C. Alabouvette, C. Olivain, and C. Steinberg, Biological Control of Plant Diseases: The European Situation, European Journal of Plant Pathology, vol.114, issue.3, pp.329-341, 2006.

. Biggs, Toward principles for enhancing the resilience of ecosystem services, Annual Review of Environment and Resources, vol.37, pp.421-448, 2012.
URL : https://hal.archives-ouvertes.fr/hal-02195157

G. Billen, L. Lassaletta, and J. Garnier, A biogeochemical view of the global agro-food system: Nitrogen flows associated with protein production, consumption and trade, Global Food Security, vol.3, issue.3-4, pp.209-219, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01194907

R. Bommarco, D. Kleijn, and S. G. Potts, Ecological intensification: harnessing ecosystem services for food security, Trends in Ecology & Evolution, pp.1-9, 2012.

R. Capone, H. Bilali, . El, P. Debs, C. Gianluigi et al., Food System Sustainability and Food Security: Connecting the Dots, Journal of Food Security, vol.2, issue.1, 2014.

P. Caron, E. Biénabe, and E. Hainzelin, Making transition towards ecological intensification of agriculture a reality: the gaps in and the role of scientific knowledge, Current Opinion in Environmental Sustainability, vol.8, pp.44-52, 2014.

M. S. Delonge, A. Miles, and L. Carlisle, Environmental Science & Policy, vol.55, pp.266-273, 2016.

M. Duru and O. Therond, Livestock system sustainability and resilience in intensive production zones: which form of ecological modernization? Regional Environmental Change, pp.1651-1665, 2014.

M. Duru, O. Therond, and M. Fares, Designing agroecological transitions; A review, Agronomy for Sustainable Development, vol.35, issue.4, pp.1237-1257, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01340332

M. Duru, O. Therond, G. Martin, R. Martin-clouaire, M. Magne et al., How to implement biodiversity-based agriculture to enhance ecosystem services: a review, Agronomy for Sustainable Development, vol.35, issue.4, pp.1259-1281, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01330032

L. Fahrig, J. Baudry, L. Brotons, F. G. Burel, T. O. Crist et al., Functional landscape heterogeneity and animal biodiversity in agricultural landscapes, Ecology Letters, vol.14, issue.2, pp.101-113, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00566627

H. Fernandez-mena, T. Nesme, and S. Pellerin, Towards an Agro-Industrial Ecology: A review of nutrient flow modelling and assessment tools in agro-food systems at the local scale, Science of the Total Environment, vol.543, pp.467-479, 2016.
URL : https://hal.archives-ouvertes.fr/hal-02633990

T. Foran, J. R. Butler, L. J. Williams, W. J. Wanjura, A. Hall et al., Taking Complexity in Food Systems Seriously: An Interdisciplinary Analysis, vol.61, pp.85-101, 2014.

K. E. Giller, J. A. Andersson, M. Corbeels, J. Kirkegaard, D. Mortensen et al., Beyond conservation agriculture, Frontiers in Plant Science, vol.6, pp.1-14, 2015.

H. C. Godfray, J. R. Beddington, I. R. Crute, L. Haddad, D. Lawrence et al., Food security: the challenge of feeding 9 billion people, Science, vol.327, pp.812-818, 2010.

R. S. Groot, A. De, R. Braat, L. Hein, L. Willemen et al., Challenges in integrating the concept of ecosystem services and values in landscape planning, management and decision making, Ecological Complexity, vol.7, issue.3, pp.260-272, 2010.

J. