Repetitive flanking sequences (ReFS): novel molecular markers from microsatellite families, Mol. Ecol. Notes, vol.7, pp.374-376, 2007. ,
, TREES, vol.15
A role for molecular genetics in the recognition and coservation of endangered species, Trends Ecol. Evol, vol.4, pp.279-281, 1989. ,
Biological identifications of mayflies (Ephemeroptera) using DNA barcodes, J. N. Am. Benthol. Soc, vol.24, pp.508-524, 2005. ,
Whole-community DNA barcoding reveals a spatiotemporal continuum of biodiversity at species and genetic levels, Nat. Commun, vol.4, p.1892, 2013. ,
Preserving accuracy in GenBank, Science, vol.319, p.1616, 2008. ,
Prospects for using DNA barcoding to identify spiders in species-rich genera, ZooKeys, vol.16, pp.27-46, 2009. ,
Cladistic analysis of Heliconius butterflies and relatives (Nymphalidae: Heliconiiti): a revised phylogenetic position for Eueides based on sequences from mtDNA and a nuclear gene, Proc. R. Soc. B, vol.264, p.969, 1997. ,
boot: Bootstrap R (S-Plus) functions. R package version 1.3-9, 2013. ,
Identifying earthworms through DNA barcodes: pitfalls and promise, Pedobiologia, vol.52, pp.171-180, 2009. ,
, , 2004.
Speciation and its ontology: the empirical consequences of alternative species concepts for understanding patterns and processes of differentiation, Speciation and its consequences, pp.28-59, 1989. ,
Species concepts and species delimitation, Syst. Biol, vol.56, pp.879-886, 2007. ,
Methods in molecular biology: environmental genetics, pp.275-293, 2008. ,
Unexpected layers of cryptic diversity in Wood White Leptidea butterflies, Nat. Commun, vol.2, p.324, 2011. ,
DNA barcode reference library for Iberian butterflies enables a continental-scale preview of potential cryptic diversity, Sci. Rep, vol.5, p.12395, 2015. ,
Profile hidden Markov models, Bioinformatics, vol.14, pp.755-763, 1998. ,
Pre-and post-mating reproductive barriers drive divergence of five sympatric species of Naryciinae moths (Lepidoptera: Psychidae), Biol. J. Linn. Soc, vol.112, pp.584-605, 2014. ,
, Parsimony jackknifing outperforms Neighbor-Joining. Cladistics, vol.12, pp.99-124, 1996.
Cases in which parsimony or compatibility methods will be positively misleading, Syst. Zool, vol.27, pp.401-410, 1978. ,
Noctuinae III, Noctuidae europaeae, vol.3, pp.1-418, 1997. ,
The Pfam protein families database, Nucleic Acids Res, vol.38, pp.211-222, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01294685
Delimiting species using singlelocus data and the generalized mixed Yule coalescent approach: a revised method and evaluation on simulated data sets, Syst. Biol, vol.62, pp.707-724, 2013. ,
Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA, Annu. Rev. Ecol. Evol. Syst, vol.34, pp.397-423, 2003. ,
ALTER: program-oriented conversion of DNA and protein alignments, Nucleic Acids Res, vol.38, pp.14-18, 2010. ,
Reappraisal of the "Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)": when poor science meets GenBank, Mol. Phyl. Evol, vol.61, pp.914-923, 2011. ,
Can you bank on GenBank?, Trends Ecol. Evol, vol.18, pp.317-319, 2003. ,
Progress toward a general species concept, Evolution, vol.65, pp.923-931, 2011. ,
Genetic patterns in European geometrid moths revealed by the Barcode Index Number (BIN) system, PLoS One, vol.8, p.84518, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02650363
Revision of the Australian Oenochroma vinaria Guenée, 1858 species-complex (Lepidoptera, Geometridae, Oenochrominae): DNA barcoding reveals cryptic diversity and assesses status of type specimen without dissection, Zootaxa, vol.2239, pp.1-21, 2009. ,
Hypobapta tachyhalotaria n. sp. from Tasmania -an example of a new species revealed by DNA barcoding (Lepidoptera, Geometridae), Spixiana, vol.32, pp.237-242, 2009. ,
Identification of birds through DNA barcodes, PLoS Biol, vol.2, p.312, 2004. ,
Phylogenetic systematics, 1966. ,
Biological identification of springtails (Hexapoda: Collembola) from the Canadian Arctic, using mitochondrial DNA barcodes, Can. J. Zool, vol.82, pp.749-754, 2004. ,
