F. Abeles, P. Morgan, and J. M. Saltveit, Ethylene in Plant Biology, 1992.

P. Adams, Effect of increasing the salinity of the nutrient solution with major nutrients or sodium chloride on the yield quality and composition of tomato grown in rockwool, J Hort Sci, vol.66, pp.201-207, 1991.

L. Adams-phillips, C. Barry, and G. J. , Signal transduction systems regulating fruit ripening, Trends Plant Sci, vol.9, pp.331-338, 2004.

T. Ahn, A. Schofield, and G. P. , Changes in antioxidant enzyme activities during tomato fruit development, Physiol Mol Biol Plant, vol.8, pp.241-249, 2002.

N. Ahsan, D. G. Lee, S. H. Lee, K. W. Lee, J. Bahk et al., A proteomic screen and identification of waterloggingregulated proteins in tomato roots, Plant and Soil, vol.295, pp.37-51, 2007.

N. Ahsan, J. Renaut, and S. Komatsu, Recent developments in the application of proteomics to the analysis of plant responses to heavy metals, Proteomics, vol.9, pp.2602-2621, 2009.

S. Alvarez, E. L. Marsh, S. G. Schroeder, and D. P. Schachtman, Metabolomic and proteomic changes in the xylem sap of maize under drought, Plant Cell Environ, vol.31, pp.325-340, 2008.

K. Apel and H. Hirt, Reactive oxygen species: Metabolism, oxidative stress, and signal transduction, Annu Rev Plant Biol, vol.55, pp.373-399, 2004.

A. O. Avrova, H. E. Stewart, D. Jong, W. Heilbronn, J. Lyon et al., A cysteine protease gene is expressed early in resistant potato interactions with Phytophthora infestans, Mol Plant Microbe Interact, vol.12, pp.1114-1119, 1999.

P. Bagnaresi, D. Mazars-marty, P. Pupillo, F. Marty, and J. F. Briat, Tonoplast subcellular localization of maize cytochrome b5 reductases, Plant J, vol.24, pp.645-654, 2000.

J. D. Bewley, M. Banik, R. Bourgault, J. A. Feurtado, P. Toorop et al., Endo-mannanase activity increases in the skin and outer pericarp of tomato fruits during ripening, J Exp Bot, vol.51, pp.529-538, 2000.

D. Bhushan, A. Pandey, M. K. Choudhary, A. Datta, S. Chakraborty et al., Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress, Mol Cell Proteomics, vol.6, pp.1868-1884, 2007.

J. Biale, Growth, maturation and senescence in fruits, Science, vol.146, pp.880-888, 1964.

D. S. Bush, Calcium regulation in plant cells and its role in signaling, Annu Rev Plant Physiol Plant Mol Biol, vol.46, pp.95-122, 1995.

F. Carrari, C. Baxter, and U. Br, Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior, Plant Physiol, vol.142, pp.1380-1396, 2006.

F. Carrari and A. R. Fernie, Metabolic regulation underlying tomato fruit development, J Exp Bot, vol.57, pp.1883-1897, 2006.

R. Chen and G. P. , Structure, functions and regulation of NAD and NADP-dependent isocitrate dehydrogenases in higher plants and in other organisms, Plant Physiol Biochem, vol.28, pp.411-427, 1990.

M. Y. Chung, J. Vrebalov, and R. Alba, A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening, Plant J, vol.64, pp.936-947, 2010.

G. B. Clark, A. Sessions, D. J. Eastburn, and S. J. Roux, Differential expression of members of the annexin multigene Family in Arabidopsis, Plant Physiol, vol.126, pp.1072-1084, 2001.

R. L. Cross, M. , and V. , The evolution of A-, F-, and Vtype ATP synthases and ATPases: Reversals in function and changes in the H + /ATP coupling ratio, FEBS Lett, vol.576, pp.1-4, 2004.

M. L. D'amico, R. Izzo, F. Tognoni, A. Pardossi, and F. Navari-izzo, Application of diluted sea water to soilless culture of tomato (Lycopersicon esculentum Mill.): Effects on plant growth, yield, fruit quality and antioxidant capacity, Food Agric Environ, vol.1, pp.112-116, 2003.

N. Dai, M. A. German, and T. Matsevitz, LeFRK2, the gene encoding the major fructokinase in tomato fruits, is not required for starch biosynthesis in developing fruits, Plant Sci, vol.162, pp.423-430, 2002.

S. De-pascale, A. Maggio, V. Fogliano, P. Ambrosino, and R. A. , Irrigation with saline water improves carotenoids content and antioxidant activity of tomato, J Hort Sci Bio, vol.76, pp.447-453, 2001.

