Cold response in Saccharomyces cerevisiae: new functions for old mechanisms, FEMS Microbiology Reviews, vol.31, pp.327-341, 2007. ,
Salt Tolerance Conferred by Overexpression of a Vacuolar Na+/H+ Antiport in Arabidopsis, Science, vol.285, pp.1256-1258, 1999. ,
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
Ectomycorrhizal ecology under primary succession on coastal sand dunes: interactions involving Pinus contorta, suilloid fungi and deer, The New Phytologist, vol.169, pp.345-354, 2006. ,
Widespread selective sweeps throughout the genome of the model pathogenic fungi and identification of effector candidates, Molecular Ecology ,
URL : https://hal.archives-ouvertes.fr/hal-01448856
CO2 sensing in fungi and beyond, Current Opinion in Microbiology, vol.9, pp.572-578, 2006. ,
Sensing the environment: lessons from fungi, Nature Reviews Microbiology, vol.5, pp.57-69, 2007. ,
Bacterial adaptation to cold, Microbiology, vol.159, pp.2437-2443, 2013. ,
Galaxy: a web-based genome analysis tool for experimentalists, Current Protocols in Molecular Biology, FM Ausubel (ed), pp.1-21, 2010. ,
Genetic isolation between two recently diverged populations of a symbiotic fungus, Molecular Ecology, vol.24, pp.2747-2758, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01303143
Discovery of the Aquaporins and Development of the Field, Aquaporins Handbook of Experimental Pharmacology, PDE Beitz, pp.3-28, 2009. ,
Red and Green Algal Origin of Diatom Membrane Transporters: Insights into Environmental Adaptation and Cell Evolution, PLOS ONE, vol.6, 2011. ,
Global Transcriptional Responses of Fission Yeast to Environmental Stress, Molecular Biology of the Cell, vol.14, pp.214-229, 2003. ,
, Version postprint Comment citer ce document
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
How metal-tolerant ecotypes of ectomycorrhizal fungi protect plants from heavy metal pollution, Annals of Forest Science, vol.68, pp.17-24, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00930658
The late Quaternary history of lodgepole and jack pines, Canadian Journal of Forest Research, vol.15, pp.749-772, 1985. ,
Size, distribution and biomass of genets in populations of Suillus bovinus (L.: Fr.) Roussel revealed by somatic incompatibility, New Phytologist, vol.128, pp.225-234, 1994. ,
The variant call format and VCFtools, Bioinformatics, vol.27, pp.2156-2158, 2011. ,
The aquaporin gene family of the ectomycorrhizal fungus Laccaria bicolor: lessons for symbiotic functions, New Phytologist, vol.190, pp.927-940, 2011. ,
Genetics of Natural Populations. XVI. Altitudinal and Seasonal Changes Produced by Natural Selection in Certain Populations of Drosophila Pseudoobscura and Drosophila Persimilis, Genetics, vol.33, pp.158-176, 1948. ,
Population genomics and local adaptation in wild isolates of a model microbial eukaryote, Proceedings of the National Academy of Sciences, 2011. ,
Genetic evidence of local adaptation of wheat yellow rust (Puccinia striiformis f. sp. tritici) within France, Molecular ecology, vol.14, pp.2065-2073, 2005. ,
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study, Molecular Ecology, vol.14, pp.2611-2620, 2005. ,
, Version postprint Comment citer ce document
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
LEA: An R package for landscape and ecological association studies, Methods in Ecology and Evolution, vol.6, pp.925-929, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02004815
Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models, Molecular Biology and Evolution, vol.30, pp.1687-1699, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00861179
Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data, Genetics, vol.195, pp.979-992, 2013. ,
Galaxy: a platform for interactive large-scale genome analysis, Genome Research, vol.15, pp.1451-1455, 2005. ,
The population biology of fungal invasions, Molecular Ecology, vol.24, pp.1969-1986, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02328879
