T. M. Annesley, Ion suppression in mass spectrometry, Clinical Chemistry, vol.49, issue.7, pp.1041-1044, 2003.

A. V. Antonov, S. Dietmann, P. Wong, and H. W. Mewes, , 2009.

, Ticl-a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics, The FEBS Journal, vol.276, issue.7, pp.2084-2094

K. F. Aoki and M. Kanehisa, Using the KEGG database resource, Current Protocols in Bioinformatics, issue.1, 2005.

M. Arita, Metabolic reconstruction using shortest paths. Simulation Practice and Theory, vol.9, pp.109-125, 2000.

M. Arita, The metabolic world of Escherichia coli is not small, Proceedings of the National Academy of Sciences of the United States of America, vol.101, pp.1543-1547, 2004.

M. P. Barrett, D. W. Boykin, R. Brun, and R. R. Tidwell, Human African trypanosomiasis: Pharmacological re-engagement with a neglected disease, British Journal of Pharmacology, vol.152, issue.8, pp.1155-1171, 2007.

R. Bourqui, L. Cottret, V. Lacroix, D. Auber, P. Mary et al., Metabolic network visualization eliminating node redundance and preserving metabolic pathways, BMC Systems Biology, vol.1, p.29, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00434765

R. Breitling, A. R. Pitt, and M. P. Barrett, Precision mapping of the metabolome, Trends in Biotechnology, vol.24, issue.12, pp.543-548, 2006.

N. B. Cech and C. G. Enke, Practical implications of some recent studies in electrospray ionization fundamentals, Mass Spectrometry Reviews, vol.20, issue.6, pp.362-387, 2001.

B. Chukualim, N. Peters, C. Fowler, and M. Berriman, Trypanocyc-a metabolic pathway database for trypanosoma brucei, BMC Bioinformatics, vol.9, p.5, 2008.
URL : https://hal.archives-ouvertes.fr/hal-02803549

O. Fiehn, Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks, Comparative and Functional Genomics, vol.2, issue.3, pp.155-168, 2001.

T. Handorf, N. Christian, O. Ebenhöh, and D. Kahn, An environmental perspective on metabolism, Journal of Theoretical Biology, vol.252, issue.3, pp.530-537, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00428159

T. Handorf, O. Ebenhöh, and R. Heinrich, Expanding metabolic networks: Scopes of compounds, robustness, and evolution, Journal of Molecular Evolution, vol.61, issue.4, pp.498-512, 2005.

H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, and A. L. Barabási, The large-scale organization of metabolic networks, Nature, issue.6804, pp.651-654, 2000.

A. Kamleh, M. P. Barrett, D. Wildridge, R. J. Burchmore, R. A. Scheltema et al., Metabolomic profiling using orbitrap Fourier transform mass spectrometry with hydrophilic interaction chromatography: A method with wide applicability to analysis of biomolecules, vol.22, pp.1912-1918, 2008.

M. Kanehisa, S. Goto, S. Kawashima, Y. Okuno, and M. Hattori, The KEGG resource for deciphering the genome, Nucleic Acids Research, vol.32, pp.277-280, 2004.

P. D. Karp, S. Paley, and P. Romero, The pathway tools software, Bioinformatics, vol.18, issue.1, pp.225-238, 2002.

P. D. Karp, Expansion of the BioCyc collection of pathway/genome databases to 160 genomes, Nucleic Acids Research, vol.33, issue.19, pp.6083-6089, 2005.

V. Lacroix, L. Cottret, P. Thébault, and M. Sagot, An introduction to metabolic networks and their structural analysis, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00355497

, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.18, issue.1, pp.97-99

S. Okuda, T. Yamada, M. Hamajima, M. Itoh, T. Katayama et al., KEGG atlas mapping for global analysis of metabolic pathways, Nucleic Acids Research, vol.36, pp.423-426, 2008.

S. M. Paley and P. D. Karp, The pathway tools cellular overview diagram and Omics viewer, Nucleic Acids Research, vol.34, issue.13, pp.3771-3778, 2006.

S. A. Rahman, P. Advani, R. Schunk, R. Schrader, and D. Schomburg, Metabolic pathway analysis web service (pathway hunter tool at cubic), Bioinformatics, vol.21, issue.7, pp.1189-1193, 2005.

P. Romero, J. Wagg, M. L. Green, D. Kaiser, M. Krummenacker et al., Computational prediction of human metabolic pathways from the complete human genome, Genome Biology, vol.6, issue.1, p.2, 2005.

V. P. Shah, K. K. Midha, J. W. Findlay, H. M. Hill, J. D. Hulse et al., Bioanalytical method validation-a revisit with a decade of progress, Pharmaceutical Research, vol.17, issue.12, pp.1551-1557, 2000.

P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang et al., Cytoscape: A software environment for integrated models of biomolecular interaction networks, 2003.

, Genome Research, vol.13, issue.11, pp.2498-2504

K. Suhre and P. Schmitt-kopplin, Masstrix: Mass translator into pathways, Nucleic Acids Research, vol.36, pp.481-484, 2008.

W. Windig, N. B. Gallagher, J. M. Shaver, and B. M. Wise, A new approach for interactive self-modeling mixture analysis, vol.77, pp.85-96, 2005.