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Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia Alexandre M. Sebbenn 1632415-0 Celine Blanc-Jolivet 1630050-0 Malte Mader 1630051-0 Barbara R. V. Meyer-Sand 1630049-0 Kathelyn Paredes-Villanueva 1630052-0 Eurídice N. Honorio Coronado 1155446-0 Carmen R. García-Dávila 1632414-0 Niklas Tysklind 34ec130310142f19b6ea4e3c3f09da0c ecofog.gf niklas-tysklind 736848 36819-736848 http://www.researcherid.com/rid/A-5275-2017 https://orcid.org/0000-0002-6617-7875 https://www.idref.fr/201735032 http://www.researcherid.com/rid/http://www.researcherid.com/rid/A-5275-2017 Valérie Troispoux c736f3cd8d37776a81acf8fada800594 ecofog.gf 958744 849480-958744 https://orcid.org/0000-0002-1118-1367 Adline Delcamp 76c270dc12c9a01fe300ab68b7b87a4d inra.fr 1205322 1241959-1205322 Bernd Degen 849141-0 Migration ProdInra 9e5ed7d56b52b3d4383123b1ffb42236 inrae.fr 2020-05-25 20:21:08 2025-06-12 15:13:13 2020-05-25 20:21:08 2019 0 inra_etatDocument_local_0 inra_publicVise_local_SC PGTB doi:10.15454/1.5572396583599417E12 contributor Migration ProdInra 9e5ed7d56b52b3d4383123b1ffb42236 inrae.fr CCSD hal-02619673 https://hal.inrae.fr/hal-02619673 sebbenn:hal-02619673 <i>Conservation Genetics Resources</i>, 2019, 11 (3), pp.341-343. <a target="_blank" href="https://dx.doi.org/10.1007/s12686-019-01097-9">⟨10.1007/s12686-019-01097-9⟩</a> Conservation Genetics Resources, 2019, 11 (3), pp.341-343. ⟨10.1007/s12686-019-01097-9⟩ CIRAD - Centre de coopération internationale en recherche agronomique pour le développement AgroParisTech Université des Antilles CNRS - Centre national de la recherche scientifique INRA - Institut national de la recherche agronomique EcoFoG Université de Guyane Archive ouverte en agrobiosciences Institut National de Recherche en Agriculture, Alimentation et Environnement ANR BioGeCo – Biodiversité Gènes et Communautés TEST3-HALCNRS collection test collection test 5 France Génomique Plateforme Génome Transcriptome de Bordeaux Institut écologie et environnement du CNRS Université de Bordeaux International No Yes Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia Alexandre M. Sebbenn 1632415-0 Celine Blanc-Jolivet 1630050-0 Malte Mader 1630051-0 Barbara R. V. Meyer-Sand 1630049-0 Kathelyn Paredes-Villanueva 1630052-0 Eurídice N. Honorio Coronado 1155446-0 Carmen R. García-Dávila 1632414-0 Niklas Tysklind 34ec130310142f19b6ea4e3c3f09da0c ecofog.gf niklas-tysklind 736848 36819-736848 http://www.researcherid.com/rid/A-5275-2017 https://orcid.org/0000-0002-6617-7875 https://www.idref.fr/201735032 http://www.researcherid.com/rid/http://www.researcherid.com/rid/A-5275-2017 Valérie Troispoux c736f3cd8d37776a81acf8fada800594 ecofog.gf 958744 849480-958744 https://orcid.org/0000-0002-1118-1367 Adline Delcamp 76c270dc12c9a01fe300ab68b7b87a4d inra.fr 1205322 1241959-1205322 Bernd Degen 849141-0 105092 1877-7252 1877-7260 Conservation Genetics Resources Springer 11 3 341-343 2019 10.1007/s12686-019-01097-9 482930 000480748400023 English Jacaranda copaia massARRAY tropical timber RADSeq MiSeq geographical origin DNA-fingerprints Life Sciences [q-bio] Journal articles Journal articles Journal articles

Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia. We used 407 nuclear SNPs, 29 chloroplast, and 31 mitochondrial loci to genotype 92 individuals from Brazil, Bolivia, French Guiana, and Peru. Based on high amplification rates and genetic differentiation among populations, 113 nuclear SNPs, 11 chloroplast, and 4 mitochondrial loci were selected, and their use validated for genetic tracking of timber origin.

Instituto Florestal de São Paulo

Rua Profa. Ana C. M. Ferraz, 78 CEP 13412-018 Piracicaba, SP, Brazil

Thünen Institute of Forest Genetics

https://ror.org/00987cb86 Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University UNESP

Rua Quirino de Andrade, 215 - Centro - São Paulo/SP - CEP 01049-010

http://www.unesp.br/ Universidad Autonoma Gabriel René Moreno

https://ror.org/010ywy128 Instituto de Investigaciones de la Amazonía Peruana IIAP

Carretera Iquitos-Nauta km. 4.5, Iquitos, Perú

196951402 0000000404457569 200617664D https://ror.org/04q9vef57 Ecologie des forêts de Guyane UMR ECOFOG 2015-01-01 2019-12-31

745 BP 709 - F-97387 Kourou Cedex France

http://www.ecofog.gf/ Biodiversité, Gènes & Communautés BioGeCo 2007-01-01 2019-12-31

Site de recherche Forêt - Bois de Pierroton - 69, route d'Arcachon F-33612 Cestas Cedex FRANCE

https://www6.bordeaux-aquitaine.inrae.fr/biogeco 0000000121539871 https://ror.org/05kpkpg04 Centre de Coopération Internationale en Recherche Agronomique pour le Développement Cirad 1984-06-01

Siège 42, rue Scheffer 75116 Paris

http://www.cirad.fr https://ror.org/01x3gbx83 Institut National de la Recherche Agronomique INRA 1946-05-18 2019-12-31

http://www.inra.fr 139408088 https://ror.org/02kbmgc12 AgroParisTech 2007-01-01

22 place de l'Agronomie CS 20040 91123 Palaiseau cedex

https://www.agroparistech.fr/ 188204024 https://ror.org/00nb39k71 Université de Guyane UG

Campus de Troubiran - BP 20792- 97337 Cayenne Cedex - Guyane

https://www.univ-guyane.fr 02636817X 0000000122597504 https://ror.org/02feahw73 Centre National de la Recherche Scientifique CNRS 1939-10-19

https://www.cnrs.fr/ 187841578 https://ror.org/02ryfmr77 Université des Antilles UA 2015-01-01

Université des Antilles | Fouillole - BP 250 - 97157 Pointe-à-Pitre

http://www.univ-antilles.fr/ 175206562 https://ror.org/057qpr032 Université de Bordeaux UB

35, place Pey Berland - 33076 Bordeaux

http://www.u-bordeaux.fr/ ANR-10-EQPX-0016 Equipements d'excellence XYLOFOREST Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " 2010 ANR-10-LABX-0025 Laboratoires d'excellence CEBA CEnter of the study of Biodiversity in Amazonia 2010