Genomic sequencing reveals historical, demographic and selective factors associated with the diversification of the fire-associated fungus Neurospora discreta, Molecular Ecology, vol.22, pp.5657-5675, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01303142
Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes, Molecular Ecology, vol.23, pp.753-773, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01302695
On the Origin and Spread of the Scab Disease of Apple: Out of Central Asia, PLOS ONE, vol.3, p.1455, 2008. ,
Phylogeographic structure of jack pine, 2010. ,
, Pinaceae) supports the existence of a coastal glacial refugium in northeastern North America
, American Journal of Botany, vol.97, pp.1903-1912
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences, Genome Biology, vol.11, 2010. ,
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
The DNA Damage Response in Filamentous Fungi, Fungal Genetics and Biology, vol.35, pp.183-195, 2002. ,
A Phosphate Transporter from Medicago truncatula Involved in the Acquisition of Phosphate Released by Arbuscular Mycorrhizal Fungi, The Plant Cell, vol.14, pp.2413-2429, 2002. ,
Osmoregulated ABC-transport system of Lactococcus lactis senses water stress via changes in the physical state of the membrane, Proceedings of the National Academy of Sciences, vol.97, pp.7102-7106, 2000. ,
Very high resolution interpolated climate surfaces for global land areas, International Journal of Climatology, vol.25, pp.1965-1978, 2005. ,
Identities and distributions of the coinvading ectomycorrhizal fungal symbionts of exotic pines in the Hawaiian Islands, Biological Invasions, vol.15, pp.2373-2385, 2013. ,
High-affinity ammonium transporters and nitrogen sensing in mycorrhizas, Trends in Microbiology, vol.11, pp.53-55, 2003. ,
The genomic basis of adaptive evolution in threespine sticklebacks, Nature, vol.484, pp.55-61, 2012. ,
Nonneutral admixture of immigrant genotypes in African Drosophila melanogaster populations from Zimbabwe, Molecular Biology and Evolution, vol.20, pp.1329-1337, 2003. ,
ANGSD: Analysis of Next Generation Sequencing Data, BMC Bioinformatics, vol.15, p.356, 2014. ,
Molecular aspects of bacterial pH sensing and homeostasis, Nature Reviews Microbiology, vol.9, pp.330-343, 2011. ,
, Version postprint Comment citer ce document
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
Fast gapped-read alignment with Bowtie 2, Nature Methods, vol.9, pp.357-359, 2012. ,
The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards, Molecular Ecology, vol.25, pp.306-323, 2016. ,
Reverse Ecology" and the Power of Population Genomics, Evolution, vol.62, pp.2984-2994, 2008. ,
The sequence alignment/map format and SAMtools, Bioinformatics, vol.25, pp.2078-2079, 2009. ,
Cold, salinity and drought stresses: an overview, Archives of Biochemistry and Biophysics, vol.444, pp.139-158, 2005. ,
A Phosphate Transporter Gene from the Extra-Radical Mycelium of an Arbuscular Mycorrhizal Fungus Glomus intraradices Is Regulated in Response to Phosphate in the Environment, Molecular Plant-Microbe Interactions, vol.14, pp.1140-1148, 2001. ,
The plasma membrane transport systems and adaptation to salinity, Journal of Plant Physiology, vol.171, pp.1787-1800, 2014. ,
Genetic structure and local adaptation of European wheat yellow rust populations: the role of temperature-specific adaptation, Evolutionary Applications, vol.5, pp.341-352, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01000343
The genetic basis of adaptive melanism in pocket mice, Proceedings of the National Academy of Sciences, vol.100, pp.5268-5273, 2003. ,
, Version postprint Comment citer ce document
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
Intracellular Sequestration of Sodium by a Novel Na + /H + Exchanger in Yeast Is Enhanced by Mutations in the Plasma Membrane H + -ATPase. Insights into mechanisms of sodium tolerance, Journal of Biological Chemistry, vol.272, pp.26145-26152, 1997. ,
Molecular Signatures of Natural Selection, Annual Review of Genetics, vol.39, pp.197-218, 2005. ,
