Does your gene need a background check? How genetic background impacts the analysis of mutations, genes, and evolution, Trends Genet, vol.29, pp.358-366, 2013. ,
How well do you know your mutation? Complex effects of genetic background on expressivity, complementation, and ordering of allelic effects, PLoS Genet, vol.13, 2017. ,
The Arabidopsis proteasome RPT5 subunits are essential for gametophyte development and show accession-dependent redundancy, Plant Cell, vol.21, pp.442-459, 2009. ,
Back into the wild-Apply untapped genetic diversity of wild relatives for crop improvement, Evol. Appl, vol.10, pp.5-24, 2017. ,
Genomics of crop wild relatives: Expanding the gene pool for crop improvement, Plant Biotechnol. J, vol.14, pp.1070-1085, 2016. ,
Genomic analyses provide insights into the history of tomato breeding, Nat. Genet, vol.46, pp.1220-1226, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02639866
Rewiring of the Fruit Metabolome in Tomato Breeding, Cell, vol.172, pp.249-261, 2018. ,
Navigating complexity to breed disease-resistant crops, Nat. Rev. Genet, vol.19, pp.21-33, 2018. ,
Quantitative Resistance to Plant Pathogens in Pyramiding Strategies for Durable Crop Protection, Front. Plant Sci, vol.8, 1838. ,
URL : https://hal.archives-ouvertes.fr/hal-01905321
, Int. J. Mol. Sci, vol.19, 2018.
Durable resistance: Definition of, genetic control, and attainment in plant breeding, Phytopathology, vol.71, pp.567-568, 1981. ,
Key determinants of resistance durability to plant viruses: insights from a model linking within-and between-host dynamics, Virus Res, vol.141, pp.140-149, 2009. ,
Genetic background matters: a plant-virus gene-for-gene interaction is strongly influenced by genetic contexts, Mol. Plant Pathol, vol.12, pp.911-920, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01462654
Key mutations in the cylindrical inclusion involved in lettuce mosaic virus adaptation to eIF4E-mediated resistance in lettuce, Mol. Plant Microbe Interact, vol.27, pp.1014-1024, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02632897
Spicing Up the N Gene: F. O. Holmes and Tobacco mosaic virus Resistance in Capsicum and Nicotiana Plants, Phytopathology, vol.107, pp.148-157, 2017. ,
Inheritance of resistance to tobacco-mosaic disease in tobacco, Phytopathology, vol.28, pp.553-561, 1938. ,
Allelic relationships between genes for resistance to tomato spotted wilt tospovirus in Capsicum chinense, Theor. Appl. Genet, vol.90, pp.146-149, 1995. ,
Hypersensitive resistance to tomato spotted wilt virus in three Capsicum chinense accessions is controlled by a single gene and is overcome by virulent strains, Euphytica, vol.94, pp.45-52, 1997. ,
Fine mapping of RYMV3: A new resistance gene to Rice yellow mottle virus from Oryza glaberrima, Theor. Appl. Genet, vol.130, pp.807-818, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01522297
Allelic variation at the rpv1 locus controls partial resistance to Plum pox virus infection in Arabidopsis thaliana, BMC Plant Biol, vol.15, p.159, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01262384
Cloning of the Arabidopsis rwm1 gene for resistance to Watermelon mosaic virus points to a new function for natural virus resistance genes, Plant J, vol.79, pp.705-716, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02640977
Light-dependent hypersensitive response and resistance signaling against Turnip Crinkle Virus in Arabidopsis, Plant J, vol.45, pp.320-334, 2006. ,
Polygenic resistance of pepper to potyviruses consists of a combination of isolate-specific and broad-spectrum quantitative trait loci, Mol. Plant. Microbe Interact, vol.10, pp.872-878, 1997. ,
Both common and specific genetic factors are involved in polygenic resistance of pepper to several potyviruses, Theor. Appl. Genet, vol.92, pp.15-20, 1996. ,
QTLs for a component of partial resistance to cucumber mosaic virus in pepper: restriction of virus installation in host cells, Theor. Appl. Genet, vol.94, pp.431-438, 1997. ,
QTLs involved in the restriction of cucumber mosaic virus (CMV) long-distance movement in pepper, Theor. Appl. Genet, vol.104, pp.586-591, 2002. ,
Quantitative trait loci from the host genetic background modulate the durability of a resistance gene: A rational basis for sustainable resistance breeding in plants, Heredity, vol.112, pp.579-587, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02630950
Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation, J. Gen. Virol, vol.98, 1923. ,
URL : https://hal.archives-ouvertes.fr/hal-01571391
QTL mapping of BNYVV resistance from the WB258 source in sugar beet, Plant Breed, vol.127, pp.650-652, 2008. ,
The complex resistance to cucumber mosaic cucumovirus (CMV) in the melon accession PI161375 is governed by one gene and at least two quantitative trait loci, Mol. Breed, vol.34, pp.351-362, 2014. ,
, Int. J. Mol. Sci, vol.19, 2018.
