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EUGENE'HOM: a generic similarity-based gene finder using multiple homologous sequences Sylvain Foissac 1ac8120e3a510305979ce2d267e27ab4 inrae.fr sylvainfoissac 744914 32464-744914 https://orcid.org/0000-0002-2631-5356 https://www.idref.fr/085595896 Philippe Bardou 1430b2d904925f92733231889c890161 inrae.fr philippe-bardou 737785 50293-737785 https://orcid.org/0000-0002-0004-0251 Annick Moisan 994309-0 Marie-Josée Cros a04040089e5f860f75b60bb3b7383be7 inrae.fr marie-josee-cros 735778 10031-735778 https://orcid.org/0000-0002-6395-5563 https://scholar.google.ca/citations?user=BKeAyPgAAAAJ&hl=fr Thomas Schiex 5099f50b8e39582a8eab7f7ac4528cbf inrae.fr thomas-schiex 734846 416-734846 https://orcid.org/0000-0001-6049-3415 https://www.idref.fr/057033935 https://viaf.org/viaf/19810095 http://isni.org/isni/0000000001674841 Migration ProdInra 9e5ed7d56b52b3d4383123b1ffb42236 inrae.fr 2020-05-31 17:42:17 2026-03-18 14:22:02 2020-05-31 17:42:19 2003 2020-05-31 inra_etatDocument_local_VE inra_publicVise_local_SC contributor Migration ProdInra 9e5ed7d56b52b3d4383123b1ffb42236 inrae.fr CCSD hal-02675508 https://hal.inrae.fr/hal-02675508 foissac:hal-02675508 <i>Nucleic Acids Research</i>, 2003, 31 (13), pp.3742-3745. <a target="_blank" href="https://dx.doi.org/10.1093/nar/gkg586">⟨10.1093/nar/gkg586⟩</a> Nucleic Acids Research, 2003, 31 (13), pp.3742-3745. ⟨10.1093/nar/gkg586⟩ HAL Authorization Ecole Nationale Supérieure Agronomique de Toulouse INRA - Institut national de la recherche agronomique Archive ouverte en agrobiosciences Institut National de Recherche en Agriculture, Alimentation et Environnement Département GA INRAE Génétique Physiologie et Systèmes d'Elevage INRAE Occitanie Toulouse Toulouse - INP Université de Toulouse / Toulouse INP Université de Toulouse / Toulouse INP TEST3-HALCNRS Département MathNum Unité de Mathématiques et Informatique Appliquées de Toulouse École Nationale Vétérinaire de Toulouse Test MathNum International No Yes EUGENE'HOM: a generic similarity-based gene finder using multiple homologous sequences Sylvain Foissac 1ac8120e3a510305979ce2d267e27ab4 inrae.fr sylvainfoissac 744914 32464-744914 https://orcid.org/0000-0002-2631-5356 https://www.idref.fr/085595896 Philippe Bardou 1430b2d904925f92733231889c890161 inrae.fr philippe-bardou 737785 50293-737785 https://orcid.org/0000-0002-0004-0251 Annick Moisan 994309-0 Marie-Josée Cros a04040089e5f860f75b60bb3b7383be7 inrae.fr marie-josee-cros 735778 10031-735778 https://orcid.org/0000-0002-6395-5563 https://scholar.google.ca/citations?user=BKeAyPgAAAAJ&hl=fr Thomas Schiex 5099f50b8e39582a8eab7f7ac4528cbf inrae.fr thomas-schiex 734846 416-734846 https://orcid.org/0000-0001-6049-3415 https://www.idref.fr/057033935 https://viaf.org/viaf/19810095 http://isni.org/isni/0000000001674841 1850 0305-1048 1362-4962 Nucleic Acids Research Oxford University Press 31 13 3742-3745 2003 10.1093/nar/gkg586 257213 12824408 http://nar.oxfordjournals.org/ English Life Sciences [q-bio] Computer Science [cs] Mathematics [math] Journal articles Journal articles Journal articles

EUGE`NE’HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGE` NE’HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGE`NE’HOM to handle sequences from a variety of organisms. The current target of EUGE`NE’HOM is plant sequences. The EUGE`NE’HOM web site is available at http://genopole. toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.

Génétique Physiologie et Systèmes d'Elevage GenPhySE 2014-01-01 2019-12-31

INRA Auzeville - 24, chemin de Borde-Rouge -Auzeville Tolosane31326 Castanet Tolosan

http://genphyse.toulouse.inra.fr/ Unité de Biométrie et Intelligence Artificielle (ancêtre de MIAT) UBIA 2004-01-01 2012-12-31

Centre Inra de Toulouse Midi-Pyrénées Chemin de Borde-Rouge-Auzeville BP 52627 F-31326 Castanet-Tolosan cedex

http://mia.toulouse.inra.fr/index.php?id=202 https://ror.org/01x3gbx83 Institut National de la Recherche Agronomique INRA 1946-05-18 2019-12-31

http://www.inra.fr https://ror.org/03m3gzv89 École nationale vétérinaire de Toulouse ENVT

23 chemin des Capelles - 31076 Toulouse Cedex

https://envt.fr/ 026388820 0000000121766169 https://ror.org/033p9g875 Institut National Polytechnique (Toulouse) Toulouse INP

https://www.inp-toulouse.fr/ https://ror.org/017tgbk05 Communauté d'universités et établissements de Toulouse Comue de Toulouse

41 Allée Jules Guesde, 31000 Toulouse

https://www.univ-toulouse.fr/ 0000 0001 2182 8729 https://ror.org/03d5w9863 École nationale supérieure agronomique de Toulouse ENSAT, INP-ENSAT, AgroToulouse, INP-AgroToulouse

https://www.ensat.fr/fr/index.html