Genomic scans for selective sweeps using SNP data, 2005. ,
, Genome Research, vol.15, pp.1566-1575
Spatial patterns of variation due to natural selection in humans, Nature reviews. Genetics, vol.10, pp.745-755, 2009. ,
Global phylogenetic assessment of Suillus ITS sequences supports morphologically defined species while revealing synonymous and undescribed taxa, Mycologia ,
RNA helicases and abiotic stress, Nucleic Acids Research, vol.34, pp.3220-3230, 2006. ,
Differential involvement of the five RNA helicases in adaptation of Bacillus cereus ATCC 14579 to low growth temperatures, Applied and Environmental Microbiology, vol.76, pp.6692-6697, 2010. ,
SweeD: Likelihood-based detection of selective sweeps in thousands of genomes, Molecular Biology and Evolution, vol.30, pp.2224-2234, 2013. ,
Not every fungus is everywhere: scaling to the biogeography of fungal-plant interactions across roots, shoots and ecosystems, New Phytologist, vol.185, pp.878-882, 2010. ,
A strong species-area relationship for eukaryotic soil microbes: island size matters for ectomycorrhizal fungi, Ecology Letters, vol.10, pp.470-480, 2007. ,
, Version postprint Comment citer ce document
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
Measuring ectomycorrhizal fungal dispersal: macroecological patterns driven by microscopic propagules, Molecular Ecology, vol.21, pp.4122-4136, 2012. ,
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum, Nature Communications, vol.7, p.12662, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01439098
Aquaporins in yeasts and filamentous fungi, Biology of the Cell, vol.97, pp.487-500, 2005. ,
Protein cold adaptation strategy via a unique sevenamino acid domain in the icefish (Chionodraco hamatus) PEPT1 transporter, Proceedings of the National Academy of Sciences of the United States of America, vol.110, pp.7068-7073, 2013. ,
Adaptive Horizontal Gene Transfers between Multiple Cheese-Associated Fungi, Current Biology, vol.25, pp.2562-2569, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01302701
Genetic diversity in natural populations: a fundamental component of plant-microbe interactions, Current Opinion in Plant Biology, vol.11, pp.135-143, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-02333186
Microsatellite variation and differentiation in African and non-African populations of Drosophila simulans, Molecular Ecology, vol.15, pp.3895-3905, 2006. ,
Genetic subdivision and candidate genes under selection in North American grey wolves, Molecular Ecology, vol.25, pp.380-402, 2016. ,
Estimating individual admixture proportions from next generation sequencing data, Genetics, vol.195, pp.693-702, 2013. ,
A contribution towards a monograph of North American species of Suillus, 1964. ,
Version postprint Comment citer ce document, 2010. ,
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
RAxML Version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies, Bioinformatics, vol.30, pp.1312-1313, 2014. ,
The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species, Genome Research, vol.21, pp.2157-2166, 2011. ,
Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.361, pp.1947-1963, 2006. ,
Cold-and salinity stress-induced bipolar pea DNA helicase 47 is involved in protein synthesis and stimulated by phosphorylation with protein kinase C, The Plant Journal, vol.44, pp.76-87, 2005. ,
Late-Quaternary Vegetation Dynamics in North America: Scaling from Taxa to Biomes, Ecological Monographs, vol.74, pp.309-334, 2004. ,
Biogeography of Jack Pine, Canadian Journal of Botany, vol.45, pp.2201-2211, 1967. ,
wrote the manuscript with comments from all co-authors. Data accessibility DNA sequences: Short Read Archive accessions in Table S1 (Supporting information) ,
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420
, Comment citer ce document
Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes, Molecular Ecology, vol.26, issue.7, pp.2063-2076, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02624420