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Selfish genetic elements and speciation, Heredity, vol.80, pp.2-8, 1998. ,
Modern genomes with retro-look: retrotransposed elements, retroposition and the origin of new genes, Genome Dyn, vol.3, pp.175-190, 2007. ,
Virus Taxonomy, VIIIth Report of the ICTV, 2005. ,
Repbase Update, a database of eukaryotic repetitive elements, Cytogenet. Genome Res, vol.110, pp.462-467, 2005. ,
ACLAME: a CLAssification of Mobile genetic Elements, Nucleic Acids Res, vol.32, pp.45-49, 2004. ,
The Gypsy Database (GyDB) of mobile genetic elements, Nucleic Acids Res, vol.36, pp.38-46, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-02648997
Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees, Biol. Direct, vol.4, p.41, 2009. ,
, GenBank. Nucleic Acids Res, vol.37, pp.26-31, 2009.
Relationships of Gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis, BMC Evol. Biol, vol.8, p.276, 2008. ,
Profile hidden Markov models, Bioinformatics, vol.14, pp.755-763, 1998. ,
The chromo superfamily: new members, duplication of the chromo domain and possible role in delivering transcription regulators to chromatin, Nucleic Acids Res, vol.23, pp.4229-4233, 1995. ,
MEROPS: the peptidase database, Nucleic Acids Res, vol.38, pp.227-233, 2010. ,
Bioinformatic flowchart and database to investigate the origins and diversity of Clan AA peptidases, Biol. Direct, vol.4, p.3, 2009. ,
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res, vol.25, pp.3389-3402, 1997. ,
Phylograph: a multifunction Java editor for handling phylogenetic trees, Biotechvana Bioinformatics, 2008. ,
The GyDB Collection of Viral and Mobile Genetic Element Models, Biotechvana Bioinformatics, 2009. ,
The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis, Plant J, vol.441, pp.562-574, 2008. ,
PwRn1, a novel Ty3/gypsy-like retrotransposon of Paragonimus westermani: molecular characters and its differentially preserved mobile potential according to host chromosomal polyploidy, BMC. Genomics, vol.9, p.482, 2008. ,
A lineage-specific centromere retrotransposon in Oryza brachyantha, Plant J, vol.60, pp.820-831, 2009. ,
Genomic screening in dioecious ''yerba mate'' tree (Ilex paraguariensis A. St. Hill., Aquifoliaceae) through representational difference analysis, Genetica, vol.138, pp.567-578, 2010. ,
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom, BMC Genomics, vol.10, p.624, 2009. ,
, Genome sequence of the pea aphid Acyrthosiphon pisum, The International Aphid Genomics Consortium, vol.8, p.1000313, 2010.
Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons, J. Virol, vol.73, pp.5186-5190, 1999. ,
Is the evolution of transposable elements modular?, Genetica, vol.107, pp.15-25, 1999. ,
URL : https://hal.archives-ouvertes.fr/hal-00428431
A group of deuterostome Ty3/ gypsy-like retrotransposons with Ty1/ copia-like pol-domain orders, Mol. Genet. Genomics, vol.267, pp.481-491, 2002. ,
Origin and evolution of retrotransposons, Mobile DNA II, pp.1111-1144, 2002. ,
Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses, Genome Res, vol.11, pp.1187-1197, 2001. ,
How Athila retrotransposons survive in the Arabidopsis genome, BMC. Genomics, vol.9, p.219, 2008. ,
The causes and consequences of HIV evolution, Nat. Rev. Genet, vol.5, pp.52-61, 2004. ,
Long terminal repeat retrotransposons jump between species, Proc. Natl Acad. Sci. USA, vol.96, pp.12211-12212, 1999. ,
Evidence for the recent horizontal transfer of long terminal repeat retrotransposon, Proc. Natl Acad. Sci. USA, vol.96, pp.12621-12625, 1999. ,
Taxonomy, molecular phylogeny and evolution of plant reverse transcribing viruses (family Caulimoviridae) inferred from full-length genome and reverse transcriptase sequences, Arch. Virol, vol.153, pp.1085-1102, 2008. ,
URL : https://hal.archives-ouvertes.fr/halsde-00469426
Diverse groups of plant RNA and DNA viruses share related movement proteins that may possess chaperone-like activity, J. Gen. Virol, vol.72, pp.2895-2903, 1991. ,
Gypsy endogenous retrovirus maintains potential infectivity in several species of Drosophilids, BMC Evol. Biol, vol.8, p.302, 2008. ,
Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila, BMC Evol. Biol, vol.9, p.279, 2009. ,