Seed banks and molecular maps: unlocking genetic potential from the wild. Science (80-), vol.277, pp.1063-1069, 1997. ,
The molecular genetics of crop domestication, Cell, vol.127, pp.1309-1330, 2006. ,
A comparison between crop domestication, classical plant breeding, and genetic engineering, Crop Sci, vol.42, p.1780, 2002. ,
Natural variation in Arabidopsis. How do we find the causal genes?, Plant Physiol, vol.138, pp.567-575, 2005. ,
Taxonomy of wild tomatoes and their relatives (Solanum sect. Lycopersicoides, sect. Juglandifolia, sect. Lycopersicon; Solanaceae), Syst Bot Monogr, vol.84, pp.1-186, 2008. ,
Allozyme variation in the cultivated tomato and closely related species, Bull Torrey Bot Club, vol.102, pp.376-84, 1975. ,
Classification and phylogenetic relationships in Solanum section Lycopersicon based on AFLP and two nuclear gene sequences, Genet Resour Crop Evol, vol.56, pp.663-78, 2008. ,
Genetic and bioclimatic variation in Solanum pimpinellifolium, Genet Resour Crop Evol, vol.56, pp.39-51, 2008. ,
Variation revealed by SNP genotyping and morphology provides insight into the origin of the tomato, PLoS One, vol.7, p.48198, 2012. ,
Natural variability in wild species of Lycopersicon and its bearing on tomato breeding, Genet Agrar, vol.30, pp.249-59, 1976. ,
Andean Lycopersicon esculentum var. cerasiforme: genetic variation and its evolutionary significance, Econ Bot, vol.44, pp.69-78, 1990. ,
Population structure, demographic history, and evolutionary patterns of a green-fruited tomato, Solanum peruvianum (Solanaceae), revealed by spatial genetics analyses, Am J Bot, vol.99, pp.1207-1223, 2012. ,
Cytogenetics of the Tomato, Advances in Genetics, vol.8, pp.267-382, 1956. ,
The origin of the cultivated tomato, Econ Bot, vol.2, pp.379-92, 1948. ,
Comparative sequencing in the genus lycopersicon: implications for the evolution of fruit size in the domestication of cultivated tomatoes, Genetics, vol.162, pp.365-79, 2002. ,
A clarified position for Solanum lycopersicum var cerasiforme in the evolutionary history of tomatoes (solanaceae), BMC Plant Biol, vol.8, p.130, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00489786
Origin of cultivated plants ,
RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon, Theor Appl Genet, vol.80, pp.437-485, 1990. ,
Phenetic relationships and levels of variability detected by restriction fragment length polymorphism and random amplified polymorphic DNA analysis of cultivated and wild accessions of Lycopersicon esculentum, Genome, vol.36, pp.619-649, 1993. ,
Evaluation of AFLPs for germplasm fingerprinting and assessment of genetic diversity in cultivars of tomato (Lycopersicon esculentum L) ,
, Genome, vol.47, pp.510-518, 2004.
Population structure and genetic differentiation associated with breeding history and selection in tomato (Solanum lycopersicum L.), Heredity (Edinb), vol.106, pp.927-962, 2011. ,
Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L) reveals patterns of SNP variation associated with breeding, BMC Genomics, vol.10, p.466, 2009. ,
Development of a large SNP genotyping array and generation of high-density genetic maps in tomato, PLoS One, vol.7, p.40563, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02650989
2: a quantitative trait locus key to the evolution of tomato fruit size, Science, vol.289, pp.85-93, 2000. ,
A new class of regulatory genes underlying the cause of pear-shaped tomato fruit, Proc Natl Acad Sci, vol.99, pp.13302-13308, 2002. ,
A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit, Science, vol.319, pp.1527-1557, 2008. ,
Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication, Nat Genet, vol.40, pp.800-804, 2008. ,
Increase in tomato locule number is controlled by two single-nucleotide polymorphisms located near WUSCHEL, Plant Physiol, vol.156, pp.2244-54, 2011. ,
A cytochrome P450 regulates a domestication trait in cultivated tomato, Proc Natl Acad Sci U S A, vol.110, pp.17125-17155, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02646387
Distribution of SUN, OVATE, LC, and FAS in the tomato germplasm and the relationship to fruit shape diversity, Plant Physiol, vol.156, pp.275-85, 2011. ,
High-density SNP genotyping of tomato (Solanum lycopersicum L) reveals patterns of genetic variation due to breeding, PLoS One, vol.7, p.45520, 2012. ,
,
, Genome Wide Association in tomato reveals 44 candidate loci for fruit metabolic traits, Plant Physiol, vol.165, pp.1120-1152, 2014.
Single nucleotide polymorphism discovery in cultivated tomato via sequencing by synthesis, Plant Genome J, vol.5, p.17, 2012. ,
Population structure and eigenanalysis, PLoS Genet, vol.2, p.190, 2006. ,
Principal components analysis corrects for stratification in genome-wide association studies, Nat Genet, vol.38, pp.904-913, 2006. ,
Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species, Mol Ecol, vol.14, pp.415-439, 2005. ,
vioplot: Violin plot, 2005. ,
Gst and its relatives do not measure differentiation, Mol Ecol, vol.17, pp.4015-4041, 2008. ,
Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows, Mol Ecol Resour, vol.10, pp.564-571, 2010. ,
Application of phylogenetic networks in evolutionary studies, Mol Ecol Evol, vol.23, pp.254-67, 2006. ,
PyCogent: a toolkit for making sense from sequence, Genome Biol, vol.8, p.171, 2007. ,
ADZE: a rarefaction approach for counting alleles private to combinations of populations, Bioinformatics, vol.24, pp.2498-504, 2008. ,
TASSEL: software for association mapping of complex traits in diverse samples, Bioinformatics, vol.23, pp.2633-2638, 2007. ,
Robust locally weighted regression and smoothing scatterplots, J Am Stat Assoc, vol.74, p.829, 1979. ,
R: A Language and Environment for Statistical Computing, 2013. ,
Virtues of the haversine, Sky Telesc, vol.68, p.159, 1984. ,
raster: Geographic data analysis and Modeling, 2013. ,
Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis, Mol Biol Evol, vol.29, pp.1917-1949, 2012. ,
BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evol Biol, vol.7, p.214, 2007. ,
Tracer v.1.5, 2009. ,
Tomato fruit weight 11.3 maps close to fasciated on the bottom of chromosome 11, Theor Appl Genet, vol.123, pp.465-74, 2011. ,
Cell Number Regulator1 affects plant and organ size in maize: implications for crop yield enhancement and heterosis, Plant Cell, vol.22, pp.1057-73, 2010. ,
Molecular cloning, 1989. ,
Genomic analyses provide insights into the history of tomato breeding, Nat Genet, vol.46, pp.1220-1226, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02639866
The scale of population structure in Arabidopsis thaliana, PLoS Genet, vol.6, p.1000843, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00457092
Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico, Heredity (Edinb), vol.92, pp.88-94, 2004. ,
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato, Proc Natl Acad Sci U S A, vol.110, pp.2655-62, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02650774
Spatial genetics of wild tomato species reveals roles of the Andean geography on demographic history, Am J Bot, vol.98, pp.88-98, 2011. ,
, Experimental Station Recod, Volumen 39, vol.39, 1918.
Trait diversity and potential for selection indeces based on variation among regionally adapted processing tomato germplasm, J Am Soc Hortic Sci, vol.137, pp.427-464, 2012. ,