T. Dobzhansky, Genetics and the origin of species/by Theodosius Dobzhansky, 1964.

C. Smadja and R. K. Butlin, On the scent of speciation: the chemosensory system and its role in premating isolation, Heredity, vol.102, issue.1, pp.77-97, 2008.
URL : https://hal.archives-ouvertes.fr/hal-01945569

P. Karlson and M. Luscher, Pheromones': a new term for a class of biologically active substances, Nature, vol.183, issue.4653, pp.55-56, 1959.

M. Tegoni, P. Pelosi, F. Vincent, S. Spinelli, V. Campanacci et al., Mammalian odorant binding proteins, Biochimica et Biophysica Acta (BBA). Protein Structure and Molecular Enzymology, vol.1482, issue.1-2, pp.229-240, 2000.

P. Pelosi, The role of perireceptor events in vertebrate olfaction, Cell Mol Life Sci, vol.58, issue.4, pp.503-509, 2001.

J. P. Signoret, Reproductive behaviour of pigs, J Reprod Fertil Suppl, vol.11, issue.11, 1970.

R. J. Beynon and J. L. Hurst, Multiple roles of major urinary proteins in the house mouse, Mus domesticus, Biochem Soc Trans, vol.31, pp.142-146, 2003.

S. Marchese, D. Pes, A. Scaloni, V. Carbone, and P. Pelosi, Lipocalins of boar salivary glands binding odours and pheromones, Eur J Biochem, vol.252, issue.3, pp.563-568, 1998.

G. C. Perry, R. Patterson, H. Macfie, C. Stinson, and . Secretion, Animal Production, vol.31, pp.191-199, 1980.

G. Guiraudie, P. Pageat, A. H. Cain, I. Madec, and P. Meillour, Functional Characterization of Olfactory Binding Proteins for Appeasing Compounds and Molecular Cloning in the Vomeronasal Organ of Prepubertal Pigs, Chem Senses, vol.28, issue.7, pp.609-619, 2003.
URL : https://hal.archives-ouvertes.fr/hal-01807800

A. Scaloni, S. Paolini, A. Brandazza, M. Fantacci, C. Bottiglieri et al., Purification, cloning and characterisation of odorant-and pheromone-binding proteins from pig nasal epithelium, Cell Mol Life Sci, vol.58, issue.5-6, pp.823-834, 2001.

D. R. Flower, The lipocalin protein family: structure and function, Biochem J, vol.318, pp.1-14, 1996.

S. Spinelli, F. Vincent, P. Pelosi, M. Tegoni, and C. Cambillau, Boar salivary lipocalin. Three-dimensional X-ray structure and androsterol/ androstenone docking simulations, Eur J Biochem, vol.269, issue.10, pp.2449-2456, 2002.

D. Loebel, A. Scaloni, S. Paolini, C. Fini, L. Ferrara et al., Cloning, post-translational modifications, heterologous expression and ligandbinding of boar salivary lipocalin, Biochem J, vol.350, pp.369-379, 2000.

K. Touhara and L. B. Vosshall, Sensing Odorants and Pheromones with Chemosensory Receptors, Annual Review of Physiology, vol.71, issue.1, pp.307-332, 2009.

M. D. Ganfornina, G. Gutierrez, and M. Bastiani, A Phylogenetic Analysis of the Lipocalin Protein Family, Mol Biol Evol, vol.17, issue.1, pp.114-126, 2000.

D. W. Logan, T. F. Marton, and L. Stowers, Species Specificity in Major Urinary Proteins by Parallel Evolution, PLoS ONE, vol.3, issue.9, p.3280, 2008.

Z. D. Zhang, A. Frankish, T. Hunt, J. Harrow, and M. Gerstein, Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates, Genome Biol, vol.11, issue.3, p.26, 2010.

