Staphylococcus aureus-Associated Skin and Soft Tissue Infections: Anatomical Localization, Epidemiology, Therapy and Potential Prophylaxis, Curr. Top. Microbiol. Immunol, vol.409, pp.199-227, 2017. ,
Pathogenesis of Staphylococcus aureus Bloodstream Infections, Annu. Rev. Pathol, vol.11, pp.343-364, 2016. ,
Staphylococcus aureus in veterinary medicine, Infect. Genet. Evol. J. Mol. Epidemiol. Evol. Genet. Infect. Dis, vol.21, pp.602-615, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01209522
Bacteriological characteristics of Staphylococcus aureus isolates from humans and bulk milk, J. Dairy Sci, vol.91, pp.564-569, 2008. ,
Virulence Genes of S. aureus from Dairy Cow Mastitis and Contagiousness Risk, Toxins, vol.9, 2017. ,
Host-Bacterial Crosstalk Determines Staphylococcus aureus Nasal Colonization, Trends Microbiol, vol.24, pp.872-886, 2016. ,
Pathogen-derived extracellular vesicles coordinate social behaviour and host manipulation, Semin. Cell Dev. Biol, vol.67, pp.83-90, 2017. ,
Pathogen-Derived Extracellular Vesicle-Associated Molecules That Affect the Host Immune System: An Overview, Front. Microbiol, vol.9, p.2182, 2018. ,
Extracellular membrane vesicles in the three domains of life and beyond, FEMS Microbiol. Rev, vol.43, pp.273-303, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02178889
Staphylococcus aureus Produces Membrane-Derived Vesicles That Induce Host Cell Death, PLoS ONE, vol.6, p.27958, 2011. ,
Staphylococcus aureus ?-Toxin-Dependent Induction of Host Cell Death by Membrane-Derived Vesicles, PLoS ONE, vol.8, p.54661, 2013. ,
Variation among Staphylococcus aureus membrane vesicle proteomes affects cytotoxicity of host cells, Microb. Pathog, vol.93, pp.185-193, 2016. ,
Extracellular vesicles derived from Staphylococcus aureus induce atopic dermatitis-like skin inflammation: S. aureus EV in atopic dermatitis, Allergy, vol.66, pp.351-359, 2011. ,
Staphylococcus aureus-derived extracellular vesicles induce neutrophilic pulmonary inflammation via both Th1 and Th17 cell responses, Allergy, vol.67, pp.1271-1281, 2012. ,
Active Immunization with Extracellular Vesicles Derived from Staphylococcus aureus Effectively Protects against Staphylococcal Lung Infections, Mainly via Th1 Cell-Mediated Immunity, PLOS ONE, vol.10, p.136021, 2015. ,
Staphylococcus aureus -derived membrane vesicles exacerbate skin inflammation in atopic dermatitis, Clin. Exp. Allergy, vol.47, pp.85-96, 2017. ,
Safe Staphylococcal Platform for the Development of Multivalent Nanoscale Vesicles against Viral Infections, Nano Lett, vol.18, pp.725-733, 2018. ,
Staphylococcus aureus Extracellular Vesicles Elicit an Immunostimulatory Response in vivo on the, Murine Mammary Gland. Front. Cell. Infect. Microbiol, vol.8, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01889276
Vancomycin-induced biofilm formation by methicillin-resistant Staphylococcus aureus is associated with the secretion of membrane vesicles, Microb. Pathog, vol.110, pp.225-231, 2017. ,
Staphylococcus aureus Extracellular Vesicles Carry Biologically Active ?-Lactamase, Antimicrob. Agents Chemother, vol.57, pp.2589-2595, 2013. ,
Staphylococcus aureus Membrane-Derived Vesicles Promote Bacterial Virulence and Confer Protective Immunity in Murine Infection Models, Front. Microbiol, vol.9, p.262, 2018. ,
Release of Staphylococcus aureus extracellular vesicles and their application as a vaccine platform, Nat. Commun, vol.9, p.1379, 2018. ,