Deep sympatric mitochondrial divergence without reproductive isolation in the common redstart Phoenicurus phoenicurus, Ecol. Evol, vol.2, pp.2974-2988, 2012. ,
Success of phylogenetic methods in the four-taxon case, Syst. Biol, vol.42, pp.247-264, 1993. ,
Review of the Eulamprotes wilkella species-group based on morphology and DNA barcodes, with descriptions of new taxa (Lepidoptera, Gelechiidae), Zootaxa, vol.3746, pp.69-100, 2013. ,
A new expanded revision of the European high mountain Sciadia tenebraria species group (Lepidoptera: Geometridae), Zootaxa, vol.2117, pp.1-30, 2009. ,
Cryptic diversity and morphology of high alpine Sattleria -a case study combining DNA barcodes and morphology (Lepidoptera: Gelechiidae), Zootaxa, vol.2981, pp.1-22, 2011. ,
DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae), ZooKeys, vol.404, pp.91-111, 2014. ,
Alpha taxonomy of the genus Kessleria Nowicki, 1864, revisited in light of DNA-barcoding (Lepidoptera, Yponomeutidae), ZooKeys, vol.503, pp.89-133, 2015. ,
Sattleria revisited: unexpected cryptic diversity on the Balkan Peninsula and in the south-eastern Alps (Lepidoptera: Gelechiidae), Zootaxa, vol.3780, pp.282-296, 2014. ,
Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts, Proc. R. Soc. B, vol.272, pp.1525-1534, 2005. ,
London: The International Trust for Zoological Nomenclature, vol.306, 1999. ,
Taxonomic inflation: its influence on macroecology and conservation, Trends Ecol. Evol, vol.19, pp.464-469, 2004. ,
DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent, Bioinformatics, vol.31, pp.991-998, 2015. ,
Fauna Europaea: Lepidoptera. Fauna Europaea version 2.6, 2013. ,
DNA barcode-based delineation of putative species: efficient start for taxonomic workflows, Mol. Ecol. Res, vol.14, pp.706-715, 2014. ,
Filling the gap -COI barcode resolution in eastern Palearctic birds, Front. Zool, vol.6, pp.29-42, 2009. ,
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, J. Mol. Evol, vol.16, pp.111-120, 1980. ,
Integrative taxonomy reveals a new species of Callisto (Lepidoptera, Gracillariidae) in the Alps, ZooKeys, vol.473, pp.157-176, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02634635
, Checklist of Finnish Lepidoptera. Sahlbergia, vol.6, pp.45-190, 2001.
Efficiency of the neighborjoining method in reconstructing deep and shallow evolutionary relationships in large phylogenies, J. Mol. Evol, vol.51, pp.544-53, 2000. ,
Deep sympatric mtDNA divergence in the autumnal moth (Epirrita autumnata), Ecol. Evol, vol.3, pp.126-144, 2013. ,
Species delimitation using genome-wide SNP data, Syst. Biol, vol.63, pp.534-542, 2014. ,
cvAUC: cross-validated area under the ROC curve confidence intervals, 2014. ,
DNA barcoding reveals a largely unknown fauna of Gracillariidae leaf-mining moths in the Neotropics, Mol. Ecol. Res, vol.14, pp.286-296, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02630970
Gene trees in species trees, Syst Biol, vol.46, pp.523-536, 1997. ,
Species, concepts of, Encyclopedia of biodiversity, vol.5, pp.427-440, 2007. ,
Systematics and the origin of species, 1942. ,
The causes of mitochondrial DNA gene tree papraphyly in birds, Mol. Phyl. Evol, vol.54, pp.647-650, 2010. ,
Why neighbor-joining works, Algorithmica, vol.54, pp.1-24, 2009. ,
Delimitation difficulties in species splits: a morphometric case study on the Euxoa tritici complex (Lepidoptera, Noctuidae), Syst. Entomol, vol.30, pp.632-643, 2005. ,
Allopatry as a Gordian knot for taxonomists: patterns of DNA barcode divergence in Arctic-Alpine Lepidoptera, PLoS One, vol.7, p.47214, 2012. ,
Wide-ranging barcoding aids discovery of one-third increase of species richness in presumably well-investigated moths, Sci. Rep, vol.3, p.2901, 2013. ,
Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies, Proc. R. Soc. B, vol.277, pp.2839-2848, 2010. ,
Upstream analyses create problems with DNA-based species delimitation, Syst. Biol, vol.63, pp.262-271, 2014. ,
