M. A. Sacco and P. Moffett, Disease resistance genes: form and function, Molecular Plant-Microbe Interactions, pp.94-141, 2009.

G. Rairdan and P. Moffett, Brothers in arms? Common and contrasting themes in pathogen perception by plant NB-LRR and animal NACHT-LRR proteins, Microbes Infect, vol.9, pp.677-686, 2007.

M. Albrecht and F. L. Takken, Update on the domain architectures of NLRs and R proteins, Biochem Biophys Res Commun, vol.339, pp.459-462, 2006.

W. Ma and D. S. Guttman, Evolution of prokaryotic and eukaryotic virulence effectors, Curr Opin Plant Biol, vol.11, pp.412-419, 2008.

S. T. Chisholm, G. Coaker, B. Day, and B. J. Staskawicz, Host-microbe interactions: shaping the evolution of the plant immune response, Cell, vol.124, pp.803-814, 2006.

J. L. Dangl and J. D. Jones, Plant pathogens and integrated defence responses to infection, Nature, vol.411, pp.826-833, 2001.

R. A. Van-der-hoorn and S. Kamoun, From Guard to Decoy: a new model for perception of plant pathogen effectors, Plant Cell, vol.20, pp.2009-2017, 2008.

E. L. Davis, R. S. Hussey, and T. J. Baum, Getting to the roots of parasitism by nematodes, Trends Parasitol, vol.20, pp.134-141, 2004.

B. Vanholme, D. Meutter, J. Tytgat, T. Van-montagu, M. Coomans et al., Secretions of plant-parasitic nematodes: a molecular update, Gene, vol.332, pp.13-27, 2004.

E. Grenier, V. Blok, J. Jones, D. Fouville, and D. Mugniery, Identification of gene expression differences between Globodera pallida and G. 'mexicana' by suppression subtractive hybridization, Molecular-Plant-Pathology, vol.3, pp.217-226, 2002.

V. M. Williamson and A. Kumar, Nematode resistance in plants: the battle underground, Trends Genet, vol.22, pp.396-403, 2006.

A. Bendahmane, K. Kanyuka, and D. C. Baulcombe, The Rx gene from potato controls separate virus resistance and cell death responses, Plant Cell, vol.11, pp.781-792, 1999.

E. A. Van-der-vossen, J. N. Van-der-voort, K. Kanyuka, A. Bendahmane, and H. Sandbrink, Homologues of a single resistance-gene cluster in potato confer resistance to distinct pathogens: a virus and a nematode, Plant J, vol.23, pp.567-576, 2000.

F. K. Arntzen, J. H. Vinke, and C. J. Hoogendoorn, Inheritance, level and origin of resistance to Globodera pallida in the potato cultivar Multa, derived from Solanum tuberosum ssp. andigena CPC 1673, Fundamental and Applied Nematology, vol.16, pp.155-162, 1993.

M. A. Sacco, S. Mansoor, and P. Moffett, A RanGAP protein physically interacts with the NB-LRR protein Rx, and is required for Rx-mediated viral resistance, Plant J, vol.52, pp.82-93, 2007.

W. I. Tameling and D. C. Baulcombe, Physical Association of the NB-LRR Resistance Protein Rx with a Ran GTPase-Activating Protein Is Required for Extreme Resistance to Potato virus X, Plant Cell, vol.19, pp.1682-1694, 2007.

G. J. Rairdan and P. Moffett, Distinct domains in the ARC region of the potato resistance protein Rx mediate LRR binding and inhibition of activation, Plant Cell, vol.18, pp.2082-2093, 2006.

A. Blanchard, M. Esquibet, D. Fouville, and E. Grenier, Ranbpm homologue genes characterised in the cyst nematodes Globodera pallida and Globodera 'mexicana', Physiological-and-Molecular-Plant-Pathology, vol.67, pp.15-22, 2005.
URL : https://hal.archives-ouvertes.fr/hal-02676947

S. Rehman, W. Postma, T. Tytgat, P. Prins, and L. Qin, A Secreted SPRY Domain-Containing Protein (SPRYSEC) from the Plant-Parasitic Nematode Globodera rostochiensis Interacts with a CC-NB-LRR Protein from a Susceptible Tomato, Mol Plant Microbe Interact, vol.22, pp.330-340, 2009.

L. Qin, H. Overmars, J. Helder, H. Popeijus, and J. R. Van-der-voort, An efficient cDNA-AFLP-based strategy for the identification of putative pathogenicity factors from the potato cyst nematode Globodera rostochiensis, Mol Plant Microbe Interact, vol.13, pp.830-836, 2000.

L. C. Murrin and J. N. Talbot, RanBPM, a scaffolding protein in the immune and nervous systems, J Neuroimmune Pharmacol, vol.2, pp.290-295, 2007.

R. P. Menon, T. J. Gibson, and A. Pastore, The C terminus of fragile X mental retardation protein interacts with the multi-domain Ran-binding protein in the microtubule-organising centre, J Mol Biol, vol.343, pp.43-53, 2004.

