,
Information theory and an extension of the maximum likelihood principle, Proceedings of the 2nd International Symposium Information Theory, pp.267-281, 1973. ,
Temporal mapping of phytoplankton assemblages in Lake Geneva: annual and interannual changes in their patterns of succession, Limnol. Oceanogr, vol.47, pp.1355-1366, 2002. ,
The ecological role of water-column microbes in the Sea, Mar. Ecol. Prog. Ser, vol.10, pp.257-263, 1983. ,
Microbial structuring of marine ecosystems, Nat. Rev. Microbiol, vol.5, pp.782-791, 2007. ,
A proposal for the reclassification of Bdellovibrio stolpii and Bdellovibrio starrii into a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively, Int. J. Syst. Evol. Microbiol, vol.50, pp.219-224, 2000. ,
Reclassification of salt-water Bdellovibrio sp. as Bacteriovorax marinus sp. nov. and Bacteriovorax litoralis sp. nov, Int. J. Syst. Evol. Microbiol, vol.54, pp.1011-1016, 2004. ,
Gephi: an open source software for exploring and manipulating networks, Proceedings of the BT -International AAAI Conference on Weblogs and Social Media, pp.361-362, 2009. ,
, GenBank. Nucleic Acids Res, vol.41, pp.36-42, 2013.
A 2-Year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France), Microb. Ecol, vol.61, pp.941-954, 2011. ,
Predataxis behavior in Myxococcus xanthus, Proc. Natl. Acad. Sci. U.S.A, vol.105, pp.17127-17132, 2008. ,
Dissolved Organic Matter. Biogeochemistry, Dynamics, and Environmental Significance in Soils, 1st Edn, 2011. ,
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis, Biol. Med, vol.17, pp.540-552, 2000. ,
Prey bacteria shape the community structure of their predators, ISME J, vol.5, pp.1314-1322, 2011. ,
Sharing of prey: coinfection of a bacterium by a virus and a prokaryotic predator, mBio, vol.3, pp.51-63, 2012. ,
A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus, ISME J, vol.7, pp.148-160, 2013. ,
Spatial organization of Myxococcus xanthus during fruiting body formation, J. Bacteriol, vol.189, pp.9126-9130, 2007. ,
Diversity and evolution of Bdellovibrio-andlike organisms (BALOs), reclassification of Bacteriovorax starrii as Peredibacter starrii gen. nov., comb. nov., and description of the Bacteriovorax-Peredibacter clade as Bacteriovoracaceae fam. nov, Int. J. Syst. Evol. Microbiol, vol.54, pp.1439-1452, 2004. ,
dunn.test: Dunn's test of Multiple Comparisons Using Rank Sums, 2017. ,
MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Res, vol.32, pp.1792-1797, 2004. ,
Updating the 97% identity threshold for 16S ribosomal RNA OTUs, Bioinformatics, vol.34, pp.2371-2375, 2018. ,
The rise of pathogens: predation as a factor driving the evolution of human pathogens in the environment, Microb. Ecol, vol.65, pp.860-868, 2013. ,
Bdellovibrio sp: an important bacterial predator in Lake Geneva?, J. Microbiol. Biotechnol, vol.5, p.157, 2020. ,
The microbial loop -25 years later, J. Exp. Mar. Bio. Ecol, vol.366, pp.99-103, 2008. ,
Viruses and protists cause similar bacterial mortality in coastal seawater, Limnol. Oceanogr, vol.40, pp.1236-1242, 1995. ,
Goeveg: Functions for Community Data and Ordinations, 2017. ,
EcoSimR: Null Model Analysis for Ecological Data, 2015. ,
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0, Syst. Biol, vol.59, pp.307-321, 2010. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00511784
Silvanigrella aquatica gen. nov., sp. nov., isolated from a freshwater lake, description of silvanigrellaceae fam. nov. and silvanigrellales ord. nov., reclassification of the order bdellovibrionales in the class oligoflexia, reclassification of the famil, Int. J. Syst. Evol. Microbiol, vol.67, pp.2555-2568, 2017. ,
Strong impact of anthropogenic contamination on the co-occurrence patterns of a riverine microbial community, Environ. Microbiol, vol.19, pp.4993-5009, 2017. ,
The need for ecological monitoring of freshwaters in a changing world: a case study of Lakes Annecy, Bourget, and Geneva, Environ. Monit. Assess, vol.186, pp.3455-3476, 2014. ,
Viruses in aquatic ecosystems: important advancements of the last 20 years and prospects for the future in the field of microbial oceanography and limnology, Adv. Oceanogr. Limnol, vol.1, pp.97-141, 2010. ,
Hydrodynamic hunters, Biophys. J, vol.112, pp.1282-1289, 2017. ,
Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants, Environ. Microbiol, vol.16, pp.2421-2432, 2014. ,
Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant, ISME J, vol.9, pp.683-695, 2015. ,