Review: the integrative future of taxonomy, Front. Zool, vol.7, p.16, 2010. ,
Relationships between gene trees and species trees, Mol. Biol. Evol, vol.5, pp.568-583, 1988. ,
Use of RAD sequencing for delimiting species, Heredity, vol.114, pp.450-459, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01064545
Biased introgression of mitochondrial and nuclear genes: a comparison of diploid and haplodiploid systems, Mol. Ecol, vol.24, pp.5200-5210, 2015. ,
Barcoding beetles: a regional survey of 1872 species reveals high identification success and unusually deep interspecific divergences, PLoS One, vol.9, p.108651, 2014. ,
Paraphyletic and polyphyletic groups, Syst. Biol, vol.26, pp.195-200, 1977. ,
Sequence-based species delimitation for the DNA taxonomy of undescribed insects, Syst. Biol, vol.55, pp.595-609, 2006. ,
ABGD, Automatic Barcode Gap Discovery for primary species delimitation, Mol. Ecol, vol.21, pp.1864-1877, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00704914
BOLD: the Barcode of Life Data System (www.barcodinglife.org), Mol. Ecol. Notes, vol.7, pp.355-364, 2007. ,
A DNA-based registry for all animal species: the Barcode Index Number (BIN) system, PLoS One, vol.8, p.66213, 2013. ,
R: a language and environment for statistical computing, R Foundation for Statistical Computing, 2013. ,
A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (Moths and Butterflies), PLoS One, vol.8, p.58568, 2013. ,
The incidence of species-level paraphyly in animals: a re-assessment, Mol. Phylogenet. Evol, vol.76, pp.10-17, 2014. ,
DNA barcodes and morphology reveal a hybrid hawkmoth in Tahiti (Lepidoptera: Sphingidae), Inv. Syst, vol.26, pp.445-450, 2012. ,
A genomic perspective on the shortcomings of mitochondrial DNA for "barcoding" identification, J. Hered, vol.97, pp.581-594, 2006. ,
Integrative taxonomy: a multisource approach to exploring biodiversity, Annu. Rev. Entomol, vol.55, pp.421-438, 2010. ,
DNA barcoding a regional bee (Hymenoptera: Apoidea) fauna and its potential for ecological studies, Mol. Ecol. Res, vol.9, pp.196-207, 2009. ,
On the inappropriate use of Kimura-2-parameter (K2P) divergences in the DNA-barcoding literature, Cladistics, vol.28, pp.190-194, 2012. ,
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, vol.30, pp.1312-1313, 2014. ,
Axiomatic opportunities and obstacles for inferring a species tree from gene trees, Syst. Biol, vol.63, pp.772-778, 2014. ,
A plea for DNA taxonomy, Trends Ecol. Evol, vol.18, pp.70-74, 2003. ,
Some probabilistic and statistical problems in the analysis of DNA sequences, Am. Math. Soc. Lect. Math. Life Sci, vol.17, pp.57-86, 1986. ,
, Order Lepidoptera Linnaeus, vol.3148, pp.212-221, 1758.
DNA barcoding resolves species complexes in Stigmella salicis and S. aurella species groups and shows additional cryptic speciation in S. salicis (Lepidoptera: Nepticulidae), Entomol. Tidsk, vol.132, pp.235-255, 2012. ,
Modern applied statistics with S, 2002. ,
BIO::phylo-phyloinformatic analysis using perl, BMC Bioinform, vol.12, p.63, 2011. ,
DNA barcoding Australia's fish species, Philos. Trans. R. Soc. B, vol.360, pp.1847-1857, 2005. ,
, TREES, vol.17
Random interbreeding between cryptic lineages of the common Raven: evidence for speciation in reverse, Mol. Ecol, vol.20, pp.2390-2402, 2011. ,
Species concept and phylogenetic theory: a debate, 2000. ,
The statistical consequences of Mendelian heredity in relation to speciation, The new systematics, pp.161-183, 1940. ,
Bayesian species delimitation using multilocus sequence data, Proc. Natl Acad. Sci. USA, vol.107, pp.9264-9269, 2010. ,
A general species delimitation method with applications to phylogenetic placements, Bioinformatics, vol.29, pp.2869-2876, 2013. ,
Towards a comprehensive barcode library for arctic life -Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Canada. Front. Zool, vol.6, p.30, 2009. ,
Associating larvae and adults of Chinese hydropsychidae caddisflies (Insecta: Trichoptera) using DNA sequences, J. N. Am. Benthol. Soc, vol.26, pp.719-742, 2007. ,