17, pp.3437-3453, 2013.

J. Tirado-conde, P. Engesgaard, S. Karan, S. Müller, and C. Duque, Evaluation of Temperature Profiling and Seepage Meter Methods for Quantifying Submarine Groundwater Discharge to Coastal Lagoons: Impacts of Saltwater Intrusion and the Associated Thermal Regime, vol.11, p.1648, 2019.

D. Varli, K. Yilmaz, and . Multi, Scale Approach for Improved Characterization of Surface Water-Groundwater Interactions: Integrating Thermal Remote Sensing and in-Stream Measurements, vol.10, pp.854-875, 2018.

A. K. Carlson, W. W. Taylor, K. M. Schlee, T. G. Zorn, and D. M. Infante, Projected impacts of climate change on stream salmonids with implications for resilience-based management, Ecol. Freshw. Fish, vol.26, pp.190-204, 2017.

D. M. Hendriks, M. J. Kuijper, and R. Van-ek, Groundwater impact on environmental flow needs of streams in sandy catchments in the Netherlands, Hydrol. Sci. J, vol.59, pp.562-577, 2014.

C. L. Laize, C. B. Meredith, M. J. Dunbar, and D. M. Hannah, Climate and basin drivers of seasonal river water temperature dynamics, Hydrol. Earth Syst. Sci, vol.21, pp.3231-3247, 2017.

D. Hongve, A revised procedure for discharge measurement by means of the salt dilution method, Hydrol. Process, vol.1, pp.267-270, 1987.

D. Calkins and T. Dunne, A salt tracing method for measuring channel velocities in small mountain streams, J. Hydrol, vol.11, pp.379-392, 1970.

R. A. Sloto and M. Y. Crouse, HYSEP: A Computer Program for Streamflow Hydrograph Separation and Analysis, Water-Resources Investigations Report

U. S. Survey, , p.46, 1996.

R. A. Freeze, Streamflow generation, Rev. Geophys, vol.12, pp.627-647, 1974.

A. J. Boulton, S. Findlay, P. Marmonier, E. H. Stanley, and H. M. Valett, The functional significance of the hyporheic zone in streams and rivers, Annu. Rev. Ecol. Syst, vol.29, pp.59-81, 1998.

M. B. Cardenas, Hyporheic zone hydrologic science: A historical account of its emergence and a prospectus, Water Resour. Res, vol.51, pp.3601-3616, 2015.

Z. Thomas, P. Rousseau-gueutin, T. Kolbe, B. W. Abbott, J. Marçais et al., Constitution of a catchment virtual observatory for sharing flow and transport models outputs, J. Hydrol, vol.543, pp.59-66, 2016.
URL : https://hal.archives-ouvertes.fr/insu-01312759

R. P. Gordon, L. K. Lautz, M. A. Briggs, and J. M. Mckenzie, Automated calculation of vertical pore-water flux from field temperature time series using the VFLUX method and computer program, J. Hydrol, vol.420, pp.142-158, 2012.

L. Benyahya, D. Caissie, M. G. Satish, and N. El-jabi, Long-wave radiation and heat flux estimates within a small tributary in Catamaran Brook, Canada). Hydrol. Process, vol.26, pp.475-484, 2012.

D. Caissie, The thermal regime of rivers: A review, Freshw. Biol, vol.51, pp.1389-1406, 2006.

A. C. Petrides, J. Huff, A. Arik, N. Van-de-giesen, A. M. Kennedy et al., Shade estimation over streams using distributed temperature sensing, Water Resour. Res, vol.47, pp.1-4, 2011.

D. J. Irvine, R. H. Cranswick, C. T. Simmons, M. A. Shanafield, and L. K. Lautz, The effect of streambed heterogeneity on groundwater-surface water exchange fluxes inferred from temperature time series, Water Resour. Res, vol.51, pp.198-212, 2015.

G. Vandersteen, U. Schneidewind, C. Anibas, C. Schmidt, P. Seuntjens et al., Determining groundwater-surface water exchange from temperature-time series: Combining a local polynomial method with a maximum likelihood estimator, Water Resour. Res, vol.51, pp.922-939, 2015.

I. Abrol and J. Palta, Bulk density determination of soil clods using rubber solution as a coating material, Soil Sci, vol.106, pp.465-468, 1968.

W. W. Lapham, Use of temperature profiles beneath streams to determine rates of vertical ground-water flow and vertical hydraulic conductivity

U. S. Survey, , 1989.

D. A. Stonestrom and J. Constantz, Using Temperature to Study Stream-Ground Water Exchanges

U. S. , Geological Survey Fact Sheet, pp.1-4, 2004.

T. Broecker, K. Teuber, V. Sobhi-gollo, G. Nützmann, J. Lewandowski et al., Integral Flow Modelling Approach for Surface Water-Groundwater Interactions along a Rippled Streambed, vol.11, p.1517, 2019.

M. N. Gooseff, J. K. Anderson, S. M. Wondzell, J. Lanier, and R. Haggerty, A modelling study of hyporheic exchange pattern and the sequence, size, and spacing of stream bedforms in mountain stream networks, Oregon, USA. Hydrol. Process, vol.19, pp.2915-2929, 2005.

C. Yao, C. Lu, W. Qin, and J. Lu, Field Experiments of Hyporheic Flow Affected by a Clay Lens, vol.11, p.1613, 2019.

S. Poblador, Z. Thomas, P. Rousseau-gueutin, S. Sabaté, and F. Sabater, Riparian forest transpiration under the current and projected Mediterranean climate: Effects on soil water and nitrate uptake, Ecohydrology, vol.12, p.2043, 2019.
URL : https://hal.archives-ouvertes.fr/hal-01962149

S. Frei, S. Durejka, H. Le-lay, Z. Thomas, and B. S. Gilfedder, Hyporheic nitrate removal at the reach scale: Exposure times vs. residence times, Water Resour. Res, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02365459

J. H. Duff, B. Toner, A. P. Jackman, R. J. Avanzino, and F. J. Triska, Determination of groundwater discharge into a sand and gravel bottom river: A comparison of chloride dilution and seepage meter techniques, Int. Ver. Theor. Angew. Limnol. Verh, vol.27, pp.406-411, 2000.

M. A. Briggs, E. B. Voytek, F. D. Day-lewis, D. O. Rosenberry, and J. W. Lane, Understanding Water Column and Streambed Thermal Refugia for Endangered Mussels in the Delaware River, Environ. Sci. Technol, vol.47, pp.11423-11431, 2013.

D. K. Hare, M. A. Briggs, D. O. Rosenberry, D. F. Boutt, and J. W. Lane, A comparison of thermal infrared to fiber-optic distributed temperature sensing for evaluation of groundwater discharge to surface water, J. Hydrol, vol.530, pp.153-166, 2015.

C. L. Shope, J. E. Constantz, C. A. Cooper, D. M. Reeves, G. Pohll et al., Influence of a large fluvial island, streambed, and stream bank on surface water-groundwater fluxes and water table dynamics, Water Resour. Res, vol.48, pp.1-18, 2012.

R. T. Van-balen, C. Kasse, and J. De-moor, Impact of groundwater flow on meandering, Earth Surf. Process. Landf, vol.33, 2008.

T. C. Winter, J. W. Harvey, O. L. Franke, and W. M. Alley, Ground Water and Surface Water: A Single Resource

, United States Geological Survey Circular, vol.1139, 1998.

T. Kolbe, J. Marcais, Z. Thomas, B. W. Abbott, J. R. De-dreuzy et al., Coupling 3D groundwater modeling with CFC-based age dating to classify local groundwater circulation in an unconfined crystalline aquifer, J. Hydrol, vol.543, pp.31-46, 2016.
URL : https://hal.archives-ouvertes.fr/insu-01316583

T. Kolbe, J. De-dreuzy, B. W. Abbott, L. Aquilina, T. Babey et al., Stratification of reactivity determines nitrate removal in groundwater, Proc. Natl. Acad. Sci, vol.116, pp.2494-2499, 2019.
URL : https://hal.archives-ouvertes.fr/insu-01999430