M. Keller, The science of grapevines : anatomy and physiology, 2010.

B. T. Townsley and N. R. Sinha, A new development: evolving concepts in leaf ontogeny, Annu Rev Plant Biol, vol.63, pp.535-62, 2012.

P. K. Boss and M. R. Thomas, Association of dwarfism and floral induction with a grape 'green revolution' mutation, Nature, vol.416, pp.847-50, 2002.

J. Chaib, L. Torregrosa, D. Mackenzie, C. P. Bouquet, A. Thomas et al., The grape microvine -a model system for rapid forward and reverse genetics of grapevines, Plant J, vol.62, pp.1083-92, 2010.

C. Houel, R. Chatbanyong, A. Doligez, M. Rienth, S. Foria et al., Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip, BMC Plant Biol, vol.15, p.205, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01194174

D. M. Filler, J. J. Luby, and P. D. Ascher, Incongruity in the interspecific crosses of Vitis L reproductive expression in the F1 progeny, Euphytica, vol.78, pp.155-64, 1994.

D. M. Filler, J. J. Luby, and P. D. Ascher, Incongruity in the interspecific crosses of Vitis L morphological abnormalities in the F2 progeny, Euphytica, vol.78, pp.227-264, 1994.

J. W. Welter, M. S. Grando, and E. Zyprian, Basics of grapevine genetic analysis. Enfield: Science Publishers, 2011.

E. Marguerit, C. Boury, A. Manicki, M. Donnart, G. Butterlin et al., Genetic dissection of sex determinism, inflorescence morphology and downy mildew resistance in grapevine, Theor Appl Genet, vol.118, pp.1261-78, 2009.

J. Chen, N. Wang, L. C. Fang, Z. C. Liang, S. H. Li et al., Construction of a highdensity genetic map and QTLs mapping for sugars and acids in grape berries, BMC Plant Biol, vol.15, p.28, 2015.

S. Yang, J. Fresnedo-ramírez, Q. Sun, D. C. Manns, G. L. Sacks et al., Next generation mapping of enological traits in an F2 interspecific grapevine hybrid family, PLoS One, 2016.

I. Fechter, L. Hausmann, E. Zyprian, M. Daum, D. Holtgrawe et al., QTL analysis of flowering time and ripening traits suggests an impact of a genomic region on linkage group 1 in Vitis, Theor Appl Genet, vol.127, pp.1857-72, 2014.

E. Duchene, G. Butterlin, V. Dumas, and D. Merdinoglu, Towards the adaptation of grapevine varieties to climate change: QTLs and candidate genes for developmental stages, Theor Appl Genet, vol.124, pp.623-658, 2012.

Y. H. Zhao, K. Su, Y. H. Guo, H. F. Ma, and X. W. Guo, Molecular genetic map construction and QTL analysis of fruit maturation period in grapevine, Genet Mol Res, 2016.

E. Zyprian, I. Ochssner, F. Schwander, S. Simon, L. Hausmann et al., Quantitative trait loci affecting pathogen resistance and ripening of grapevines, Mol Gen Genomics, vol.291, pp.1573-94, 2016.
URL : https://hal.archives-ouvertes.fr/hal-02635701

G. Cipriani, D. Gaspero, G. Canaguier, A. Jusseaume, J. Tassin et al., Molecular linkage maps: strategies, resources and achievements, Genetics, genomics and breeding in grapes, pp.111-147, 2011.

A. F. Adam-blondon, C. Roux, D. Claux, G. Butterlin, D. Merdinoglu et al., Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics, Theor Appl Genet, vol.109, pp.1017-1044, 2004.

T. D. Hvarleva, K. E. Russanov, A. T. Bakalova, M. K. Zhiponova, G. J. Djakova et al., Microsatellite linkage map based on F2 population from Bulgarian grapevine cultivar Storgozia, Biotechnol Biotechnol Equip, vol.23, pp.1126-1156, 2009.

J. D. Dunlevy, E. G. Dennis, K. L. Soole, M. V. Perkins, C. Davies et al., A methyltransferase essential for the methoxypyrazine-derived flavour of wine, Plant J, vol.75, pp.606-623, 2013.

