Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
Aureliano Bombarely
(1)
,
Michel Moser
(2)
,
Avichai Amrad
(2)
,
Manzhu Bao
(3)
,
Laure Bapaume
(4)
,
Cornelius Barry
(1)
,
Mattijs Bliek
(5)
,
Maaike Boersma
(5)
,
Lorenzo Borghi
(6)
,
Remy Bruggmann
(7)
,
Marcel Bucher
(8)
,
Nunzio d'Agostino
(9)
,
Kevin Davies
(10)
,
Uwe Druege
(11)
,
Natalia Dudareva
(12)
,
Marcos Egea-Cortines
(13)
,
Massimo Delledonne
(14)
,
Noe Fernandez-Pozo
(15)
,
Philipp Franken
(11)
,
Laurie Grandont
(16)
,
J.S. Heslop-Harrison
(17)
,
Jennifer Hintzsche
(18)
,
Mitrick Johns
(19)
,
Ronald Koes
(20)
,
Xiaodan Lv
(20)
,
Eric Lyons
(21)
,
Diwa Malla
(18)
,
Enrico Martinoia
(6)
,
Neil Mattson
(22)
,
Patrice Morel
(23)
,
Lukas Mueller
(15)
,
Joelle Muhlemann
(12)
,
Eva Nouri
(4)
,
Valentina Passeri
(5)
,
Mario Pezzotti
(14)
,
Qinzhou Qi
(18)
,
Didier Reinhardt
(4)
,
Mélanie K Rich
(4)
,
Katja Richert-Pöggeler
(24)
,
Tim Robbins
(25)
,
Michael Schatz
(16)
,
Eric Schranz
(16)
,
Robert Schuurink
(5, 26)
,
Trude Schwarzacher
(27)
,
Kees Spelt
(5)
,
Haibao Tang
(28)
,
Susan Urbanus
(5)
,
Michiel Vandenbussche
(23)
,
Kitty Vijverberg
(22)
,
Gonzalo Villarino
(22)
,
Ryan Warner
(1)
,
Julia Weiss
(13)
,
Zhen Yue
(20)
,
Jan Zethof
(29)
,
Francesca Quattrocchio
(18)
,
Thomas Sims
(18)
,
Cris Kuhlemeier
(30)
1
Department of Horticulture
2 Institute of Plant Sciences
3 HZAU - Huazhong Agricultural University [Wuhan]
4 Department of Biology
5 UvA - University of Amsterdam [Amsterdam] = Universiteit van Amsterdam
6 UZH - Universität Zürich [Zürich] = University of Zurich
7 UNIBE - Universität Bern = University of Bern = Université de Berne
8 Universität zu Köln = University of Cologne
9 CREA - Consiglio per la Ricerca in Agricoltura e l’analisi dell’economia agraria = Council for Agricultural Research and Economics
10 Plant & Food Research
11 Leibniz Institute of Vegetable and Ornamental Crops, Leibniz Association
12 Purdue University [West Lafayette]
13 Universidad Politécnica de Cartagena
14 Dipartimento di Biotecnologie
15 Boyce Thompson Institute [Ithaca]
16 WUR - Wageningen University and Research [Wageningen]
17 Department of Genetics [Leicester]
18 Department of Biological Sciences
19 Northern University
20 BGI - Beijing Genomics Institute [Shenzhen]
21 School of Plant Sciences, iPlant Collaborative
22 Cornell University [New York]
23 RDP - Reproduction et développement des plantes
24 Institute for Epidemiology and Pathogen Diagnostics
25 UON - University of Nottingham, UK
26 CSHL - Cold Spring Harbor Laboratory
27 University of Leicester
28 School of Plant Sciences
29 Radboud University [Nijmegen]
30 Institute of Plant Science
2 Institute of Plant Sciences
3 HZAU - Huazhong Agricultural University [Wuhan]
4 Department of Biology
5 UvA - University of Amsterdam [Amsterdam] = Universiteit van Amsterdam
6 UZH - Universität Zürich [Zürich] = University of Zurich
7 UNIBE - Universität Bern = University of Bern = Université de Berne
8 Universität zu Köln = University of Cologne
9 CREA - Consiglio per la Ricerca in Agricoltura e l’analisi dell’economia agraria = Council for Agricultural Research and Economics
10 Plant & Food Research
11 Leibniz Institute of Vegetable and Ornamental Crops, Leibniz Association
12 Purdue University [West Lafayette]
13 Universidad Politécnica de Cartagena
14 Dipartimento di Biotecnologie
15 Boyce Thompson Institute [Ithaca]
16 WUR - Wageningen University and Research [Wageningen]
17 Department of Genetics [Leicester]
18 Department of Biological Sciences
19 Northern University
20 BGI - Beijing Genomics Institute [Shenzhen]
21 School of Plant Sciences, iPlant Collaborative
22 Cornell University [New York]
23 RDP - Reproduction et développement des plantes
24 Institute for Epidemiology and Pathogen Diagnostics
25 UON - University of Nottingham, UK
26 CSHL - Cold Spring Harbor Laboratory
27 University of Leicester
28 School of Plant Sciences
29 Radboud University [Nijmegen]
30 Institute of Plant Science
Mattijs Bliek
- Fonction : Auteur
- PersonId : 801043
- ORCID : 0000-0002-0488-4873
Marcel Bucher
- Fonction : Auteur
- PersonId : 768556
- ORCID : 0000-0003-1680-9413
Massimo Delledonne
- Fonction : Auteur
- PersonId : 758802
- ORCID : 0000-0002-7100-4581
Ronald Koes
- Fonction : Auteur
- PersonId : 762682
- ORCID : 0000-0003-3793-5072
Patrice Morel
- Fonction : Auteur
- PersonId : 745118
- IdHAL : patrice-morel
- ORCID : 0000-0003-1690-8032
- IdRef : 183709845
Haibao Tang
- Fonction : Auteur
- PersonId : 775056
- ORCID : 0000-0002-3460-8570
Michiel Vandenbussche
- Fonction : Auteur
- PersonId : 738347
- IdHAL : michiel-vandenbussche
- ORCID : 0000-0002-4192-7369
- IdRef : 176705538
Francesca Quattrocchio
- Fonction : Auteur
- PersonId : 801044
- ORCID : 0000-0001-8040-4061
Résumé
Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n = 14) containing 32,928 and 36,697 protein-coding genes, respectively. The genomes reveal that the Petunia lineage has experienced at least two rounds of hexaploidization: the older gamma event, which is shared with most Eudicots, and a more recent Solanaceae event that is shared with tomato and other solanaceous species. Transcription factors involved in the shift from bee to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral colour patterns and pollination systems. The high-quality genome sequences will enhance the value of Petunia as a model system for research on unique biological phenomena such as small RNAs, symbiosis, self-incompatibility and circadian rhythms.
Domaines
Botanique| Origine | Fichiers éditeurs autorisés sur une archive ouverte |
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