Alternative stable states in ecology, Front. Ecol. Environ, vol.1, p.1, 2003. ,
Is planktonic diversity well recorded in sedimentary DNA? Toward the reconstruction of past protistan diversity, Microb. Ecol, vol.70, pp.865-875, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01254671
Long-term dynamics in microbial eukaryotes communities : a palaeolimnological view based on sedimentary DNA, Mol. Ecol, vol.25, pp.5925-5943, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01568922
Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming, Environ. Microbiol, vol.19, pp.2873-2892, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01598575
To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments, J. Paleolimnol, vol.58, pp.479-495, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01734500
Protists are microbes too: a perspective, ISME J, vol.3, pp.4-12, 2009. ,
Management of eutrophication for lakes subject to potentially irreversible change, Ecol. Appl, vol.9, pp.751-771, 1999. ,
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years, ISME J, vol.9, pp.563-580, 2015. ,
Statistical and probability analysis of hydrologic data, part III: analysis of variance, covariance and time series, Handbook of Applied Hydrology, a Compendium of Water-Resources Technology, pp.8-68, 1964. ,
Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data, FEMS Microbiol. Ecol, vol.93, pp.1-14, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01599376
Evidence for an active rare biosphere within freshwater protists community, Mol. Ecol, vol.24, pp.1236-1247, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01245679
DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity, J. Paleolimnol, vol.58, pp.1-21, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01607544
First human impacts and responses of aquatic systems: a review of palaeolimnological records from around the world, Anthr. Rev, vol.5, pp.28-68, 2018. ,
UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nat. Methods, vol.10, pp.996-998, 2013. ,
UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, vol.27, pp.2194-2200, 2011. ,
Analytical pyrolysis of dipeptides containing proline and amino acids with polar side chains. Novel 2,5-diketopiperazine markers in the pyrolysates of proteins, J. Anal. Appl. Pyrolysis, vol.95, pp.145-155, 2012. ,
Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns, Mol. Ecol, vol.25, pp.2286-2301, 2016. ,
Marine microbial community dynamics and their ecological interpretation, Nat. Rev. Microbiol, vol.13, pp.133-146, 2015. ,
A comparison of sediment varves (1950-2003 AD) in two adjacent lakes in northern sweden, J. Paleolimnol, vol.35, pp.837-853, 2006. ,
Decadal diagenetic effects on d13C and d15N studied in varved lake sediment, Limnol. Oceanogr, vol.54, pp.917-924, 2009. ,
Characterization of protistan assemblages in the ross sea, antarctica, by denaturing gradient gel electrophoresis, Appl. Environ. Microbiol, vol.70, pp.2028-2037, 2004. ,
Quantifying long-term recurrence in planktonic microbial eukaryotes, Mol. Ecol, vol.28, pp.923-935, 2018. ,
Under-ice availability of phytoplankton lipids is key to freshwater zooplankton winter survival, Sci. Rep, vol.7, p.11543, 2017. ,
Ecology under lake ice, Ecol. Lett, vol.20, pp.98-111, 2017. ,
Generalized additive models, Stat. Sci, vol.1, pp.297-310, 1986. ,
iNEXT: an R package for interpolation and extrapolation of species diversity (Hill numbers), Methods Ecol. Evol, vol.7, pp.1451-1456, 2016. ,
Does chlorophyll a provide the best index of phytoplankton biomass for primary productivity studies?, Biogeosci. Discuss, vol.4, pp.707-745, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00330232
Resilience of alternative stable states during the recovery of shallow lakes from eutrophication: Lake Veluwe as a case study, Ecosystems, vol.10, pp.4-16, 2007. ,
Pyrolysis of chlorophyll a after preliminary heating at a moderate temperature: Implications for the origin of prist-1-ene on kerogen pyrolysis, J. Anal. Appl. Pyrolysis, vol.18, pp.207-218, 1991. ,
ecp: An R Package for Nonparametric Multiple Change Point Analysis of Multivariate Data, vol.8, 2013. ,
Trophic structure, species richness and biodiversity in Danish lakes: changes along a phosphorus gradient, Freshw. Biol, vol.45, pp.201-218, 2000. ,
Warmer climates boost cyanobacterial dominance in shallow lakes, Glob. Chang. Biol, vol.18, pp.118-126, 2012. ,
Phytoplankton and primary production, Polar Lakes and Rivers: Limnology of Arctic and Antarctic Aquatic Ecosystems, pp.157-178, 2008. ,
Combining Limnology and Paleolimnology: A Refined Understanding of Environmental Sediment Signal Formation in a Varved Lake, vol.2, p.1097345, 2017. ,
Inter-annual variation in seasonal diatom sedimentation reveals the importance of late winter processes and their timing for sediment signal formation, Limnol. Ocean, vol.64, pp.1186-1199, 2019. ,
Lacustrine organic geochemistryan overview of indicators of organic matter sources and diagenesis in lake sediments, Nat. Ecol. Evol, vol.20, pp.317-324, 1993. ,
Cogs in the endless machine: Lakes, climate change and nutrient cycles: a review, Sci. Total Environ, vol.434, pp.130-142, 2012. ,
Seasonal dynamics of heterotrophic and plastidic protists in the water column of Lake Biwa, Japan. Aquat. Microb. Ecol, vol.80, pp.123-137, 2017. ,
Phytoplankton dynamics and structure : a comparative analysis in natural and man-made water bodies of different trophic state, Hydrobiologia, vol.438, pp.65-74, 2000. ,
A guide to the natural history of freshwater lake bacteria. Microbiol, Mol. Biol. Rev, vol.75, pp.14-49, 2011. ,
Preservation of algaenan and proteinaceous material during the oxic decay of Botryococcus braunii as revealed by pyrolysis-gas chromatography/mass spectrometry and 13C NMR spectroscopy, Org. Geochem, vol.34, pp.261-270, 2003. ,
Investigating molecular changes in organic matter composition in two Holocene lake-sediment records from central Sweden using pyrolysis-GC/MS, J. Geophys. Res. Biogeosciences, vol.122, pp.1423-1438, 2017. ,
, The vegan Package. Community Ecology Package. Available online at, 2015.
