R. Calderone, Taxonomy and biology of Candida, Candida and Candidiasis, pp.307-325, 2002.

R. P. Wenzel, Nosocomial candidemia: risk factors and attributable mortality, Clin. Infect. Dis, vol.20, pp.1531-1534, 1995.

M. A. Pfaller, R. N. Jones, G. V. Doern, H. S. Sader, S. A. Messer et al., Bloodstream infections due to Candida species: SENTRY antimicrobial surveillance program in North America and Latin America, Antimicrob. Agents Chemother, vol.44, pp.747-751, 1997.

J. Berman and P. E. Sudbery, Candida albicans: a molecular revolution built on lessons from budding yeast, Nature Rev. Genet, vol.3, pp.918-930, 2002.

T. Jones, N. A. Federspiel, H. Chibana, J. Dungan, S. Kalman et al., The diploid genome sequence of Candida albicans, Proc. Natl Acad. Sci. USA, vol.101, pp.7329-7334, 2004.

I. Moszer, L. M. Jones, S. Moreira, C. Fabry, and A. Danchin, SubtiList: the reference database for the Bacillus subtilis genome, Nucleic Acids Res, vol.30, pp.62-65, 2002.

L. Frangeul, P. Glaser, C. Rusniok, C. Buchrieser, E. Duchaud et al., CAAT-Box, contigs-assembly and annotation tool-box for genome sequencing projects, Bioinformatics, vol.20, pp.790-797, 2004.

A. V. Lukashin and M. Borodovsky, GeneMark.hmm: new solutions for gene finding, Nucleic Acids Res, vol.26, pp.1107-1115, 1998.

D. L. Wheeler, D. M. Church, R. Edgar, S. Federhen, W. Helmberg et al., Database resources of the National Center for Biotechnology Information: update, Nucleic Acids Res, vol.32, pp.35-40, 2004.

S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. Lipman, Basic local alignment search tool, J. Mol. Biol, vol.215, pp.403-410, 1990.

K. Rutherford, J. Parkhill, J. Crook, T. Horsnell, P. Rice et al., Artemis: sequence visualization and annotation, Bioinformatics, vol.16, pp.944-945, 2000.

T. M. Lowe and S. R. Eddy, tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence, Nucleic Acids Res, vol.25, pp.955-964, 1997.

K. R. Christie, S. Weng, R. Balakrishnan, M. C. Costanzo, K. Dolinski et al., Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms, Nucleic Acids Res, vol.32, pp.311-314, 2004.

A. Bateman, L. Coin, R. Durbin, R. D. Finn, V. Hollich et al., The Pfam protein families database, Nucleic Acids Res, vol.32, pp.138-141, 2004.
URL : https://hal.archives-ouvertes.fr/hal-01294685

A. Krogh, B. Larsson, G. Von-heijne, and E. L. Sonnhammer, Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes, J. Mol. Biol, vol.305, pp.567-580, 2001.

H. Nielsen, J. Engelbrecht, S. Brunak, and G. Von-heijne, Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites, Protein Eng, vol.10, pp.1-6, 1997.

F. Tekaia, G. Blandin, A. Malpertuy, B. Llorente, P. Durrens et al., Genomic exploration of the hemiascomycetous yeasts: 3. Methods and strategies used for sequence analysis and annotation, FEBS Lett, vol.487, pp.17-30, 2000.
URL : https://hal.archives-ouvertes.fr/hal-02696093

T. L. Bailey and M. Gribskov, Combining evidence using p-values: application to sequence homology searches, Bioinformatics, vol.14, pp.48-54, 1998.

A. J. Enright, S. Van-dongen, and C. A. Ouzounis, An efficient algorithm for large-scale detection of protein families, Nucleic Acids Res, vol.30, pp.1575-1584, 2002.

W. R. Pearson and D. J. Lipman, Improved tools for biological sequence comparison, Proc. Natl Acad. Sci. USA, vol.85, pp.2444-2448, 1988.

D. Frishman, M. Mokrejs, D. Kosykh, G. Kastenmuller, G. Kolesov et al., The PEDANT genome database, Nucleic Acids Res, vol.31, pp.207-211, 2003.

C. Hertz-fowler, C. S. Peacock, V. Wood, M. Aslett, A. Kerhornou et al., GeneDB: a resource for prokaryotic and eukaryotic organisms, Nucleic Acids Res, vol.32, pp.339-343, 2004.

Z. Yin, D. Stead, L. Selway, J. Walker, I. Riba-garcia et al., Proteomic response to amino acid starvation in Candida albicans and Saccharomyces cerevisiae, Proteomics, vol.4, pp.2425-2436, 2004.

S. Garcia-sanchez, S. Aubert, I. Iraqui, G. Janbon, J. M. Ghigo et al., Candida albicans biofilms: a developmental state associated with specific and stable gene expression patterns, Eukaryot. Cell, vol.3, pp.536-545, 2004.
URL : https://hal.archives-ouvertes.fr/hal-02681226

C. Fradin, M. Kretschmar, T. Nichterlein, C. Gaillardin, C. Enfert et al., Stage-specific gene expression of Candida albicans in human blood, Mol. Microbiol, vol.47, pp.1523-1543, 2003.

P. D. Rogers and K. S. Barker, Genome-wide expression profile analysis reveals coordinately regulated genes associated with stepwise acquisition of azole resistance in Candida albicans clinical isolates, Antimicrob. Agents Chemother, vol.47, pp.1220-1227, 2003.

M. Karababa, A. T. Coste, B. Rognon, J. Bille, and D. Sanglard, Comparison of gene expression profiles of Candida albicans azole-resistant clinical isolates and laboratory strains exposed to drugs inducing multidrug transporters, Antimicrob. Agents Chemother, vol.48, pp.3064-3079, 2004.

B. Hube, F. Stehr, M. Bossenz, A. Mazur, M. Kretschmar et al., Secreted lipases of Candida albicans: cloning, characterisation and expression analysis of a new gene family with at least ten members, Arch. Microbiol, vol.174, pp.362-374, 2000.

M. Monod, G. Togni, B. Hube, and D. Sanglard, Multiplicity of genes encoding secreted aspartic proteinases in Candida species, Mol. Microbiol, vol.13, pp.357-368, 1994.

A. Pitarch, M. Sanchez, C. Nombela, and C. Gil, Analysis of the Candida albicans proteome. II. Protein information technology on the Net (update, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci, vol.787, pp.129-148, 2002.

R. Apweiler, A. Bairoch, C. H. Wu, W. C. Barker, B. Boeckmann et al., UniProt: the Universal Protein knowledgebase, Nucleic Acids Res, vol.32, pp.115-119, 2004.