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The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics

Valentin Guignon 1 yann Hueber 2 Mathieu Rouard 2 Stéphanie Bocs 3, 4 David Couvin 3 Frederic de Lamotte 3 Gaëtan Droc 3, 4 Jean-François Dufayard 3, 4 Nordine El Hassouni 3 Cédric Farcy 3 Anestis Gkanogiannis 3, 4 Chantal Hamelin 3, 4 Delphine Larivière 3 Guillaume Martin 3 Enrique Ortega 3 Bertrand Pitollat 3, 4 Stéphanie Pointet 3 Manuel Ruiz 3 Gautier Sarah 3 Marilyne Summo 3 Dominique This 3, 5 Sébastien Ravel 6, 4 Pierre Larmande 7 Cécile Monat 7 Francois Sabot 7 Ndomassi Tando 7 Christine Tranchant-Dubreuil 7 Guilhem Sempere 8 Alexis Dereeper 9 
1 Bioversity International [Montpellier]
2 Biodiversity International
3 UMR AGAP - Amélioration génétique et adaptation des plantes méditerranéennes et tropicales
4 Cirad - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
5 Montpellier SupAgro - Institut national d’études supérieures agronomiques de Montpellier
6 UMR BGPI - Biologie et Génétique des Interactions Plante-Parasite
7 UMR DIADE - Diversité, adaptation, développement des plantes
8 UMR INTERTRYP - Interactions hôtes-vecteurs-parasites-environnement dans les maladies tropicales négligées dues aux trypanosomatides
9 UMR IPME - UMR - Interactions Plantes Microorganismes Environnement
Abstract : The South Green Web portal (http://www.southgreen.fr/http://www.southgreen.fr/) provides access to a large panel of public databases, analytical workflows and bioinformatics resources dedicated to the genomics of tropical and Mediterranean crops. The portal contains currently about 20 information systems and tools and targets a broad range of crops such as Banana, Cacao, Cassava, Coconut, Coffee, Grape, Rice and Sugarcane.
Keywords : crop databases next Generation Sequencing pipeline workflow
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IRD | CIRAD | CNRS | UNIV-LYON1 | INRA | AGROPOLIS | BA | UNIV-MONTPELLIER | MONTPELLIER-SUPAGRO | UDL | INRAE | INRAEOCCITANIEMONTPELLIER | AGAP

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Valentin Guignon, yann Hueber, Mathieu Rouard, Stéphanie Bocs, David Couvin, et al.. The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology, Elsevier, 2016, 7-8, pp.6-9. ⟨10.1016/j.cpb.2016.12.002⟩. ⟨hal-02631148⟩

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