M. Dorais, A. P. Papadopoulos, and A. Gosselin, Influence of electric conductivity management on greenhouse tomato yield and fruit quality, Agronomie, vol.21, pp.367-383, 2001.

R. Drake, I. John, A. Farrell, W. Cooper, W. Schuch et al., Isolation and analysis of cDNAs encoding tomato cysteine proteases expressed during leaf senescence, Plant Mol Biol, vol.30, pp.755-767, 1996.

D. L. Ehret, R. E. Redmann, B. L. Harvey, and C. A. , , 1990.

, Salinity-induced calcium deficiencies in wheat and barley, Plant Soil, vol.128, pp.143-151

M. Faurobert, C. Mihr, and N. Bertin, Major proteome variations associated with cherry tomato pericarp development and ripening, Plant Physiol, vol.143, pp.1327-1346, 2007.
URL : https://hal.archives-ouvertes.fr/hal-02667189

M. Faurobert, E. Pelpoir, and C. J. , Phenol extraction of proteins for proteomic studies of recalcitrant plant tissues, p.350, 2006.

. Manaa and . Al,

, Plant Proteomics. Methods and Protocols, vol.355, pp.9-14

Z. Fei, X. Tang, and R. M. Alba, Comprehensive EST analysis of tomato and comparative genomics of fruit ripening, Plant J, vol.40, pp.47-59, 2004.

D. Flower, The lipocalin family: Structure and function, Biochem J, vol.318, pp.1-14, 1996.

A. Franks, G. L. Mark-byrne, D. J. Maxwell, and F. Gara, A putative RNA-binding protein has a role in virulence in Ralstonia solanacearum GMI1000, Mol Plant Pathol, vol.9, pp.67-72, 2008.

F. Gao, Y. Zhou, W. Zhu, X. Li, L. Fan et al., Proteomic analysis of cold stress-responsive proteins in Thellungiella rosette leaves, Planta, vol.230, pp.1033-1046, 2009.

H. Gautier, F. Lopez-lauri, and C. Massot, Impact of ripening and salinity on tomato fruit ascorbate content and enzymatic activities related to ascorbate recycling, Fun Plant Sci Bio, vol.3, pp.66-75, 2009.
URL : https://hal.archives-ouvertes.fr/hal-02662909

S. S. Gill and T. N. , Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants, Plant Physiol Biochem, vol.48, pp.909-930, 2010.

J. Giovannoni, Molecular biology of fruit maturation and ripening, Annu Rev Plant Physiol Plant Mol Biol, vol.52, pp.725-749, 2001.

J. J. Giovannoni, Genetic regulation of fruit development and ripening, Plant Cell, vol.16, pp.170-180, 2004.

J. J. Giovannoni, Fruit ripening mutants yield insights into ripening control, Curr Opin Plant Biol, vol.10, pp.283-289, 2007.

L. D. Gomez, G. Noctor, M. R. Knight, and C. H. Foyer, Regulation of calcium signalling and gene expression by glutathione, J Exp Bot, vol.55, pp.1851-1859, 2004.

P. Gong, J. Zhang, and H. Li, Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato, J Exp Bot, vol.61, pp.3563-3575, 2010.

A. Gupta and K. N. , Sugar signalling and gene expression in relation to carbohydrate metabolism under abiotic stresses in plants, J Biosci, vol.30, pp.761-776, 2005.

L. He, X. Lu, and J. Tian, Proteomic analysis of the effects of exogenous calcium on hypoxic-responsive proteins in cucumber roots, Proteome Sci, vol.10, p.42, 2012.

P. Holmes, R. Farquharson, P. J. Hall, and R. B. , Proteomic analysis of root meristems and the effects of acetohydroxyacid synthase-inhibiting herbicides in the root of Medicago truncatula, J Proteome Res, vol.5, pp.2309-2316, 2006.

A. Incerti, F. Navari-izzo, A. Pardossi, A. Mensuali, and R. Izzo, Effect of sea water on biochemical properties of fruit of tomato (Lycopersicon esculentum Mill.) genotypes differing for ethylene production, J Sci Food Agric, vol.87, pp.2528-2537, 2007.

A. Itai, T. Kotaki, K. Tanabe, F. Tamura, D. Kawaguchi et al., Rapid identification of 1-aminocyclopropane-1-carboxylate (ACC) synthase genotypes in cultivars of Japanese pear (Pyrus pyrifolia Nakai) using CAPS markers, Theor Appl Genet, vol.106, pp.1266-1272, 2003.

Y. Jiang, B. Yang, N. S. Harris, and M. K. Deyholos, Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots, J Exp Bot, vol.58, pp.3591-3607, 2007.

