T. B. Saito and D. H. Walker, Ehrlichioses: an important One Health opportunity, Vet Sci, vol.3, issue.20, 2016.

M. Perez, M. Bodor, C. Zhang, Q. Xiong, Q. Xiong et al., Human infection with Ehrlichia canis accompanied by clinical signs in Venezuela, 2006.

, Ann N Y Acad Sci, vol.1078, pp.110-117

R. J. Thomas, J. S. Dumler, and J. A. Carlyon, Current management of human granulocytic anaplasmosis, human monocytic ehrlichiosis and Ehrlichia ewingii ehrlichiosis, Expert Rev Anti Infect Ther, vol.7, pp.709-722, 2009.

E. Zweygarth, H. Schöl, K. Lis, A. Cabezas-cruz, C. Thiel et al., In vitro culture of a novel genotype of Ehrlichia sp. from Brazil, Transbound Emerg Dis, vol.60, issue.2, pp.86-92, 2013.
URL : https://hal.archives-ouvertes.fr/hal-02647411

A. Cabezas-cruz, E. Zweygarth, M. Ribeiro, J. Da-silveira, J. De-la-fuente et al., New species of Ehrlichia isolated from Rhipicephalus (Boophilus) microplus shows an ortholog of the E. canis major immunogenic glycoprotein gp36 with a new sequence of tandem repeats, Parasit Vectors, vol.5, p.291, 2012.
URL : https://hal.archives-ouvertes.fr/hal-02649824

A. Cabezas-cruz, M. Vancová, E. Zweygarth, M. Ribeiro, L. Grubhoffer et al., Ultrastructure of Ehrlichia mineirensis, a new member of the Ehrlichia genus, Vet Microbiol, vol.167, pp.455-458, 2013.
URL : https://hal.archives-ouvertes.fr/hal-02649724

A. Cabezas-cruz, E. Zweygarth, M. Vancova, M. Broniszewska, L. Grubhoffer et al., Ehrlichia minasensis sp. nov., isolated from the tick Rhipicephalus microplus, Int J Syst Evol Microbiol, vol.66, pp.1426-1430, 2016.
URL : https://hal.archives-ouvertes.fr/hal-02635025

A. Cabezas-cruz, J. J. Valdés, and J. De-la-fuente, The glycoprotein TRP36 of Ehrlichia sp. UFMG-EV and related cattle pathogen Ehrlichia sp. UFMT-BV evolved from a highly variable clade of E. canis under adaptive diversifying selection, Parasit Vectors, vol.7, 2014.
URL : https://hal.archives-ouvertes.fr/hal-02637601

D. M. Aguiar, T. F. Ziliani, X. Zhang, A. Melo, I. A. Braga et al., A novel Ehrlichia genotype strain distinguished by the TRP36 gene naturally infects cattle in Brazil and causes clinical manifestations associated with ehrlichiosis, Ticks Tick Borne Dis, vol.5, pp.537-544, 2014.

A. A. Gajadhar, V. Lobanov, W. B. Scandrett, J. Campbell, and B. Al-adhami, A novel Ehrlichia genotype detected in naturally infected cattle in North America, Vet Parasitol, vol.173, pp.324-329, 2010.

V. Cicculli, S. Masse, L. Capai, X. De-lamballerie, R. Charrel et al., First detection of Ehrlichia minasensis in Hyalomma marginatum ticks collected from cattle in Corsica, France, Vet Med Sci, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02611562

A. Rehman, F. J. Conraths, C. Sauter-louis, J. Krücken, and A. M. Nijhof, Epidemiology of tick-borne pathogens in the semi-arid and the arid agro-ecological zones of Punjab province, Pakistan. Transbound Emerg Dis, vol.66, pp.526-536, 2019.

Z. Hailemariam, J. Krücken, M. Baumann, J. S. Ahmed, P. Clausen et al., Molecular detection of tick-borne pathogens in cattle from southwestern Ethiopia, PLoS One, vol.12, 2017.

K. Thomson, T. Yaaran, A. Belshaw, L. Curson, L. Tisi et al., A new TaqMan method for the reliable diagnosis of Ehrlichia spp. in canine whole blood, Parasit Vectors, vol.11, p.350, 2018.

A. Cabezas-cruz, E. Zweygarth, M. Broniszweska, L. Passos, M. Ribeiro et al., Complete genome sequence of Ehrlichia mineirensis, a novel organism closely related to Ehrlichia canis with a new host association, Genome Announc, vol.3, pp.1450-1464, 2015.
URL : https://hal.archives-ouvertes.fr/hal-02629956

A. Bankevich, S. Nurk, D. Antipov, A. A. Gurevich, M. Dvorkin et al., SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J Comput Biol, vol.19, pp.455-477, 2012.

T. Mago and S. L. Salzberg, FLASH: Fast Length Adjustment of Short reads to improve genome assemblies, Bioinformatics, vol.27, pp.2957-2963, 2011.

A. I. Rissman, B. Mau, B. S. Biehl, A. E. Darling, J. D. Glasner et al., Reordering contigs of draft genomes using the Mauve aligner, Bioinformatics, vol.25, pp.2071-2073, 2009.

T. Seemann, Prokka: rapid prokaryotic genome annotation, Bioinformatics, vol.30, pp.2068-2069, 2014.

I. Carvalho, A. Melo, L. C. Freitas, R. V. Verçoza, A. S. Alves et al., Minimum infection rate of Ehrlichia minasensis in Rhipicephalus microplus and Amblyomma sculptum ticks in Brazil, Ticks Tick Borne Dis, vol.7, pp.849-852, 2016.

V. A. Lobanov, A. A. Gajadhar, B. Al-adhami, and H. M. Schwantje, Molecular study of free-ranging mule deer and white-tailed deer from British Columbia, Canada, for evidence of Anaplasma spp. and Ehrlichia spp, Transbound Emerg Dis, vol.59, pp.233-243, 2012.