The coffee genome provides insight into the convergent evolution of caffeine biosynthesis - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Article Dans Une Revue Science Année : 2014

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

1 LBGB - Laboratoire de Bioinformatique pour la Génomique et la Biodiversité
2 SUNY Buffalo - University at Buffalo [SUNY]
3 UMR IPME - UMR - Interactions Plantes Microorganismes Environnement
4 UMR AGAP - Amélioration génétique et adaptation des plantes méditerranéennes et tropicales
5 Cirad-BIOS - Département Systèmes Biologiques
6 UMR DIADE - Diversité, adaptation, développement des plantes
7 ENEA - Agenzia Nazionale per le nuove Tecnologie, l’energia e lo sviluppo economico sostenibile = Italian National Agency for New Technologies, Energy and Sustainable Economic Development
8 Department of Mathematics and Statistics [Ottawa]
9 IG - Institut de Génomique d'Evry
10 IRD - Institut de Recherche pour le Développement
11 UMR RPB - Résistance des plantes aux bio-agresseurs
12 Bioversity, Parc Scientifique Agropolis II
13 Nestlé France
14 CeBiTec - Center for Biotechnology
15 Universität Bielefeld = Bielefeld University
16 URGI - Unité de Recherche Génomique Info
17 CEA - Commissariat à l'énergie atomique et aux énergies alternatives
18 Chongqing University of Science & Technology
19 UIUC - University of Illinois at Urbana-Champaign [Urbana]
20 IRBio UB - Institut de Recerca de la Biodiversitat - Biodiversity Research Institute [Barcelona, Spain]
21 University of Ottawa [Ottawa]
22 Department of Mathematics [College Park]
23 Università degli studi di Trieste = University of Trieste
24 Indonesian Coffee and Cocoa Research Institute
25 CENARGEN - Embrapa Recursos Genéticos e Biotecnologia = Embrapa Genetic Resources & Biotechnology
26 QAAFI - Queensland Alliance for Agriculture and Food Innovation
27 UQ [All campuses : Brisbane, Dutton Park Gatton, Herston, St Lucia and other locations] - The University of Queensland
28 Hawaii Agriculture Research Center
29 University of Arizona
30 UMR 8030 - Génomique métabolique
31 UEVE - Université d'Évry-Val-d'Essonne
Adriana A. Alberti
Maud Lepelley
  • Fonction : Auteur
Michel Rigoreau
  • Fonction : Auteur

Résumé

Coffee is a valuable beverage crop due to its characteristic flavor, aroma, and the stimulating effects of caffeine. We generated a high-quality draft genome of the species Coffea canephora, which displays a conserved chromosomal gene order among asterid angiosperms. Although it shows no sign of the whole-genome triplication identified in Solanaceae species such as tomato, the genome includes several species-specific gene family expansions, among them N-methyltransferases (NMTs) involved in caffeine production, defense-related genes, and alkaloid and flavonoid enzymes involved in secondary compound synthesis. Comparative analyses of caffeine NMTs demonstrate that these genes expanded through sequential tandem duplications independently of genes from cacao and tea, suggesting that caffeine in eudicots is of polyphyletic origin.
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Dates et versions

hal-02641562 , version 1 (07-12-2023)

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Copyright (Tous droits réservés)

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France Denoeud, Lorenzo Carretero-Paulet, Alexis Dereeper, Gaëtan Droc, Romain Guyot, et al.. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science, 2014, 345 (6201), pp.1181-1184. ⟨10.1126/science.1255274⟩. ⟨hal-02641562⟩
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