A. Jimenez, G. Creissen, and B. Kular, Changes in oxidative processes and components of the antioxidant system during tomato fruit ripening, Planta, vol.214, pp.751-758, 2002.

L. S. Jouaville, P. Pinton, C. Bastianutto, G. A. Rutter, and R. R. , Regulation of mitochondrial ATP synthesis by calcium: Evidence for a long-term metabolic priming, Proc Natl Acad Sci, vol.96, pp.13807-13812, 1999.

R. Karlova, F. M. Rosin, and J. Busscher-lange, Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening, Plant Cell, vol.23, pp.923-941, 2011.

L. Karni and A. B. , Fructokinase and hexokinase from pollen grains of bell pepper (Capsicum annuum L.): Possible role in pollen germination under conditions of high temperature and CO 2 enrichment, Ann Bot, vol.90, pp.607-612, 2002.

S. Kaspar, A. Matros, and H. P. Mock, Proteome and flavonoid analysis reveals distinct responses of epidermal tissue and whole leaves upon UV-B radiation of Barley (Hordeum vulgare L.) seedlings, J Proteome Res, vol.9, pp.2402-2411, 2010.

C. Kaya, B. E. Ak, and D. Higgs, Response of salt-stressed strawberry plants to supplementary calcium nitrate and/or potassium nitrate, J Plant Nutr, vol.26, pp.543-560, 2003.

C. S. Kim, J. M. Kwak, H. G. Nam, K. C. Kim, and B. H. Cho, Isolation and characterization of two cDNA clones that are rapidly induced during the wound response of Arabidopsis thaliana, Plant Cell Rep, vol.13, pp.340-343, 1994.

E. J. Kok, S. J. Lehesranta, and J. P. Van-dijk, Changes in gene and protein expression during tomato ripening. Consequences for the safety assessment of new crop plant varieties, Food Sci Technol Int, vol.14, pp.503-518, 2008.

K. Kosová, P. Vítámvás, I. T. Prá?il, and R. J. , Plant proteome changes under abiotic stress. Contribution of proteomics studies to understanding plant stress response, J Proteomics, vol.74, pp.1301-1322, 2011.

M. Lemaire-chamley, J. Petit, and V. Garcia, Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato, Plant Physiol, vol.139, pp.750-769, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02679575

R. Malho, D. Kaloriti, and E. Sousa, Calcium and rhythms in plant cells, Biol Rhythm Res, vol.37, pp.297-314, 2006.

A. Manaa, B. Ahmed, H. , and V. Bt, Salt and genotype impact on plant physiology and root proteome variations in tomato, J Exp Bot, vol.62, pp.2797-2813, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02646770

E. J. Mcmurchie, W. M. Mcglasson, and I. L. Eaks, Treatment of fruit with propylene gives information about the biogenesis of ethylene, Nature, vol.237, pp.658-660, 1972.

R. Mittler, S. Vanderauwera, M. Gollery, V. Breusegem, and F. , Reactive oxygen gene network of plants, Trends Plant Sci, vol.9, pp.490-498, 2004.

P. Mohammadi, A. Moieni, and S. Komatsu, Comparative proteome analysis of drought-sensitive and drought-tolerant rapeseed roots and their hybrid F1 line under drought stress, Amino Acids, vol.43, pp.2137-2152, 2012.

S. Moore, J. Vrebalov, P. Payton, and G. J. , Use of genomics tools to isolate key ripening genes and analyse fruit maturation in tomato, J Exp Bot, vol.53, pp.2023-2030, 2002.

I. Neta-sharir, T. Isaacson, S. Lurie, and D. Weiss, Dual role for tomato heat shock protein 21: Protecting photosystem II from oxidative stress and promoting color changes during fruit maturation, Plant Cell, vol.17, pp.1829-1838, 2005.

D. Page, B. Gouble, and B. Valot, Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage, Planta, vol.232, pp.483-500, 2010.
URL : https://hal.archives-ouvertes.fr/hal-02662653

C. Plieth, Calcium: Just another regulator in the machinery of life, Ann Bot, vol.96, pp.1-8, 2005.

P. Jz, G. Houlné, M. L. Schantz, and R. Schantz, Characterization and gene expression of an annexin during fruit development in Capsicum annuum, FEBS Lett, vol.383, pp.208-212, 1996.

L. S. Ramagli and L. V. Rodriguez, Quantitation of microgram amounts of protein in two-dimensional polyacrylamide gel electrophoresis sample buffer, Electrophoresis, vol.6, pp.559-563, 1985.