R. E. Green, J. Krause, A. W. Briggs, T. Maricic, U. Stenzel et al., A draft sequence of the Neandertal genome, Science, vol.2010, issue.5979, pp.710-722
URL : https://hal.archives-ouvertes.fr/hal-00920381

P. Flicek, B. L. Aken, B. Ballester, K. Beal, E. Bragin et al., Ensembl's 10th year, Nucleic Acids Res, vol.38, pp.557-562, 2009.

S. Sawyer, Statistical tests for detecting gene conversion, Mol Biol Evol, vol.6, issue.5, pp.526-538, 1989.

Z. Yang and J. P. Bielawski, Statistical methods for detecting molecular adaptation, Trends Ecol Evol, vol.15, issue.12, pp.496-503, 2000.

Z. Yang and W. J. Swanson, Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes, Mol Biol Evol, vol.19, issue.1, pp.49-57, 2002.

Z. Yang, PAML 4: phylogenetic analysis by maximum likelihood, Mol Biol Evol, vol.24, issue.8, pp.1586-1591, 2007.

A. Doron-faigenboim, A. Stern, I. Mayrose, E. Bacharach, and T. Pupko, Selecton: a server for detecting evolutionary forces at a single amino-acid site, Bioinformatics, vol.21, issue.9, pp.2101-2103, 2005.

B. Rost and C. Sander, Conservation and prediction of solvent accessibility in protein families, Proteins, vol.20, issue.3, pp.216-226, 1994.

Z. Yang and R. Nielsen, Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages, Mol Biol Evol, vol.19, issue.6, pp.908-917, 2002.

T. D. Weaver, C. C. Roseman, and C. B. Stringer, Close correspondence between quantitative-and molecular-genetic divergence times for Neandertals and modern humans, Proc Natl Acad Sci, vol.105, issue.12, pp.4645-4649, 2008.

H. Innan and F. Kondrashov, The evolution of gene duplications: classifying and distinguishing between models, Nat Rev Genet, vol.11, issue.2, pp.97-108, 2010.

R. C. Karn and C. M. Laukaitis, The mechanism of expansion and the volatility it created in three pheromone gene clusters in the mouse (Mus musculus) genome, Genome Biol Evol, vol.1, pp.494-503, 2009.

J. M. Mudge, S. D. Armstrong, K. Mclaren, R. J. Beynon, J. L. Hurst et al., Dynamic instability of the major urinary protein gene family revealed by genomic and phenotypic comparisons between C57 and 129 strain mice, Genome Biol, vol.9, issue.5, p.91, 2008.

G. Aguileta, J. P. Bielawski, and Z. Yang, Gene conversion and functional divergence in the beta-globin gene family, J Mol Evol, vol.59, issue.2, pp.177-189, 2004.

. Meslin, BMC Evolutionary Biology, vol.11, 2011.

F. A. Kondrashov, I. B. Rogozin, Y. I. Wolf, and E. V. Koonin, Selection in the evolution of gene duplications, Genome Biol, vol.3, issue.2, p.8, 2002.

R. D. Emes, S. A. Beatson, C. P. Ponting, and L. Goodstadt, Evolution and comparative genomics of odorant-and pheromone-associated genes in rodents, Genome Res, vol.14, issue.4, pp.591-602, 2004.

Y. Gilad, O. Man, and G. Glusman, A comparison of the human and chimpanzee olfactory receptor gene repertoires, Genome Res, vol.15, issue.2, pp.224-230, 2005.

A. Moreno-estrada, F. Casals, A. Ramirez-soriano, B. Oliva, F. Calafell et al., Signatures of selection in the human olfactory receptor OR5I1 gene, Mol Biol Evol, vol.25, issue.1, pp.144-154, 2008.

R. Nielsen, C. Bustamante, A. G. Clark, S. Glanowski, T. B. Sackton et al., A scan for positively selected genes in the genomes of humans and chimpanzees, PLoS Biol, vol.3, issue.6, p.170, 2005.

H. Zhuang, M. S. Chien, and H. Matsunami, Dynamic functional evolution of an odorant receptor for sex-steroid-derived odors in primates, Proceedings of the National Academy of Sciences, vol.106, issue.50, pp.21247-21251, 2009.