The Mechanism behind Bacterial Lipoprotein Release: Phenol-Soluble Modulins Mediate Toll-Like Receptor 2 Activation via Extracellular Vesicle Release from Staphylococcus aureus, vol.9, pp.1851-1869, 2018. ,
Gram-positive bacteria produce membrane vesicles: Proteomics-based characterization of Staphylococcus aureusderived membrane vesicles, PROTEOMICS, vol.9, pp.5425-5436, 2009. ,
Proteomic Analysis of Dendritic Cell-Derived Exosomes: A Secreted Subcellular Compartment Distinct from Apoptotic Vesicles, J. Immunol, vol.166, pp.7309-7318, 2001. ,
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis, Immunol. Cell Biol, vol.88, pp.851-856, 2010. ,
Molecular Basis of Virulence in Staphylococcus aureus Mastitis, PLoS ONE, vol.6, p.27354, 2011. ,
Extracellular vesicles: Exosomes, microvesicles, and friends, J. Cell Biol, vol.200, pp.373-383, 2013. ,
The Methods of Choice for Extracellular Vesicles (EVs) Characterization, Int. J. Mol. Sci, vol.18, p.1153, 2017. ,
EVpedia: a community web portal for extracellular vesicles research, Bioinforma. Oxf. Engl, vol.31, pp.933-939, 2015. ,
Intercellular Nanotubes Mediate Bacterial Communication, Cell, vol.144, pp.590-600, 2011. ,
Correlation between resistance mechanisms in Staphylococcus aureus and cell wall and septum thickening, Infect. Drug Resist, vol.10, pp.353-356, 2017. ,
Iron uptake mechanisms of pathogenic bacteria, FEMS Microbiol. Rev, vol.12, pp.325-348, 1993. ,
Role for Mycobacterium tuberculosis membrane vesicles in iron acquisition, J. Bacteriol, vol.196, pp.1250-1256, 2014. ,
Lipoproteins of Gram-Positive Bacteria: Key Players in the Immune Response and Virulence. Microbiol, Mol. Biol. Rev, vol.80, pp.891-903, 2016. ,
, Evaluation of Staphylococcus aureus Lipoproteins: Role in Nutritional Acquisition and Pathogenicity. Front. Microbiol, vol.7, 2016.
Moraxella catarrhalis outer membrane vesicles carry ?-lactamase and promote survival of Streptococcus pneumoniae and Haemophilus influenzae by inactivating amoxicillin, Antimicrob. Agents Chemother, vol.55, pp.3845-3853, 2011. ,
Cephalosporinases associated with outer membrane vesicles released by Bacteroides spp. protect gut pathogens and commensals against ?-lactam antibiotics, J. Antimicrob. Chemother, vol.70, pp.701-709, 2015. ,
Bacterial outer membrane vesicles suppress tumor by interferon-?-mediated antitumor response, Nat. Commun, vol.8, p.626, 2017. ,
The staphylococcal transferrin-binding protein is a cell wall glyceraldehyde-3-phosphate dehydrogenase, Infect. Immun, vol.67, pp.1086-1092, 1999. ,
Enolases from Gram-positive bacterial pathogens and commensal lactobacilli share functional similarity in virulence-associated traits, FEMS Immunol. Med. Microbiol, vol.51, pp.526-534, 2007. ,
Elongation factor Tu is a multifunctional and processed moonlighting protein, Sci. Rep, vol.7, p.11227, 2017. ,
Intracellular proteins moonlighting as bacterial adhesion factors, AIMS Microbiol, vol.4, pp.362-376, 2018. ,
Bacterial Excretion of Cytoplasmic Proteins (ECP): Occurrence, Mechanism, and Function, Trends Microbiol, vol.27, pp.176-187, 2019. ,
Genome-Wide Analysis of Ruminant Staphylococcus aureus Reveals Diversification of the Core Genome, J. Bacteriol, vol.190, pp.6302-6317, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-01454058
Molecular characterisation of Staphylococcus aureus strains isolated from small and large ruminants reveals a host rather than tissue specificity, Vet. Microbiol, vol.137, pp.190-195, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00409359
, Scientific RepoRtS |, vol.10, p.8467, 2020.