Isolation and classification of Bdellovibrio and like organisms, Curr. Protoc. Microbiol. Chapter, 2012. ,
Phylogenetic diversity and evolution of predatory prokaryotes, Microbiol. Monogr, vol.4, pp.12-56, 2006. ,
Abundance, diversity and seasonal dynamics of predatory bacteria in aquaculture zero discharge systems, FEMS Microbiol. Ecol, vol.89, pp.149-161, 2014. ,
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified, BMC Evol. Biol, vol.6, p.29, 2006. ,
Estimates of bacterial growth from changes in uptake rates and biomass, Appl. Environ. Microbiol, vol.44, pp.1296-1307, 1982. ,
Reclassification of Bacteriovorax marinus as halobacteriovorax marinus gen. Nov., comb. nov. and Bacteriovorax litoralis as halobacteriovorax litoralis comb. nov.; description of halobacteriovoraceae fam. nov. in the class Deltaproteobacteria, Int. J. Syst. Evol. Microbiol, vol.65, pp.593-597, 2015. ,
MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets, Mol. Biol. Evol, vol.33, pp.1870-1874, 2016. ,
OTUtable: North Temperate Lakes -Microbial observatory 16S Time Series Data and Functions, 2018. ,
Evolutionary diversification of the RomR protein of the invasive deltaproteobacterium, Bdellovibrio bacteriovorus. Sci. Rep, vol.9, p.5007, 2019. ,
Swarmv2: highly-scalable and high-resolution amplicon clustering, PeerJ, vol.2015, pp.1-12, 2015. ,
Cutadapt removes adapter sequences from high-throughput sequencing reads, EMBnet.J, vol.17, pp.1-3, 2011. ,
Comparative analysis of Myxococcus predation on soil bacteria, Appl. Environ. Microbiol, vol.76, pp.6920-6927, 2010. ,
Viral control of bacterial growth efficiency in marine pelagic environments, Limnol. Oceanogr, vol.54, 1901. ,
Package "vegan" title community ecology package, Community Ecol. Packag, vol.2, pp.1-297, 2019. ,
Diversity, dynamics and distribution of Bdellovibrio and like organisms in peri-alpine lakes, Appl. Environ. Microbiol, vol.85, 2019. ,
Bacterial predation: 75 years and counting!, Environ. Microbiol, vol.18, pp.766-779, 2016. ,
Predation on prokaryotes in the water column and its ecological implications, Nat. Rev. Microbiol, vol.3, pp.537-546, 2005. ,
, , 2013.
, The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nuclelic Acids Res, vol.41, pp.590-596
, R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing, 2018.
The relative importance of viral lysis and nanoflagellate grazing for prokaryote mortality in temperate lakes, Freshw. Biol, vol.59, pp.300-311, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01983261
A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective, Science, vol.303, pp.689-692, 2004. ,
The phytoplankton of Lake Geneva, Rapp. Comm. Int. Prot. Eaux Léman Contre Pollut. Camp, pp.103-115, 2014. ,
VSEARCH: a versatile open source tool for metagenomics, PeerJ, vol.4, pp.1-22, 2016. ,
MrBayes 3 . 2: efficient bayesian phylogenetic inference and model choice across a large model space, Syst. Biol, vol.61, pp.539-542, 2012. ,
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness, vol.71, pp.1501-1506, 2005. ,
Gliding motility in bacteria Insights from, Studies of Myxococcus xanthus. Microbiol. Mol. Boil. Rev, vol.63, pp.621-641, 1999. ,
Bacteriolytic enzymes produced by Myxococcus xanthus, J. Bacteriol, vol.110, pp.236-245, 1972. ,
Ecology and characteristics of Bdellovibrios from three tropical marine habitats, Mar. Biol, vol.119, pp.313-320, 1994. ,
Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines, Microb. Biotechnol, vol.9, pp.209-223, 2016. ,
Assessment of 16S rRNA gene primers for studying bacterial community structure and function of aging flue-cured tobaccos, AMB Expr, vol.8, pp.1-9, 2018. ,
Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies, PLoS One, vol.4, p.7401, 2009. ,
ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics, 2018. ,
A study of the occurrence and distribution of Bdellovibrios, Microb. Ecol, vol.15, pp.9-20, 1988. ,
Data report: exploring the presence of Bdellovibrio and like organisms in deep-sea sediment by culture-independent and culture-dependent methods, Int. Ocean Disc. Prog, vol.349, pp.4-7, 2018. ,
Halobacteriovorax, an underestimated predator on bacteria: potential impact relative to viruses on bacterial mortality, ISME J, vol.10, pp.491-499, 2016. ,
Injections of predatory bacteria work alongside host immune cells to treat Shigella infection in Zebrafish larvae, Curr. Biol, vol.26, pp.3343-3351, 2016. ,