W. Ramakrishna, Z. Deng, C. K. Ding, A. K. Handa, and R. H. Ozminkowski, A novel small heat shock protein gene, vis1, contributes to pectin depolymerization and juice viscosity in tomato fruit, Plant Physiol, vol.131, pp.725-735, 2003.

N. Ranc, S. Munos, S. Santoni, and C. M. , A clarified position for Solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (solanaceae), BMC Plant Biol, vol.8, p.130, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00489786

M. Rappas, H. Niwa, and X. Zhang, Mechanisms of AT-Pases-A multidisciplinary approach, Curr Protein Pept Sci, vol.5, pp.89-105, 2004.

M. Rocco, D. 'ambrosio, C. Arena, S. Faurobert, M. Scaloni et al., Proteomic analysis of tomato fruits from two ecotypes during ripening, Proteomics, vol.6, pp.3781-3791, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02656588

M. Rossignol, J. B. Peltier, H. P. Mock, A. Matros, A. M. Maldonado et al., Plant proteome analysis: A 2004-2006 update, Proteomics, vol.6, pp.5529-5548, 2006.

A. Sadka, B. Artzi, and L. Cohen, Arsenite reduces acid content in citrus fruit, inhibits activity of citrate synthase but induces its gene expression, J Am Soc Hort Sci, vol.125, pp.288-293, 2000.

G. H. Salekdeh, J. Siopongco, L. J. Wade, B. Ghareyazie, and B. J. , Proteomic analysis of rice leaves during drought stress and recovery, Proteomics, vol.2, pp.1131-1145, 2002.

D. F. Seals and R. S. , A vacuole-associated annexin protein, VCaB42, correlates with the expansion of tobacco cells, Plant Physiol, vol.115, pp.753-761, 1997.

C. Smith, C. F. Watson, and P. C. Morris, Inheritance and effect on ripening of antisense polygalacturonase genes in transgenic tomatoes, Plant Mol Biol, vol.14, pp.369-379, 1990.

H. Sobhanian, N. Motamed, F. R. Jazii, T. Nakamura, and S. Komatsu, Salt stress induced differential proteome and metabolome response in the shoots of Aeluropus lagopoides (Poaceae), a halophyte C4 plant, J Proteome Res, vol.9, pp.2882-2897, 2010.

J. Y. Song and J. H. Roe, The role and regulation of Trxl, a cytosolic thioredoxin in Schizosaccharomyces pombe, J Microbiol, vol.46, pp.408-414, 2008.

A. Sü-le, F. Vanrobaeys, G. Hajos, J. Van-beeumen, and D. B. , Proteomic analysis of small heat shock protein isoforms in barley shoots, Phytochemistry, vol.65, pp.1853-1863, 2004.

D. Takemoto, N. Doke, and K. K. , Characterization of elicitor-inducible tobacco genes isolated by differential hybridization, J Gen Plant Pathol, vol.67, pp.89-96, 2001.

J. A. Trewavas and M. R. , Ca 2 + signaling in plant cells: The big network, Curr Opin Plant Biol, vol.1, pp.428-433, 1998.

A. R. Vicente, G. A. Manganaris, G. O. Sozzi, and C. H. Crisosto, Nutritional quality of fruits and vegetables, Postharvest Handling: A Systems Approach, 2ed, pp.57-106, 2009.

E. Vierling, The roles of heat shock proteins in plants, Annu Rev Plant Physiol Plant Mol Biol, vol.42, pp.579-620, 1991.

P. Vizoso, L. Meisel, and A. Tittarelli, Comparative EST transcript profiling of peach fruits under different post-harvest conditions reveals candidate genes associated with peach fruit quality, BMC Genomics, vol.10, p.423, 2009.

C. Wang, L. J. Zhang, and R. D. Huang, Cytoskeleton and plant salt stress tolerance, Plant Signal Behav, vol.6, pp.29-31, 2011.

M. C. Wang, Z. Y. Peng, C. L. Li, F. Li, C. Liu et al., Proteomic analysis on a high salt tolerance introgression strain of Triticum aestivum/Thinopyrum ponticum, Proteomics, vol.8, pp.1470-1489, 2008.

S. F. Yang and N. E. Hoffman, Ethylene biosynthesis and its regulation in higher plants, Annu Rev Plant Physiol, vol.35, pp.155-189, 1984.

H. Zhang, B. Han, and T. Wang, Mechanisms of plant salt response: Insights from proteomics, J Proteome Res, vol.11, pp.49-67, 2012.

J. Zou, C. Liu, and C. X. , Proteomics of rice in response to heat stress and advances in genetic engineering for heat tolerance in rice, Plant Cell Rep, vol.30, pp.2155-2165, 2011.