The Pfam protein families database, Nucleic Acids Res, vol.38, pp.211-233, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01294685
PRINTS and its automatic supplement, prePRINTS, Nucleic Acids Res, vol.31, pp.400-402, 2003. ,
PROSITE, a protein domain database for functional characterization and annotation, Nucleic Acids Res, vol.38, pp.161-166, 2010. ,
SMART 6: recent updates and new developments, Nucleic Acids Res, vol.37, pp.229-232, 2009. ,
The ProDom database of protein domain families: more emphasis on 3D, Nucleic Acids Res, vol.33, pp.212-215, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00427815
PIRSF family classification system for protein functional and evolutionary analysis, Evolutionary Bioinformatics Online, vol.2, pp.197-209, 2006. ,
SUPERFAMILY 1.75 including a domain-centric gene ontology method, Nucleic Acids Res, vol.39, pp.427-434, 2011. ,
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium, Nucleic Acids Res, vol.38, pp.204-210, 2010. ,
Gene3D: merging structure and function for a Thousand genomes, Nucleic Acids Res, vol.38, pp.296-300, 2010. ,
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes, Nucleic Acids Res, vol.35, pp.260-264, 2007. ,
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot, Nucleic Acids Res, vol.37, pp.471-478, 2009. ,
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium, Nat. Genet, vol.25, pp.25-29, 2000. ,
MEROPS: the peptidase database, Nucleic Acids Res, vol.38, pp.227-233, 2010. ,
The IntAct molecular interaction database in 2010, Nucleic Acids Res, vol.38, pp.525-531, 2010. ,
The ENZYME database in 2000, Nucleic Acids Res, vol.28, pp.304-305, 2000. ,
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data, Nucleic Acids Res, vol.35, pp.301-303, 2007. ,
, Ongoing and future developments at the Universal Protein Resource, The UniProt Consortium, vol.39, pp.214-219, 2010.
InterProScan: protein domains identifier, Nucleic Acids Res, vol.33, pp.116-120, 2005. ,
A new bioinformatics analysis tools framework at EMBL-EBI, Nucleic Acids Res, vol.38, pp.695-699, 2010. ,
Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development, BMC Bioinformatics, vol.11, p.530, 2010. ,
Enzyme-specific profiles for genome annotation: PRIAM, Nucleic Acids Res, vol.31, pp.6633-6639, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-00427393
Reactome knowledgebase of human biological pathways and processes, Methods Mol. Biol, vol.694, pp.49-61, 2011. ,
KEGG for representation and analysis of molecular networks involving diseases and drugs, Nucleic Acids Res, vol.38, pp.355-360, 2010. ,
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases, Nucleic Acids Res, vol.38, pp.473-479, 2010. ,
UniPathway: a resource for the exploration and annotation of metabolic pathways, Nucleic Acids Res, vol.40, pp.761-769, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00746856
The InterPro BioMart: federated query and web service access to the InterPro Resource, Database, 2011. ,
Integrating biological data-the Distributed Annotation System, BMC bioinformatics, vol.9, issue.S3, 2008. ,
Dasty3, a WEB Framework for DAS, Bioinformatics, vol.27, pp.2616-2617, 2011. ,