Basic local alignment search tool, J Mol Biol, vol.215, pp.403-410, 1990. ,
The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs, BMC Genomics, vol.12, p.606, 2011. ,
LINE-1 elements in structural variation and disease, Annu Rev Genomics Hum Genet, vol.12, pp.187-215, 2011. ,
Dispersal and survival of Aedes albopictus (Diptera: Culicidae) males in Italian urban areas and significance for sterile insect technique application, J Med Entomol, vol.47, pp.1082-1091, 2010. ,
Non-LTR retrotransposons in the African malaria mosquito, Anopheles gambiae: unprecedented diversity and evidence of recent activity, Mol Biol Evol, vol.20, pp.1811-1825, 2003. ,
, , 2004.
, J Soc Biol, vol.198, pp.413-417
Breeding structure of a colonising species: Aedes albopictus (Skuse) in the United States, Heredity (Edinb), pp.173-181, 1988. ,
Genome evolution in mosquitoes: intraspecific and interspecific variation in repetitive DNA amounts and organization, Genet Res, vol.51, pp.185-196, 1988. ,
The invasive mosquito species Aedes albopictus: current knowledge and future perspectives, Trends Parasitol, vol.29, pp.460-468, 2013. ,
Transposable elements in mosquitoes, Cytogenet Genome Res, vol.110, pp.500-509, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02372563
Human impacts have shaped historical and recent evolution in Aedes aegypti, the dengue and yellow fever mosquito, Evolution, vol.68, pp.514-525, 2014. ,
The impact of transposable elements in environmental adaptation, Mol Ecol, vol.22, pp.1503-1517, 2013. ,
The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments, Gene, vol.509, pp.7-15, 2012. ,
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants, Nucleic Acids Res, vol.38, pp.1767-1771, 2010. ,
Retrotransposons revisited: the restraint and rehabilitation of parasites, Cell, vol.135, pp.23-35, 2008. ,
Full-length transcriptome assembly from RNA-Seq data without a reference genome, Nat. Biotechnol, vol.29, pp.644-652, 2011. ,
The biology of Aedes albopictus, J Am Mosq Control Assoc Suppl, vol.1, pp.1-39, 1988. ,
The genome sequence of the malaria mosquito Anopheles gambiae, Science, vol.298, pp.129-149, 2002. ,
CAP3: a DNA sequence assembly program, Genome Res, vol.9, pp.868-877, 1999. ,
Families of transposable elements, population structure and the origin of species, Biol Direct, vol.6, p.44, 2011. ,
Repbase Update, a database of eukaryotic repetitive elements, Cytogenet Genome Res, vol.110, pp.462-467, 2005. ,
Molecular paleontology of transposable elements in the Drosophila melanogaster genome, Proc Natl Acad Sci U S A, vol.100, pp.6569-6574, 2003. ,
RepARK-de novo creation of repeat libraries from whole-genome NGS reads, Nucleic Acids Res, vol.42, p.80, 2014. ,
Intraspecific variation in nuclear DNA content among world populations of a mosquito, Aedes albopictus, 1990. ,
, Theor Appl Genet, vol.79, pp.748-752
Fast gapped-read alignment with Bowtie 2, Nat Methods, vol.9, pp.357-359, 2012. ,
Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes, Gene, vol.473, pp.100-109, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00850380
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences, Bioinformatics, vol.22, pp.1658-1659, 2006. ,
Distinguishing ecological from evolutionary approaches to transposable elements, Biol Rev Camb Philos Soc, vol.88, pp.573-584, 2013. ,
The genome of Anopheles darlingi, the main neotropical malaria vector, Nucleic Acids Res, vol.41, pp.7387-7400, 2013. ,
Intraspecific and interspecific variation in the sequence and abundance of highly repeated DNA among mosquitoes of the Aedes albopictus subgroup, Heredity (Edinb), vol.58, pp.373-381, 1987. ,
Human-aided and natural dispersal drive gene flow across the range of an invasive mosquito, Mol Ecol, vol.24, pp.284-295, 2015. ,
Identification and analysis of transposable elements in genomic sequences, pp.165-181, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02099541
Phylogeography of Aedes (Stegomyia) aegypti (L.) and Aedes (Stegomyia) albopictus (Skuse) (Diptera: Culicidae) based on mitochondrial DNA variations, Genet Res, vol.86, pp.1-11, 2005. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01698720
Genome sequence of Aedes aegypti, a major arbovirus vector, Science, vol.316, pp.1718-1723, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00156214
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data, BMC Bioinformatics, vol.11, p.378, 2010. ,
Comparison of allozyme and morphological relationships in some Aedes (Stegomyia) mosquitoes (Diptera: Culicidae), Ann Entomol Soc Am, vol.76, pp.388-394, 1983. ,
Inter and intraspecific variation in nuclear DNA content in Aedes mosquitoes, Heredity (Edinb), vol.59, pp.253-258, 1987. ,
Jumping genes and epigenetics: towards new species, Gene, vol.454, pp.1-7, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00850384
Oviposition and dispersion of Aedes aegypti in an urban environment, 1996. ,
, Bull Soc Pathol Exot, vol.89, pp.120-122
The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements, Plant J, vol.72, pp.142-153, 2012. ,
GNU parallel: the command-line power tool. ;login USENIX Mag, vol.3, pp.42-47, 2011. ,
Structural, genomic, and phylogenetic analysis of Lian, a novel family of non-LTR retrotransposons in the yellow fever mosquito, Aedes aegypti, Mol Biol Evol, vol.15, pp.837-853, 1998. ,
A genome-wide survey of genetic instability by transposition in Drosophila hybrids, PLoS One, vol.9, p.88992, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01526703
Dynamics of transposable elements: towards a community ecology of the genome, Trends Genet, vol.25, pp.317-323, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00428403
A unified classification system for eukaryotic transposable elements, Nat Rev Genet, vol.8, pp.973-982, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00169819
Velvet: algorithms for de novo short read assembly using de Bruijn graphs, Genome Res, vol.18, pp.821-829, 2008. ,
Genome sequence of Anopheles sinensis provides insight into genetics basis of mosquito competence for malaria parasites, BMC Genomics, vol.15, p.42, 2014. ,
Tedna: a transposable element de novo assembler, Bioinformatics, vol.30, pp.2656-2658, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02630617