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Communication Dans Un Congrès Année : 2019

Dynamic atlasing of gene expression domains from individual images

Eric Biot
Nicolas Arnaud
Patrick Laufs
Philippe Andrey
Jasmine Burguet

Résumé

Analyzing gene expression patterns over the tissue of an organ during growth is a means to decipher the biological mechanisms that control its shaping. For this, the organ is often sampled and imaged in different individuals at different developmental stages. However, estimating a continuous developmental process from a discrete dataset is an arduous task, especially if both size and shape evolve. We propose a strategy to: 1) integrate individual data to produce a comprehensive representation of the dynamic of expression patterns in a growing tissue, and 2) superimpose and compare patterns coming from different experimental groups. This opens the way to the integrative atlasing of expression patterns in an organ during its development. To illustrate our approach, we use a particularly challenging organ that can encompass huge shape changes during growth, the plant leaf.
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Dates et versions

hal-02733986 , version 1 (02-06-2020)

Identifiants

Citer

Mohamed Oughou, Eric Cunha, Eric Biot, Nicolas Arnaud, Patrick Laufs, et al.. Dynamic atlasing of gene expression domains from individual images. 16. IEEE International Symposium on Biomedical Imaging 2019 (ISBI1́9), Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759188⟩. ⟨hal-02733986⟩
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