Assessing and managing nutrient-enhanced eutrophication in estuarine and coastal waters: interactive effects of human and climatic perturbations, Ecol. Eng, vol.26, pp.40-54, 2006. ,
Climate. Blooms like it hot, Science, vol.320, pp.57-58, 2008. ,
Non-detrital Si concentrations as an estimate of diatom concentrations in lake sediments and suspended material, Chem. Geol, vol.177, pp.229-239, 2001. ,
Climatic influence on the inter-annual variability of late-Holocene minerogenic sediment supply in a boreal forest catchment, Earth Surf. Process. Landforms, vol.35, pp.390-398, 2010. ,
Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming, Nat. Clim. Chang, vol.2, pp.809-813, 2012. ,
Heterotrophic and mixotrophic nanoflagellates in a mesotrophic lake: abundance and grazing impacts across season and depth, Limnol. Oceanogr, vol.62, pp.632-644, 2017. ,
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB, Nucleic Acids Res, vol.35, pp.7188-7196, 2007. ,
Improved methods for sampling, photographing and varve-counting of varved lake sediments, Boreas, vol.10, pp.255-258, 1981. ,
Photographic demonstration of the annual nature of a varve type common in N. Swedish lake sediments, Hydrobiologia, vol.140, pp.93-95, 1986. ,
Climate signal in varve thickness: Lake La Cruz (Spain), a case study, J. Paleolimnol, vol.40, pp.703-714, 2008. ,
Lake diatom responses to warming: reviewing the evidence, J. Paleolimnol, vol.54, pp.1-35, 2015. ,
Wavelength dispersive X-ray fluorescence spectroscopy as a fast, non-destructive and cost-effective analytical method for determining the geochemical composition of small loose-powder sediment samples, J. Paleolimnol, vol.52, pp.265-276, 2014. ,
Geochemical assessment of an annually laminated lake sediment record from northern Sweden: a multi-core, multi-element approach, J. Paleolimnol, vol.51, pp.499-514, 2014. ,
Regular build-up of the spring phytoplankton maximum before ice-break in a boreal lake, Limnol. Oceanogr, vol.61, pp.240-253, 2016. ,
Fundamentals of microbial community resistance and resilience, Front. Microbiol, vol.3, p.417, 2012. ,
Role of microbes in pelagic food webs: a revised concept, Limnol. Oceanogr, vol.33, pp.1225-1227, 1988. ,
Marked seasonality and high spatial variability of protist communities in shallow freshwater systems, ISME J, vol.9, pp.1941-1953, 2015. ,
Deciphering the effect of climate change and separating the influence of confounding factors in sediment core records using additive models, Limnol. Ocean, vol.54, pp.2529-2541, 2009. ,
Modelling palaeoecological time series using generalised additive models, Front. Ecol. Evol, vol.6, p.149, 2018. ,
Effects of growth condition on succession patterns in tropical phytoplankton assemblages subjected to experimental eutrophication, J. Plankton Res, vol.35, pp.1141-1153, 2013. ,
High-throughput characterization of sediment organic matter by pyrolysis-gas chromatography/mass spectrometry and multivariate curve resolution: a promising analytical tool in (paleo)limnology, Anal. Chim. Acta, vol.880, pp.93-102, 2015. ,
Spatial variability of organic matter molecular composition and elemental geochemistry in surface sediments of a small boreal Swedish lake, Biogeosciences, vol.14, pp.1773-1792, 2017. ,
Combining high-throughput sequencing of sedaDNA and traditional paleolimnological techniques to infer historical trends in cyanobacterial communities, Environ. Sci. Technol, vol.52, pp.6842-6853, 2018. ,
The european small subunit ribosomal RNA database, Nucleic Acids Res, vol.28, pp.175-176, 2000. ,
Microbial community composition along a 50 000-year lacustrine sediment sequence, FEMS Microbiol. Ecol, vol.94, pp.1-14, 2018. ,
Comparison using two years with ice-out that differed by more than three how does changing ice-out affect arctic versus ice-out that differed by more than three weeks, vol.10, pp.1-20, 2018. ,
Nonlinear temperature response of lake ice breakup, Geophys. Res. Lett, vol.31, pp.6-9, 2004. ,
Phylogeny of fish-infecting Calyptospora species (Apicomplexa: Eimeriorina), Parasitol. Res, vol.111, pp.1331-1342, 2012. ,
ggplot2: Elegant Graphics for Data Analysis, pp.9-26, 2016. ,
Lakes and reservoirs as sentinels, integrators, and regulators of climate change, Limnol. Oceanogr, vol.54, pp.2273-2282, 2009. ,
Package 'mgcv, 2015. ,