Identification of quantitative trait loci controlling resistance to maize chlorotic dwarf virus, Theor. Appl. Genet, vol.110, pp.48-57, 2004. ,
QTL analysis of resistance to sharka disease in the apricot (Prunus armeniaca L.) Polonais' x 'Stark Early Orange' F1 progeny, Tree Genet. Genomes, vol.3, pp.299-309, 2007. ,
Generation and molecular mapping of a sequence characterized amplified region marker linked with the Bct gene for resistance to Beet curly top virus in common bean, Phytopathology, vol.94, pp.320-325, 2004. ,
Family-based linkage and association mapping reveals novel genes affecting Plum pox virus infection in Arabidopsis thaliana, New Phytol, vol.196, pp.873-886, 2012. ,
Resistance to tomato leaf curl New Delhi virus in melon is controlled by a major QTL located in chromosome 11, Plant Cell Rep, vol.36, pp.1571-1584, 2017. ,
Quantitative trait loci mapping of resistance to sugarcane mosaic virus in maize, Phytopathology, vol.89, pp.660-667, 1999. ,
Molecular mapping of genomic regions underlying barley yellow dwarf tolerance in cultivated oat (Avena sativa L.), Theor. Appl. Genet, vol.106, pp.1300-1306, 2003. ,
Mapping and validation of quantitative trait loci associated with wheat yellow mosaic bymovirus resistance in bread wheat, Theor. Appl. Genet, vol.124, pp.177-188, 2012. ,
A natural recessive resistance gene against Potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E (eIF4E), Plant J, vol.32, pp.1067-1075, 2002. ,
Simultaneous mutations in translation initiation factors eIF4E and eIF(iso)4E are required to prevent pepper veinal mottle virus infection of pepper, J. Gen. Virol, vol.87, pp.2089-2098, 2006. ,
The plant immune system, Nature, vol.444, pp.323-329, 2006. ,
Dominant resistance against plant viruses. Front, Plant Sci, vol.5, p.307, 2014. ,
Sources of natural resistance to plant viruses: Status and prospects, Mol. Plant Pathol, vol.8, pp.223-231, 2007. ,
The Rx Gene Confers Resistance to a Range of Potexviruses in Transgenic Nicotiana Plants, Mol. Plant Microbe Interact, vol.21, pp.1154-1164, 2008. ,
Transfer and modification of NLR proteins for virus resistance in plants, Curr. Opin. Virol, vol.26, pp.43-48, 2017. ,
How do plants achieve immunity? Defence without specialized immune cells, Nat. Rev. Immunol, vol.12, pp.89-100, 2012. ,
Experimental adaptation of an RNA virus mimics natural evolution, J. Virol, vol.85, pp.2557-2564, 2011. ,
Amino acid substitution in P3 of Soybean mosaic virus to convert avirulence to virulence on Rsv4-genotype soybean is influenced by the genetic composition of P3, Mol. Plant Pathol, vol.16, pp.301-307, 2015. ,
The HC-Pro and P3 cistrons of an avirulent Soybean mosaic virus are recognized by different resistance genes at the complex Rsv1 locus, Mol. Plant Microbe Interact, vol.26, pp.203-215, 2013. ,
Mixed infections of Pepino mosaic virus strains modulate the evolutionary dynamics of this emergent virus, J. Virol, vol.83, pp.12378-12387, 2009. ,
Trade-Offs for Viruses in Overcoming Innate Immunities in Plants, Mol. Plant Microbe Interact, vol.29, pp.595-598, 2016. ,
García-Arenal, F. Evolution and Emergence of Plant Viruses, Adv. Virus Res, vol.88, pp.161-191, 2014. ,
, Int. J. Mol. Sci, vol.19, 2018.
An analysis of the durability of resistance to plant viruses, Phytopathology, vol.93, pp.941-952, 2003. ,
Virus variation in relation to resistance-breaking in plants, Euphytica, vol.124, pp.181-192, 2002. ,
Durable virus resistance in plants through conventional approaches: A challenge, Virus Res, vol.100, pp.31-39, 2004. ,
The Coevolution of Plants and Viruses, Adv. Virus Res, vol.76, pp.1-32, 2010. ,
Host membrane proteins involved in the replication of tobamovirus RNA, Curr. Opin. Virol, vol.2, pp.699-704, 2012. ,
A fitness cost for Turnip mosaic virus to overcome host resistance, Virus Res, vol.86, pp.1-6, 2002. ,
Constraints on evolution of virus avirulence factors predict the durability of corresponding plant resistances, Mol. Plant Pathol, vol.10, pp.599-610, 2009. ,
Evidence for different, host-dependent functioning of Rx against both wild-type and recombinant Pepino mosaic virus: Rx-mediated resistance against PepMV, Mol. Plant Pathol, vol.17, pp.120-126, 2016. ,
Exploring the mechanism and efficient use of a durable gene-mediated resistance to bacterial blight disease in rice, Mol. Breed, vol.38, 2018. ,
Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice, Theor. Appl. Genet, vol.120, pp.127-138, 2009. ,
The plant genetic background affects the efficiency of the pepper major nematode resistance genes Me1 and Me3, Theor. Appl. Genet, vol.127, pp.499-507, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02630683
Regulation of plant immune receptor accumulation through translational repression by a glycine-tyrosine-phenylalanine (GYF) domain protein, vol.6, 2017. ,
AtCDC48A is involved in the turnover of an NLR immune receptor, Plant J, vol.88, pp.294-305, 2016. ,
Ubiquitination in NB-LRR-mediated immunity, Curr. Opin. Plant Biol, vol.15, pp.392-399, 2012. ,
The highly buffered Arabidopsis immune signaling network conceals the functions of its components, PLoS Genet, vol.13, 2017. ,
The fog of war: How network buffering protects plants' defense secrets from pathogens, PLoS Genet, vol.13, 2017. ,
Epigenetic Mechanisms: An Emerging Player in Plant-Microbe Interactions, Mol. Plant Microbe Interact, vol.29, pp.187-196, 2016. ,
Plant Nucleotide Binding Site-Leucine-Rich Repeat (NBS-LRR) Genes: Active Guardians in Host Defense Responses, Int. J. Mol. Sci, vol.14, pp.7302-7326, 2013. ,
Autoimmunity in Arabidopsis acd11 Is Mediated by Epigenetic Regulation of an Immune Receptor, PLoS Pathog, vol.6, 2010. ,
A Cluster of Disease Resistance Genes in Arabidopsis Is Coordinately Regulated by Transcriptional Activation and RNA Silencing, Plant Cell, vol.19, pp.2929-2939, 2007. ,
Epigenetic Regulation in Plant Responses to the Environment, Cold Spring Harb. Perspect. Biol, 2014. ,
Recent Advances in Plant-Virus Interaction with Emphasis on Small Interfering RNAs (siRNAs), Mol. Biotechnol, vol.55, pp.63-77, 2013. ,
Enhanced viral intergenic region-specific short interfering RNA accumulation and DNA methylation correlates with resistance against a Geminivirus, Mol. Plant Microbe Interact, vol.24, pp.1189-1197, 2011. ,
, Int. J. Mol. Sci, 2018.
DNA methylation polymorphism in flue-cured tobacco and candidate markers for tobacco mosaic virus resistance, J. Zhejiang Univ. Sci. B, vol.12, pp.935-942, 2011. ,
A possible role of CTV.20 gene methylation in response to Citrus tristeza virus infection, Eur. J. Plant Pathol, vol.150, pp.527-532, 2018. ,
Susceptibility genes 101: How to be a good host, Annu. Rev. Phytopathol, vol.52, pp.551-581, 2014. ,
The Eukaryotic Translation Initiation Factor 4E Controls Lettuce Susceptibility to the Potyvirus Lettuce mosaic virus, Plant Physiol, vol.132, pp.1272-1282, 2003. ,
Eukaryotic translation initiation factor 4E-mediated recessive resistance to plant viruses and its utility in crop improvement: eIF4E-mediated resistance to plant viruses, Mol. Plant Pathol, vol.13, pp.795-803, 2012. ,
Plant Translation Factors and Virus Resistance, Viruses, vol.7, pp.3392-3419, 2015. ,
Recessive Resistance to Plant Viruses: Potential Resistance Genes Beyond Translation Initiation Factors, Front. Microbiol, vol.7, 2016. ,
Simultaneous CRISPR/Cas9-mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 reduces cassava brown streak disease symptom severity and incidence, Plant Biotechnol. J, 2018. ,
Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus, Plant Biotechnol. J, 2018. ,
Development of broad virus resistance in non-transgenic cucumber using CRISPR/Cas9 technology, Mol. Plant Pathol, vol.17, pp.1140-1153, 2016. ,
Trans-species synthetic gene design allows resistance pyramiding and broad-spectrum engineering of virus resistance in plants, Plant Biotechnol. J, vol.16, pp.1569-1581, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01852177
Multiple copies of eukaryotic translation initiation factors in Brassica rapa facilitate redundancy, enabling diversification through variation in splicing and broad-spectrum virus resistance, Plant J, vol.77, pp.261-268, 2014. ,
Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg, Plant J, vol.54, pp.56-68, 2008. ,
Mutation of a Nicotiana tabacum L. eukaryotic translation-initiation factor gene reduces susceptibility to a resistance-breaking strain of Potato Virus ?, Mol. Plant Pathol, vol.19, pp.2124-2133, 2018. ,
Single amino acid changes in the turnip mosaic virus viral genome-linked protein (VPg) confer virulence towards Arabidopsis thaliana mutants knocked out for eukaryotic initiation factors eIF(iso)4E and eIF(iso)4G, J. Gen. Virol, vol.91, pp.288-293, 2010. ,
Natural Variation Should Guide Gene Editing, Trends Plant Sci, vol.22, pp.411-419, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01595311
The Arabidopsis eukaryotic initiation factor (iso)4E is dispensable for plant growth but required for susceptibility to potyviruses, Plant J, vol.32, pp.927-934, 2002. ,
DNA-binding protein phosphatase AtDBP1 mediates susceptibility to two potyviruses in Arabidopsis, Plant Physiol, vol.153, pp.1521-1525, 2010. ,
, Int. J. Mol. Sci, vol.19, 2018.
A TILLING approach to generate broad-spectrum resistance to potyviruses in tomato is hampered by eIF4E gene redundancy, Plant J, vol.85, pp.717-729, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01314164
EXA1, a GYF domain protein, is responsible for loss-of-susceptibility to plantago asiatica mosaic virus in iArabidopsis thaliana, Plant J, vol.88, pp.120-131, 2016. ,
Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies, New Phytol, vol.183, pp.190-199, 2009. ,
Selection of nematodes by resistant plants has implications for local adaptation and cross-virulence, Plant Pathol, vol.62, pp.184-193, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01208639
Quantitative resistance increases the durability of qualitative resistance to Leptosphaeria maculans in Brassica napus, New Phytol, vol.185, pp.285-299, 2010. ,
Farther, slower, stronger: How the plant genetic background protects a major resistance gene from breakdown: Mechanisms of polygenic resistance durability, Mol. Plant Pathol, vol.14, pp.109-118, 2013. ,
Analysis of a core collection of pepper landraces resistant to Potato virus Y: Genetic backgrounds shape R-gene durability, Mol. Plant Pathol, vol.17, pp.296-302, 2016. ,
Complementary functions of two recessive R-genes determine resistance durability of tobacco 'Virgin A Mutant' (VAM) to Potato virus Y, Virology, vol.379, pp.275-283, 2008. ,
Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants, Mol. Plant Pathol ,
URL : https://hal.archives-ouvertes.fr/hal-01953902
Variability and genetic structure of plant virus populations, Annu. Rev. Phytopathol, vol.39, pp.157-186, 2001. ,
The evolutionary genetics of emerging plant RNA viruses, Mol. Plant Microbe Interact, vol.24, pp.287-293, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02644252
P3N-PIPO, a Frameshift Product from the P3 Gene, Pleiotropically Determines the Virulence of Clover Yellow Vein Virus in both Resistant and Susceptible Peas, J. Virol, vol.90, pp.7388-7404, 2016. ,
Genetic diversity in RNA Virus quasispecies is controlled by Host-Virus interactions, J. Virol, vol.75, pp.6566-6571, 2001. ,
The evolutionary history of Beet necrotic yellow vein virus deduced from genetic variation, geographical origin and spread, and the breaking of host resistance, Mol. Plant Microbe Interact, vol.24, pp.207-218, 2011. ,
Begomovirus genetic diversity in the native plant reservoir Solanum nigrum: Evidence for the presence of a new virus species of recombinant nature, Virology, vol.350, pp.433-442, 2006. ,
The Combined Effect of Environmental and Host Factors on the Emergence of Viral RNA Recombinants, PLoS Pathog, vol.6, 2010. ,
Using genomic analysis to identify tomato Tm-2 resistance-breaking mutations and their underlying evolutionary path in a new and emerging tobamovirus, Arch. Virol, vol.163, pp.1863-1875, 2018. ,
, Int. J. Mol. Sci, vol.19, 2018.
García-Arenal, F. Mutations That Determine Resistance Breaking in a Plant RNA Virus Have Pleiotropic Effects on Its Fitness That Depend on the Host Environment and on the Type, Single or Mixed, of Infection, J. Virol, vol.90, pp.9128-9137, 2016. ,
Estimating virus effective population size and selection without neutral markers, PLoS Pathog, vol.13, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01658535
, This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license, © 2018 by the authors. Licensee MDPI