Adaptation of Staphylococcus aureus to ruminant and equine hosts involves SaPI-carried variants of von Willebrand factor-binding protein, Mol. Microbiol, vol.77, pp.1583-1594, 2010. ,
Exfoliative toxin E, a new Staphylococcus aureus virulence factor with host-specific activity, Sci. Rep, vol.9, p.16336, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02306146
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications, Nucleic Acids Res, vol.15, pp.1281-1295, 1987. ,
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome, Nucleic Acids Res, vol.31, pp.6976-6985, 2003. ,
Protein abundance profiling of the Escherichia coli cytosol, BMC Genomics, vol.9, p.102, 2008. ,
Costs of life -Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis, Sci. Rep, vol.6, p.28172, 2016. ,
Plasma membrane phosphoinositide organization by protein electrostatics, Nature, vol.438, pp.605-611, 2005. ,
Membrane Phosphatidylserine Regulates Surface Charge and Protein Localization, Science, vol.319, pp.210-213, 2008. ,
Phosphatidylserine flipping enhances membrane curvature and negative charge required for vesicular transport, J. Cell Biol, vol.202, pp.875-886, 2013. ,
Through the wall: extracellular vesicles in Gram-positive bacteria, mycobacteria and fungi, Nat. Rev. Microbiol, vol.13, pp.620-630, 2015. ,
Prokaryotic membrane vesicles: new insights on biogenesis and biological roles, Biol. Chem, vol.396, pp.95-109, 2015. ,
Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions, Nat. Rev. Microbiol, vol.13, pp.605-619, 2015. ,
Genome Sequences of Two Staphylococcus aureus Ovine Strains That Induce Severe (Strain O11) and Mild (Strain O46) Mastitis, J. Bacteriol, vol.193, pp.2353-2354, 2011. ,
Surface proteins of Propionibacterium freudenreichii are involved in its anti-inflammatory properties, J. Proteomics, vol.113, pp.447-461, 2015. ,
Genome sequence survey identifies unique sequences and key virulence genes with unusual rates of amino Acid substitution in bovine Staphylococcus aureus, Infect. Immun, vol.70, pp.3978-3981, 2002. ,
Genome scale analysis of the role of superantigens in Staphylococcus aureus disease pathogenesis, 2011. ,
Genome Sequence of Staphylococcus aureus Newbould 305, a Strain Associated with Mild Bovine Mastitis, J. Bacteriol, vol.194, pp.6292-6293, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01209374
Fine-tuned characterization of Staphylococcus aureus Newbould 305, a strain associated with mild and chronic mastitis in bovines, Vet. Res, vol.45, p.106, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01290602
, Four pediatric deaths from community-acquired methicillin-resistant Staphylococcus aureus -Minnesota and North Dakota, 1997-1999, Centers for Disease Control and Prevention (CDC), vol.48, pp.707-710, 1999.
Genome and virulence determinants of high virulence community-acquired MRSA, Lancet Lond. Engl, vol.359, pp.1819-1827, 2002. ,
Rapid and cost-effective method for micro-organism enumeration based on miniaturization of the conventional plate-counting technique, Le Lait, vol.86, pp.251-257, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00895582
A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification, J. Proteome Res, vol.16, pp.494-503, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01484169
MassChroQ: a versatile tool for mass spectrometry quantification, Proteomics, vol.11, pp.3572-3577, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01481216
A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast, Mol. Cell. Proteomics, vol.14, pp.2056-2071, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02636704
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center, Nucleic Acids Res, vol.45, pp.535-542, 2017. ,
Prediction of protein subcellular localization, Proteins, vol.64, pp.643-651, 2006. ,
Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model, J. Proteome Res, vol.7, pp.5082-5093, 2008. ,
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes, Bioinformatics, vol.26, pp.1608-1615, 2010. ,
SignalP 5.0 improves signal peptide predictions using deep neural networks, Nat. Biotechnol, vol.37, pp.420-423, 2019. ,
The COG database: a tool for genome-scale analysis of protein functions and evolution, Nucleic Acids Res, vol.28, pp.33-36, 2000. ,
A Similar Fragments Merging Approach to Learn Automata on Proteins, Machine Learning: ECML 2005, vol.3720, pp.522-529, 2005. ,
URL : https://hal.archives-ouvertes.fr/inria-00000179
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins, Nucleic Acids Res, vol.34, pp.362-365, 2006. ,
COPid: composition based protein identification, In Silico Biol, vol.8, pp.121-128, 2008. ,
The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences, BioTechniques, vol.28, p.1104, 1102. ,
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis, Nucleic Acids Res. gkz926, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02403170
MoonProt: a database for proteins that are known to moonlight, Nucleic Acids Res, vol.43, pp.277-282, 2015. ,
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams, BMC Bioinformatics, vol.16, p.169, 2015. ,
Rosa da Luz were supported by the International Cooperation Program CAPES/COFECUB Foundation at the Federal University of Minas Gerais funded by CAPES -the Brazilian Federal Agency for the Support and Evaluation of Graduate Education of the Brazilian Ministry of Education, PLOS ONE, vol.14, p.8467, 2018. ,