J. W. Van-ooijen and J. Jansen, Genetic mapping in experimental populations, 2013.

Y. H. Li, L. M. Yang, M. Pathak, D. W. Li, X. M. He et al., Fine genetic mapping of cp: a recessive gene for compact (dwarf) plant architecture in cucumber, Cucumis sativus L. Theor Appl Genet, vol.123, pp.973-83, 2011.

N. Fukuta, S. Fujioka, S. Takatsuto, S. Yoshida, Y. Fukuta et al., Rinrei', a brassinosteroid-deficient dwarf mutant of faba bean (Vicia faba), Physiol Plant, vol.121, pp.506-518, 2004.

Z. F. Li, Y. Guo, L. Ou, H. L. Hong, J. Wang et al., Identification of the dwarf gene GmDW1 in soybean (Glycine max L.) by combining mapping-by-sequencing and linkage analysis, Theor Appl Genet, vol.131, pp.1001-1017, 2018.

S. J. Lawit, H. M. Wych, D. P. Xu, S. Kundu, and D. T. Tomes, Maize DELLA proteins dwarf plant8 and dwarf plant9 as modulators of plant development, Plant Cell Physiol, vol.51, pp.1854-68, 2010.

F. Jiang, M. Guo, F. Yang, K. Duncan, D. Jackson et al., Mutations in an AP2 transcription factor-like gene affect internode length and leaf shape in maize, PLoS One, 2012.

M. Lopez-vernaza, S. X. Yang, R. Muller, F. Thorpe, E. De-leau et al., Antagonistic roles of SEPALLATA3, FT and FLC genes as targets of the Polycomb group gene CURLY LEAF, PLoS One, 2012.

J. Goodrich, P. Puangsomlee, M. Martin, D. Long, E. M. Meyerowitz et al., A polycomb-group gene regulates homeotic gene expression in Arabidopsis, Nature, vol.386, pp.44-51, 1997.

C. Gomez-mena, S. De-folter, M. Costa, G. C. Angenent, and R. Sablowski, Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis, Development, vol.132, pp.429-467, 2005.

R. Almada, N. Cabrera, J. A. Casaretto, H. Pena-cortes, S. Ruiz-lara et al., Epigenetic repressor-like genes are differentially regulated during grapevine (Vitis vinifera L.) development, Plant Cell Rep, vol.30, pp.1959-68, 2011.

P. E. Dowd and S. Gilroy, The emerging roles of phospholipase C in plant growth and development, Lipid Signal Plants Plant Cell Monogr, vol.16, pp.23-37, 2010.

A. Sadanandom, M. Bailey, E. R. Lee, J. Nelis, and S. , The ubiquitin-proteasome system: central modifier of plant signalling, New Phytol, vol.196, pp.13-28, 2012.

X. H. Yang, U. C. Kalluri, S. Jawdy, L. E. Gunter, T. M. Yin et al., The F-box gene family is expanded in herbaceous annual plants relative to Woody perennial plants, Plant Physiol, vol.148, pp.1189-200, 2008.

M. Kumar, L. Campbell, and S. Turner, Secondary cell walls: biosynthesis and manipulation, J Exp Bot, vol.67, pp.515-546, 2016.

C. T. Do, B. Pollet, J. Thevenin, R. Sibout, D. Denoue et al., Both caffeoyl coenzyme a 3-O-methyltransferase 1 and caffeic acid Omethyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis, Planta, vol.226, pp.1117-1146, 2007.

R. Q. Zhong, W. H. Morrison, D. S. Himmelsbach, F. L. Poole, and Z. H. Ye, Essential role of caffeoyl coenzyme a O-methyltransferase in lignin biosynthesis in woody poplar plants, Plant Physiol, vol.124, pp.563-77, 2000.

R. Vanholme, V. Storme, B. Vanholme, L. Sundin, J. H. Christensen et al., A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis, Plant Cell, vol.24, pp.3506-3535, 2012.

W. Hu and H. Ma, Characterization of a novel putative zinc finger gene MIF1: involvement in multiple hormonal regulation of Arabidopsis development, Plant J, vol.45, pp.399-422, 2006.

W. Hu, B. M. Feng, and H. Ma, Ectopic expression of the Arabidopsis MINI ZINC FINGER1 and MIF3 genes induces shoot meristems on leaf margins, Plant Mol Biol, vol.76, pp.57-68, 2011.

