Genome canalization: the coevolution of transposable and interspersed repetitive elements with single copy DNA, Transposable Elements and Evolution, vol.1992, pp.108-139 ,
The evolutionary dynamics of repetitive DNA in eukaryotes, Nature, vol.371, pp.215-220, 1994. ,
Sequence composition and genome organization of maize, Proc Natl Acad Sci, vol.101, pp.14349-14354, 2004. ,
, International Rice Genome Sequencing Project: The map-based sequence of the rice genome, Nature, vol.436, pp.793-800, 2005.
Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations, Mol Genet Genomics, vol.274, pp.119-130, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00964194
Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat, Genetics, vol.180, pp.1071-1086, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-02654898
Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B, Plant J, vol.48, pp.463-474, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00964354
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces, Plant Cell, vol.22, issue.6, pp.1686-701, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00964451
A unified classification system for eukaryotic transposable elements, Nat Rev Genet, vol.8, pp.973-982, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00169819
Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes, Gene, vol.311, pp.1-11, 2003. ,
Nuclear DNA amounts in Angiosperms, Ann Bot, vol.76, pp.113-176, 1995. ,
The evolution of grass genome organisation and function, Symp Soc Exp Biol, vol.51, pp.123-126, 1998. ,
Doubling genome size without polyploidization: dynamics of retrotransposition driven genomic expansions in Oryza australiensis, a wild relative of rice, Genome Res, vol.16, pp.1262-1269, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00164404
Detection of rye DNA in wheat-rye hybrids and wheat translocation stocks using total genomic DNA as a probe, Plant Mol Biol Rep, vol.7, pp.150-158, 1989. ,
Genomic in situ hybridization to identify alien chromosomes and chromosome segments in wheat, Theor Appl Genet, vol.84, pp.778-786, 1992. ,
Simultaneous discrimination of the three genomes in hexaploid wheat by multicolor fluorescence in situ hybridization using total genomic and highly repeated DNA probes, Genome, vol.36, pp.489-494, 1993. ,
Newly synthesized wheat allohexaploids display progenitor-dependent meiotic stability and aneuploidy but structural genomic additivity, New Phytol, vol.186, issue.1, pp.86-101, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-02665233
, Evolution of crops, pp.184-192, 1995.
Phylogenetic reconstruction based on low copy DNA sequence data in an allopolyploid: the B genome of wheat, Genome, vol.42, pp.351-360, 1999. ,
Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat, Proc Natl Acad Sci, vol.99, pp.8133-8138, 2002. ,
Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat, Mol Biol Evol, vol.23, pp.1386-1396, 2006. ,
Detection of alien chromosomes from Sgenome species in the addition/substitution lines of bread wheat and visualization of A-, B-and D-genomes by GISH, Hereditas, vol.135, issue.2-3, pp.119-141, 2001. ,
Coevolution of A and B genomes in allotetraploid Triticum dicoccoides, Genome, vol.43, issue.6, pp.1021-1027, 2000. ,
Simultaneous painting of three genomes in hexaploid wheat by BAC-FISH, Genome, vol.47, issue.5, pp.979-87, 2004. ,
Identification of the entire chromosome complement of bread wheat by two-colour FISH, Genome, vol.40, issue.5, pp.589-93, 1997. ,
Phylogenetic reconstruction of Aegilops section Sitopsis and the evolution of tandem repeats in the diploids and derived wheat polyploids, Genome, vol.49, pp.1023-1035, 2006. ,
Repetitive DNAs of wild emmer wheat (Triticum dicoccoides) and their relation to S-genome species: molecular cytogenetic analysis, Genome, vol.45, pp.391-401, 2002. ,
Molecular basis of evolutionary events that shaped the Hardness locus in diploid and polyploid wheat species (Triticum and Aegilops), Plant Cell, vol.17, pp.1033-1045, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00964165
Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes, Genetics, vol.174, pp.1493-1504, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00964162
Acc homoeoloci and the evolution of wheat genomes, Proc Natl Acad Sci, vol.105, pp.9691-9696, 2008. ,
New insights into the origin of the B genome of hexaploid wheat: Evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides, BMC Genomics, vol.9, p.555, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00964177
Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels, Genome Research, vol.15, pp.526-536, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00964142
Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat, Plant Cell, vol.15, issue.5, pp.1186-97, 2003. ,
Genome plasticity a key factor in the success of polyploid wheat under domestication, Science, vol.316, issue.5833, pp.1862-1868, 2007. ,
Isolation and sequence analysis of the wheat B genome subtelomeric DNA, BMC Genomics, vol.10, p.414, 2009. ,
Fluorescence in situ hybridization polymorphism using two repetitive DNA clones in different cultivars of wheat, Plant Breeding, vol.122, pp.396-400, 2003. ,
Arm homoeology of wheat and rye chromosomes, Genome, vol.29, pp.873-882, 1987. ,
Structural evolution of wheat chromosomes 4A, 5A, and 7B and its impact on recombination, Theor Appl Genet, vol.91, pp.282-288, 1995. ,
, BMC Plant Biology, vol.11, 2011.
Analysis of CACTA DNAtransposon Caspar evolution across wheat species by sequence comparison and in situ hybridization, Mol Genet Genomics, vol.284, issue.1, pp.11-23, 2010. ,
Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat, Plant Biotechnol J, vol.8, issue.2, pp.196-210, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00964403
Homoeologous relationships of rice, wheat and maize chromosomes, Mol Gen Genet, vol.241, pp.483-490, 1993. ,
TREP: A database for Triticeae repetitive elements, Trends Plant Sci, vol.7, pp.561-562, 2002. ,
Basic local alignment search tool, J Mol Biol, vol.215, issue.3, pp.403-410, 1990. ,
The Pfam protein families database, Nucl Acids Res, vol.38, pp.211-222, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01294685
, National Center for Biotechnology Information Nucleotide database
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res, vol.22, pp.4673-4680, 1994. ,
Chromosome 'painting' in plants -a feasible technique, Chromosoma, vol.104, pp.315-320, 1996. ,
Genomic Southern and In Situ hybridization for plant genome analysis, Methods of Genome Analysis in Plants, pp.163-179, 1996. ,
Sequence of events leading to near-complete genome turnover in allopolyploid Nicotiana within five million years, New Phytol, vol.175, pp.756-763, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-02667171
BAC-FISH in wheat identifies chromosome landmarks consisting of different types of transposable elements, Chromosoma, vol.112, pp.288-299, 2004. ,
Giemsa C-banding and the evolution of wheat, Proc Natl Acad Sci, vol.71, pp.4086-4090, 1974. ,
Genome differentiation in Aegilops. 1. Distribution of highly repetitive DNA sequences on chromosome of diploid species, Genome, vol.39, issue.2, pp.293-306, 1996. ,
Molecular cloning Cold Spring Harbor: Cold Spring Harbor Lab, 1982. ,
A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity, Anal Biochem, vol.132, pp.6-13, 1983. ,
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0, Mol Biol Evol, vol.24, pp.1596-1599, 2007. ,
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, J Mol Evol, vol.16, pp.111-120, 1980. ,
The paleontology of intergene retrotransposons of maize, Nat Genet, vol.20, pp.43-45, 1998. ,
Rapid recent growth and divergence of rice nuclear genomes, Proc Natl Acad Sci, vol.101, pp.12404-12410, 2004. ,
Submit your next manuscript to BioMed Central and take full advantage of: ? Convenient online submission ? Thorough peer review ? No space constraints or color figure charges ? Immediate publication on acceptance ? Inclusion in PubMed, CAS, Scopus and Google Scholar ? Research which is freely available for redistribution, The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats, vol.11, p.99, 2011. ,