P. Shi, J. P. Bielawski, H. Yang, and Y. P. Zhang, Adaptive diversification of vomeronasal receptor 1 genes in rodents, J Mol Evol, vol.60, issue.5, pp.566-576, 2005.

W. L. Roelofs and A. P. Rooney, Molecular genetics and evolution of pheromone biosynthesis in Lepidoptera, Proc Natl Acad Sci, vol.100, issue.16, pp.9179-9184, 2003.

A. Cavaggioni and C. Mucignat-caretta, Major urinary proteins, alpha(2U)-globulins and aphrodisin, Biochim Biophys Acta, vol.1482, issue.1-2, pp.218-228, 2000.

N. L. Clark, J. E. Aagaard, and W. J. Swanson, Evolution of reproductive proteins from animals and plants, Reproduction, vol.131, issue.1, pp.11-22, 2006.

L. Horth, Sensory genes and mate choice: evidence that duplications, mutations, and adaptive evolution alter variation in mating cue genes and their receptors, Genomics, vol.90, issue.2, pp.159-175, 2007.

S. Dorus, P. D. Evans, G. J. Wyckoff, S. S. Choi, and B. T. Lahn, Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity, Nat Genet, vol.36, issue.12, pp.1326-1329, 2004.

P. C. Schwalie and J. Schultz, Positive selection in tick saliva proteins of the Salp15 family, J Mol Evol, vol.68, issue.2, pp.186-191, 2009.

A. R. Carson and S. W. Scherer, Identifying concerted evolution and gene conversion in mammalian gene pairs lasting over 100 million years, BMC Evol Biol, vol.9, issue.156, p.156, 2009.

J. D. Thompson, D. G. Higgins, and T. J. Gibson, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res, vol.22, issue.22, pp.4673-4680, 1994.

S. Guindon and O. Gascuel, A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood, Syst Biol, vol.52, issue.5, pp.696-704, 2003.

J. Felsenstein, Confidence Limits on Phylogenies: An Approach Using the Bootstrap. Evolution, vol.39, pp.783-791, 1985.

D. Posada, Evaluation of methods for detecting recombination from DNA sequences: empirical data. Molecular biology and evolution, vol.19, pp.708-717, 2002.

M. Suyama, D. Torrents, and P. Bork, PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments, Nucleic Acids Res, vol.34, pp.609-612, 2006.

R. Nielsen and Z. Yang, Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene, Genetics, vol.148, issue.3, pp.929-936, 1998.

Z. Yang, Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A, J Mol Evol, vol.51, issue.5, pp.423-432, 2000.

W. J. Swanson, R. Nielsen, and Q. Yang, Pervasive adaptive evolution in mammalian fertilization proteins, Mol Biol Evol, vol.20, issue.1, pp.18-20, 2003.

A. Doron-faigenboim and T. Pupko, A combined empirical and mechanistic codon model, Mol Biol Evol, vol.24, issue.2, pp.388-397, 2007.

Z. Yang, W. S. Wong, and R. Nielsen, Bayes empirical bayes inference of amino acid sites under positive selection, Molecular biology and evolution, vol.22, issue.4, pp.1107-1118, 2005.

J. Zhang, R. Nielsen, and Z. Yang, Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level, Mol Biol Evol, vol.22, issue.12, pp.2472-2479, 2005.

S. Ahmad, M. Gromiha, H. Fawareh, and A. Sarai, ASAView: database and tool for solvent accessibility representation in proteins, BMC Bioinformatics, vol.5, issue.51, p.51, 2004.

E. F. Pettersen, T. D. Goddard, C. C. Huang, G. S. Couch, D. M. Greenblatt et al., UCSF Chimera-a visualization system for exploratory research and analysis, J Comput Chem, vol.25, issue.13, pp.1605-1612, 2004.

. Meslin, The evolutionary history of the SAL1 gene family in eutherian mammals, BMC Evolutionary Biology, vol.11, p.148, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02652257