X. M. Xu, Q. Zhao, T. Rodrigo-peiris, J. Brkljacic, and C. S. He, RanGAP1 is a continuous marker of the Arabidopsis cell division plane, Proc Natl Acad Sci U S A, vol.105, pp.18637-18642, 2008.

D. A. Rhodes, B. De-bono, and J. Trowsdale, Relationship between SPRY and B30.2 protein domains. Evolution of a component of immune defence, Immunology, vol.116, pp.411-417, 2005.

R. Nielsen and Z. Yang, Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene, Genetics, vol.148, pp.929-936, 1998.

Z. Yang and J. P. Bielawski, Statistical methods for detecting molecular adaptation, Trends Ecol Evol, vol.15, pp.496-503, 2000.

J. Rouppe-van-der-voort, P. Wolters, R. Folkertsma, R. Hutten, and P. Van-zanvoort, Mapping of the cyst nematode resistance locus Gpa2 in potato using a strategy based on comigrating AFLP markers, Theor Appl Genet, vol.95, pp.874-880, 1997.

P. N. Dodds, G. J. Lawrence, A. M. Catanzariti, M. A. Ayliffe, and J. G. Ellis, The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells, Plant Cell, vol.16, pp.755-768, 2004.

R. L. Allen, P. D. Bittner-eddy, L. J. Grenville-briggs, J. C. Meitz, and A. P. Rehmany, Host-parasite coevolutionary conflict between Arabidopsis and downy mildew, Science, vol.306, pp.1957-1960, 2004.

G. Farnham and D. C. Baulcombe, Artificial evolution extends the spectrum of viruses that are targeted by a disease-resistance gene from potato, Proc Natl Acad Sci U S A, vol.103, pp.18828-18833, 2006.

B. C. Kang, I. Yeam, and M. M. Jahn, Genetics of plant virus resistance, Annu Rev Phytopathol, vol.43, pp.581-621, 2005.

S. Patel, A. Rose, T. Meulia, R. Dixit, and R. J. Cyr, Arabidopsis WPPdomain proteins are developmentally associated with the nuclear envelope and promote cell division, Plant Cell, vol.16, pp.3260-3273, 2004.

J. Caplan, M. Padmanabhan, and S. P. Dinesh-kumar, Plant NB-LRR immune receptors: from recognition to transcriptional reprogramming, Cell Host Microbe, vol.3, pp.126-135, 2008.

D. Mackey, Y. Belkhadir, J. M. Alonso, J. R. Ecker, and J. L. Dangl, Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance, Cell, vol.112, pp.379-389, 2003.

D. Mackey, B. F. Holt, A. Wiig, and J. L. Dangl, RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis, Cell, vol.108, pp.743-754, 2002.

M. J. Axtell, S. T. Chisholm, D. Dahlbeck, and B. J. Staskawicz, Genetic and molecular evidence that the Pseudomonas syringae type III effector protein AvrRpt2 is a cysteine protease, Mol Microbiol, vol.49, pp.1537-1546, 2003.

D. Weinthal and T. Tzfira, Imaging protein-protein interactions in plant cells by bimolecular fluorescence complementation assay, Trends Plant Sci, 2009.

T. J. Magliery, C. G. Wilson, W. Pan, D. Mishler, and I. Ghosh, Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism, J Am Chem Soc, vol.127, pp.146-157, 2005.

C. A. Gleason, Q. L. Liu, and V. M. Williamson, Silencing a candidate nematode effector gene corresponding to the tomato resistance gene Mi-1 leads to acquisition of virulence, Mol Plant Microbe Interact, vol.21, pp.576-585, 2008.

R. B. Abramovitch, Y. J. Kim, S. Chen, M. B. Dickman, and G. B. Martin, Pseudomonas type III effector AvrPtoB induces plant disease susceptibility by inhibition of host programmed cell death, EMBO Journal, vol.22, pp.60-69, 2003.

R. W. Jackson, E. Athanassopoulos, G. Tsiamis, J. W. Mansfield, and A. Sesma, Identification of a pathogenicity island, which contains genes for virulence and avirulence, on a large native plasmid in the bean pathogen Pseudomonas syringae pathovar phaseolicola, Proc Natl Acad Sci U S A, vol.96, pp.10875-10880, 1999.

C. Ritter and J. L. Dangl, Interference between Two Specific Pathogen Recognition Events Mediated by Distinct Plant Disease Resistance Genes, Plant Cell, vol.8, pp.251-257, 1996.

G. J. Lawrence, G. Mayo, and K. W. Shepherd, Interactions Between Genes Controlling Pathogenicity in the Flax Rust Fungus, Phytopathology, vol.71, pp.12-19, 1981.

J. E. Luck, G. J. Lawrence, P. N. Dodds, K. W. Shepherd, and J. G. Ellis, Regions outside of the leucine-rich repeats of flax rust resistance proteins play a role in specificity determination, Plant Cell, vol.12, pp.1367-1377, 2000.

K. H. Sohn, R. Lei, A. Nemri, and J. D. Jones, The downy mildew effector proteins ATR1 and ATR13 promote disease susceptibility in Arabidopsis thaliana, Plant Cell, vol.19, pp.4077-4090, 2007.

