BACKGROUND AND AIMS: Isolated populations constitute an ideal laboratory to study the consequences of intra-specific divergence, considering that intrinsic incompatibilities are more likely to accumulate under reduced gene flow. Here, we use a widespread bromeliad with a patchy distribution, Pitcairnia lanuginosa Ruiz & Pav, as a model to infer processes driving Neotropical diversification and, thus, to improve our understanding on the origin and evolutionary dynamics of biodiversity in this highly speciose region. METHODS: We assessed timing of lineage divergence, genetic structure patterns, and historical demography of P. lanuginosa, based on microsatellites, plastid and nuclear sequence data sets using coalescent analyses and an Approximate Bayesian Computation framework. Additionally, we used species distribution models (SDMs) to independently estimate potential changes in habitat suitability. KEY RESULTS: Despite the morphological uniformity, plastid and nuclear DNA data revealed two distinct P. lanuginosa lineages that have likely diverged through dispersal from the Cerrado to the Central Andean Yungas, following the final uplift of the Andes, and passed through long-term isolation with no evidence of migration. Microsatellite data pointed to low genetic diversity and high levels of inbreeding within populations, and restricted gene flow among populations, which are likely consequence of bottlenecks (or founder events), and high selfing rates promoting population persistence in isolation. SDMs showed a slight expansion of suitable range for P. lanuginosa lineages during the Last Glacial Maximum, however, molecular data harbored a signature of older divergence. Pleistocene climatic oscillations thus seem to have played only a minor role on the diversification of P. lanuginosa, which probably persisted through adverse conditions in riparian forests. CONCLUSIONS: Our results imply drift as a major force shaping the evolution of P. lanuginosa, and suggest that dispersal events have a prominent role in connecting Neotropical open and forest biomes.