G. Bernasconi, J. Antonovics, A. Biere, D. Charlesworth, L. F. Delph et al., Silene as a model system in ecology and evolution, Heredity, vol.103, issue.1, pp.5-14, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00428347

R. Ming, A. Bendahmane, and S. S. Renner, Sex chromosomes in land plants, Annu Rev Plant Biol, vol.62, pp.485-514, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02652329

D. A. Filatov, Isolation of genes from plant Y chromosomes, Methods Enzymol, vol.395, pp.418-460, 2005.

R. Bergero, A. Forrest, E. Kamau, and D. Charlesworth, Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes, Genetics, vol.175, issue.4, pp.1945-54, 2007.

R. Bergero, S. Qiu, A. Forrest, H. Borthwick, and D. Charlesworth, Expansion of the pseudo-autosomal region and ongoing recombination suppression in the Silene latifolia sex chromosomes, Genetics, vol.194, issue.3, pp.673-86, 2013.

R. Bergero and D. Charlesworth, Preservation of the Y transcriptome in a 10-million-yearold plant sex chromosome system, Curr Biol, vol.21, issue.17, pp.1470-1474, 2011.

M. V. Chibalina and D. A. Filatov, Plant Y chromosome degeneration is retarded by haploid purifying selection, Curr Biol, vol.21, issue.17, pp.1475-1484, 2011.

A. Muyle, N. Zemp, C. Deschamps, S. Mousset, A. Widmer et al., Rapid de novo evolution of X chromosome dosage compensation in Silene latifolia, a plant with young sex chromosomes, PLoS Biol, vol.10, issue.4, p.1001308, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00698081

D. B. Sloan, S. R. Keller, A. E. Berardi, B. J. Sanderson, J. F. Karpovich et al., De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae), Mol Ecol Resour, vol.12, issue.2, pp.333-376, 2012.

K. Ishii, Y. Amanai, Y. Kazama, M. Ikeda, H. Kamada et al., Analysis of BAC clones containing homologous sequences on the end of the Xq arm and on chromosome 7 in the dioecious plant Silene latifolia, Genome, vol.53, issue.4, pp.311-331, 2010.

N. Blavet, H. Blavet, R. Cegan, N. Zemp, J. Zdanska et al., Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome, BMC Genomics, vol.13, p.226, 2012.

D. A. Filatov, Evolutionary history of Silene latifolia sex chromosomes revealed by genetic mapping of four genes, Genetics, vol.170, issue.2, pp.975-984, 2005.

R. Bergero, D. Charlesworth, D. A. Filatov, and R. C. Moore, Defining regions and rearrangements of the Silene latifolia Y chromosome, Genetics, vol.178, issue.4, pp.2045-53, 2008.

E. J. Pritham, Y. H. Zhang, C. Feschotte, and R. V. Kesseli, An Ac-like transposable element family with transcriptionally active Y-linked copies in the white campion Silene latifolia, Genetics, vol.165, issue.2, pp.799-807, 2003.

R. Hobza, M. Lengerova, J. Svoboda, H. Kubekova, E. Kejnovsky et al., An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution, Chromosoma, vol.115, issue.5, pp.376-82, 2006.

E. Kejnovsky, Z. Kubat, R. Hobza, M. Lengerova, S. Sato et al., Accumulation of chloroplast DNA sequences on the Y chromosome of Silene latifolia, Genetica, vol.128, issue.1-3, pp.167-75, 2006.

R. Hobza, E. Kejnovsky, B. Vyskot, and A. Widmer, The role of chromosomal rearrangements in the evolution of Silene latifolia sex chromosomes, Mol Genet Genomics, vol.278, issue.6, pp.633-641, 2007.

T. Cermak, Z. Kubat, R. Hobza, A. Koblizkova, A. Widmer et al., Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes, Chromosome Res, vol.16, issue.7, pp.961-76, 2008.

R. Bergero, A. Forrest, and D. Charlesworth, Active miniature transposons from a plant genome and its non-recombining Y chromosome, Genetics, vol.178, issue.2, pp.1085-92, 2008.

J. Macas, E. Kejnovsky, P. Neumann, P. Novak, A. Koblizkova et al., Next generation sequencing-based analysis of repetitive DNA in the model dioecious plant Silene latifolia, PLoS ONE, vol.6, issue.11, p.27335, 2011.

P. Steflova, R. Hobza, B. Vyskot, and E. Kejnovsky, Strong Accumulation of Chloroplast DNA in the Y Chromosomes of Rumex acetosa and Silene latifolia, Cytogenet Genome Res, vol.142, issue.1, pp.59-65, 2013.

E. Sykorova, J. Cartagena, M. Horakova, K. Fukui, and J. Fajkus, Characterization of telomere-subtelomere junctions in Silene latifolia, Mol Genet Genomics, vol.269, issue.1, pp.13-20, 2003.

I. Scotti and L. F. Delph, Selective trade-offs and sex-chromosome evolution in Silene latifolia, Evolution, vol.60, issue.9, pp.1793-800, 2006.
URL : https://hal.archives-ouvertes.fr/hal-01032044

S. Matsunaga, M. Hizume, S. Kawano, and T. Kuroiwa, Cytological analysis in Melandrium album: genome size, chromosome size and fluorescence in situ hybridization, Cytologia, vol.59, pp.135-176, 1994.

D. W. Bellott, J. F. Hughes, H. Skaletsky, L. G. Brown, T. Pyntikova et al., Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators, Nature, vol.508, issue.7497, pp.494-503, 2014.

D. Cortez, R. Marin, D. Toledo-flores, L. Froidevaux, A. Liechti et al., Origins and functional evolution of Y chromosomes across mammals, Nature, vol.508, issue.7497, pp.488-93, 2014.

D. S. Guttman and D. Charlesworth, An X-linked gene with a degenerate Y-linked homologue in a dioecious plant, Nature, vol.393, issue.6682, pp.263-269, 1998.

Y. Kazama, K. Nishihara, R. Bergero, M. T. Fujiwara, T. Abe et al., SlWUS1; an X-linked gene having no homologous Y-linked copy in Silene latifolia. G3 (Bethesda), vol.2, pp.1269-78, 2012.

S. Qiu, R. Bergero, S. Guirao-rico, J. L. Campos, T. Cezard et al., RAD-mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region, Molecular Ecology, 2015.

R. Cegan, G. A. Marais, H. Kubekova, N. Blavet, A. Widmer et al., Structure and evolution of Apetala3, a sex-linked gene in Silene latifolia, BMC Plant Biol, vol.10, p.180, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00539504

A. Gurevich, V. Saveliev, N. Vyahhi, and G. Tesler, QUAST: quality assessment tool for genome assemblies, Bioinformatics, vol.29, issue.8, pp.1072-1077, 2013.

A. E. Darling, B. Mau, and N. T. Perna, Submit your next manuscript to BioMed Central and take full advantage of: ? Convenient online submission ? Thorough peer review ? No space constraints or color figure charges ? Immediate publication on acceptance ? Inclusion in PubMed, CAS, Scopus and Google Scholar ? Research which is freely available for redistribution, PLoS ONE, vol.5, issue.6, 2010.