G. Tsiamis, J. W. Mansfield, R. Hockenhull, R. W. Jackson, and A. Sesma, Cultivar-specific avirulence and virulence functions assigned to avrPphF in, 2000.

, Pseudomonas syringae pv. phaseolicola, the cause of bean halo-blight disease, Embo J, vol.19, pp.3204-3214

B. A. Mcdonald and C. Linde, Pathogen population genetics, evolutionary potential, and durable resistance, Annu Rev Phytopathol, vol.40, pp.349-379, 2002.

D. Picard, O. Plantard, M. Scurrah, and D. Mugniery, Inbreeding and population structure of the potato cyst nematode (Globodera pallida) in its native area (Peru), Mol Ecol, vol.13, pp.2899-2908, 2004.

O. Plantard and C. Porte, Population genetic structure of the sugar beet cyst nematode Heterodera schachtii: a gonochoristic and amphimictic species with highly inbred but weakly differentiated populations, Mol Ecol, vol.13, pp.33-41, 2004.

A. P. Rehmany, A. Gordon, L. E. Rose, R. L. Allen, and M. R. Armstrong, Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines, Plant Cell, vol.17, pp.1839-1850, 2005.

P. N. Dodds, G. J. Lawrence, A. M. Catanzariti, T. Teh, and C. I. Wang, Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes, Proc Natl Acad Sci U S A, vol.103, pp.8888-8893, 2006.

D. Picard, T. Sempere, and O. Plantard, A northward colonisation of the Andes by the potato cyst nematode during geological times suggests multiple host-shifts from wild to cultivated potatoes, Mol Phylogenet Evol, vol.42, pp.308-316, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00325392

J. Ade, B. J. Deyoung, C. Golstein, and R. W. Innes, Indirect activation of a plant nucleotide binding site-leucine-rich repeat protein by a bacterial protease, Proc Natl Acad Sci U S A, vol.104, pp.2531-2536, 2007.

J. L. Caplan, P. Mamillapalli, T. M. Burch-smith, K. Czymmek, and S. P. Dinesh-kumar, Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector, Cell, vol.132, pp.449-462, 2008.

T. S. Mucyn, A. Clemente, V. M. Andriotis, A. L. Balmuth, and G. E. Oldroyd, The tomato NBARC-LRR protein Prf interacts with Pto kinase in vivo to regulate specific plant immunity, Plant Cell, vol.18, pp.2792-2806, 2006.

J. G. Ellis, P. N. Dodds, and G. J. Lawrence, Flax rust resistance gene specificity is based on direct resistance-avirulence protein interactions, Annu Rev Phytopathol, vol.45, pp.289-306, 2007.

S. Qu, G. Liu, B. Zhou, M. Bellizzi, and L. Zeng, The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice, Genetics, vol.172, pp.1901-1914, 2006.

Q. H. Shen, F. Zhou, S. Bieri, T. Haizel, and K. Shirasu, Recognition specificity and RAR1/SGT1 dependence in barley Mla disease resistance genes to the powdery mildew fungus, Plant Cell, vol.15, pp.732-744, 2003.

H. Ueda and Y. Yamaguchi, Direct interaction between the tobacco mosaic virus helicase domain and the ATP-bound resistance protein, N factor during the hypersensitive response in tobacco plants, Plant Mol Biol, vol.61, pp.31-45, 2006.

P. Moffett, G. Farnham, J. Peart, and D. C. Baulcombe, Interaction between domains of a plant NBS-LRR protein in disease resistance-related cell death, EMBO J, vol.21, pp.4511-4519, 2002.

G. H. Zhang, V. Gurtu, and S. R. Kain, An enhanced green fluorescent protein allows sensitive detection of gene transfer in mammalian cells, Biochemical and Biophysical Research Communications, vol.227, pp.707-711, 1996.

T. Tzfira, G. W. Tian, B. Lacroix, S. Vyas, and J. Li, pSAT vectors: a modular series of plasmids for autofluorescent protein tagging and expression of multiple genes in plants, Plant Mol Biol, vol.57, pp.503-516, 2005.

F. A. Van-engelen, J. W. Molthoff, A. J. Conner, J. P. Nap, and A. Pereira, pBINPLUS: an improved plant transformation vector based on pBIN19, Transgenic Res, vol.4, pp.288-290, 1995.

F. Corpet, Multiple sequence alignment with hierarchical clustering, Nucleic Acids Res, vol.16, pp.10881-10890, 1988.
URL : https://hal.archives-ouvertes.fr/hal-02728178

S. Kumar, K. Tamura, and M. Nei, MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment, Brief Bioinform, vol.5, pp.150-163, 2004.

Z. Yang, PAML: a program package for phylogenetic analysis by maximum likelihood, Comput Appl Biosci, vol.13, pp.555-556, 1997.

S. L. Pond, S. D. Frost, and S. V. Muse, HyPhy: hypothesis testing using phylogenies, Bioinformatics, vol.21, pp.676-679, 2005.

X. Yang, T. R. Belin, and W. J. Boscardin, Imputation and variable selection in linear regression models with missing covariates, Biometrics, vol.61, pp.498-506, 2005.