N. Girollet, B. Rubio, C. Lopez-roques, S. Valière, N. Ollat et al., De novo phased assembly of the Vitis riparia grape genome, Sci Data, vol.6, p.127, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02627585

S. Myles, A. R. Boyko, C. L. Owens, P. J. Brown, F. Grassi et al., Genetic structure and domestication history of the grape, Proc Natl Acad Sci U S A, vol.108, pp.3530-3535, 2011.

J. Robinson, J. Harding, and J. Vouillamoz, Wine grapes. A complete guide to 1,368 vine varieties, including their origin and flavours. London: Penguin Books Ltd, 2012.

T. Lacombe, J. M. Boursiquot, V. Laucou, D. Vecchi-staraz, M. Peros et al., Large-scale parentage analysis in an extended set of grapevine cultivars (Vitis vinifera L.), Theor Appl Genet, vol.126, pp.401-415, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01268001

M. Sahebi, M. M. Hanafi, A. J. Van-wijnen, D. Rice, M. Y. Raffi et al., Contribution of transposable elements in the plant's genome, Gene, vol.665, pp.155-66, 2018.

S. Mehrotra and V. Goyal, Repetitive sequences in plant nuclear DNA: types, distribution, evolution and function, Genomics Proteomics Bioinform, vol.12, pp.164-71, 2014.

M. A. Garrido-ramos, Satellite DNA in Plants: More than Just Rubbish, Cytogenet Genome Res, vol.146, pp.153-70, 2015.

S. Guillaumie, A. Ilg, S. Rety, M. Brette, C. Trossat-magnin et al., Genetic analysis of the biosynthesis of 2-Methoxy-3-Isobutylpyrazine, a major grape-derived aroma compound impacting wine quality, Plant Physiol, vol.162, pp.604-619, 2013.

S. De-givry, M. Bouchez, P. Chabrier, D. Milan, and T. Schiex, CARTHAGENE: multipopulation integrated genetic and radiation hybrid mapping, Bioinformatics, vol.21, pp.1703-1707, 2005.

P. Stam, Construction of integrated genetic-linkage maps by means of a new computer package -JoinMap, Plant J, vol.3, pp.739-783, 1993.

. R-core-team, R: A language and environment for statistical computing, R Foundation for Statistical Computing. 2017, 2017.

A. Rebai, Comparison of methods for regression interval mapping in QTL analysis with non-normal traits, Genet Res, vol.69, pp.69-74, 1997.

J. W. Van-ooijen, M. P. Boer, R. C. Jansen, and C. A. Maliepaard, MapQTL 4.0: Software for the calculation of QTL positions on genetic maps (user manual), 2000.

S. J. Cookson and N. Ollat, Grafting with rootstocks induces extensive transcriptional re-programming in the shoot apical meristem of grapevine, BMC Plant Biol, vol.13, p.147, 2013.

G. K. Smyth, R. Gentleman, V. Carey, S. Dudoit, R. Irizarry et al., Limma: linear models for microarray data, Bioinformatics and Computational Biology Solutions using R and Bioconductor, pp.397-420, 2005.

C. Ramakers, J. M. Ruijter, R. Deprez, and A. Moorman, Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data, Neurosci Lett, vol.339, pp.62-68, 2003.

D. Lamoureux, A. Bernole, L. Clainche, I. Tual, S. Thareau et al., Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome, Theor Appl Genet, vol.113, pp.344-56, 2006.
URL : https://hal.archives-ouvertes.fr/inria-00180148

A. A. Santos, H. A. Penha, A. Bellec, M. Cdf, A. Pedrosa-harand et al., Begin at the beginning: a BAC-end view of the passion fruit (Passiflora) genome, BMC Genomics, vol.15, p.816, 2014.

C. S. Chin, D. H. Alexander, P. Marks, A. A. Klammer, J. Drake et al., Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data, Nat Methods, vol.10, pp.563-572, 2013.

M. J. Chaisson and G. Tesler, Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory, BMC Bioinform, vol.13, p.238, 2012.

A. Canaguier, J. Grimplet, D. Gaspero, G. Scalabrin, S. Duchene et al., A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3), Genomics Data, vol.14, pp.56-62, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01619926

G. Marcais, A. L. Delcher, A. M. Phillippy, R. Coston, S. L. Salzberg et al., MUMmer4: A fast and versatile genome alignment system, PLoS Comput Biol, 2018.

, Publisher's Note

, Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations