Vanilla-its botany, history, cultivation and economic import, Econ Bot, vol.7, issue.4, pp.291-358, 1953. ,
Vanilla flavour: production by conventional and biotechnological routes, J Sci Food Agric, vol.80, issue.3, pp.289-304, 2000. ,
, J. Robbins 'Spices'. Exp Agric, vol.18, p.330, 1982.
Vanillin Biosynthesis-not as Simple as it Seems, Handbook of Vanilla Science and Technology, vol.2011, pp.292-298 ,
A polymer of caffeyl alcohol in plant seeds, Proc Natl Acad Sci, vol.109, pp.1772-1777, 2012. ,
, Natural polyploidy in Vanilla planifolia (Orchidaceae)
URL : https://hal.archives-ouvertes.fr/hal-00856119
, Genome, vol.51, issue.10, pp.816-826, 2008.
Applications of next-generation sequencing technologies -the next generation, Nat Rev Gene, vol.2010, issue.1, pp.31-46 ,
Comparison of next generation sequencing technologies for transcriptome characterization, BMC Genomics, vol.10, p.347, 2009. ,
De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome, Plant Cell Physiol, vol.52, issue.9, pp.1501-1514, 2011. ,
Comparison of next-generation sequencing systems, J Biomed Biotechnol, p.251364, 2012. ,
Computational methods for transcriptome annotation and quantification using RNA-seq, Nat Methods, vol.8, issue.6, pp.469-477, 2011. ,
Havkin-Frenkel D: A hairy tissue produces vanillin, Israel J Plant Sci, vol.51, pp.157-159, 2003. ,
Anatomy, histochemistry and biochemistry ofr glucovanillin, oleoresin and mucilage accumualtion sites in green mature vanilla pod (Vanilla planifolia; Orchidaceae): a comprehensive and critical reexamination, Fruits, vol.64, pp.1-21, 2009. ,
Velvet: algorithms for de novo short read assembly using de Bruijn graphs, Genome Res, vol.18, issue.5, pp.821-829, 2008. ,
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels, Bioinformatics, vol.2012, issue.8, pp.1086-1092 ,
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs, Genome Res, vol.14, issue.6, pp.1147-1159, 2004. ,
Genome sequence assembly using trace signals and additional sequence information, Proc. German Conference on Bioinformatics GCB'99, pp.45-56, 1999. ,
Assembly algorithms for next-generation sequencing data, Genomics, vol.2010, issue.6, pp.315-327 ,
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome, Genome Biol, vol.10, issue.3, p.25, 2009. ,
Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.), Plant J, vol.74, issue.1, pp.160-173, 2013. ,
A gene expression atlas of the model legume Medicago truncatula, Plant J, vol.55, issue.3, pp.504-513, 2008. ,
Expression profiles of key phenylpropanoid genes during Vanilla planifolia pod development reveal a positive correlation between PAL gene expression and vanillin biosynthesis, Plant Physiol Biochem, vol.74, pp.304-314, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01403671
rsgcc: Gini Methodology-Based Correlation and Clustering Analysis of Microarray and RNA-Seq Gene Expression Data, 2013. ,
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium, Nat Genet, vol.25, issue.1, pp.25-29, 2000. ,
KEGG: Kyoto encyclopedia of genes and genomes, Nucleic Acids Res, vol.28, issue.1, pp.27-30, 2000. ,
Data, information, knowledge and principle: back to metabolism in KEGG, Nucleic Acids Res, vol.42, pp.199-205, 2014. ,
A gene expression map of Arabidopsis thaliana development, Nat Genet, vol.37, issue.5, pp.501-506, 2005. ,
Evolution of novel O-methyltransferases from the Vanilla planifolia caffeic acid O-methyltransferase, Plant Mol Biol, vol.61, issue.3, pp.537-552, 2006. ,
Characterization of a multifunctional methyltransferase from the orchid Vanilla planifolia, Plant Cell Rep, vol.22, issue.12, pp.959-966, 2004. ,
Functional characterization of two new members of the caffeoyl CoA O-methyltransferase-like gene family from Vanilla planifolia reveals a new class of plastid-localized O-methyltransferases, Plant Mol Biol, vol.76, issue.6, pp.475-488, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02652795
Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis, Science, vol.2013, issue.6150, pp.1103-1106 ,
Coexistence but independent biosynthesis of catechyl and guaiacyl/syringyl lignin polymers in seed coats, Plant Cell, vol.25, issue.7, pp.2587-2600, 2013. ,
Interrelation of curing and botany in vanilla (Vanilla planifolia) bean, Acta Hort, vol.629, pp.93-102, 2004. ,
R Foundation for Statistical Computing, R: A Language and Environment for Statistical Computing, 2013. ,
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research, Bioinformatics, vol.21, issue.18, pp.3674-3676, 2005. ,
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis, Plant Physiol, vol.139, issue.1, pp.5-17, 2005. ,
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data, Neurosci Lett, vol.339, issue.1, pp.62-66, 2003. ,
, Pfaffl MW: A new mathematical model for relative quantification in real-time RT-PCR, vol.29, 2001.
Submit your next manuscript to BioMed Central and take full advantage of: ? Convenient online submission ? Thorough peer review ? No space constraints or color figure charges ? Immediate publication on acceptance ? Inclusion in PubMed, CAS, Scopus and Google Scholar ? Research which is freely available for redistribution, BMC Genomics, vol.15, p.964, 2014. ,