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, For computing phylogenetic distance, a cut off value of 50% bootstrap value was used. Frequency of the derived and ancestral alleles of M9 was analyzed in the following sub-populations: S. p_Per (N=30), reconstructed using the Neighbor-Joining statistical method with 1000 bootstrap replications and Maximum Composite Likelihood model

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S. , S. , and S. Pennellii, are depicted in red, black, green and blue, respectively. Large (>60 g), medium (>10g and <60g) and small (<10g) fruit-bearing lines are represented as large, medium and no dots after their name, respectively. Accessions carrying the M9 mutation are depicted with an asterisk (*). C. Frequency of derived and ancestral M9 SNP allele in tomato subpopulations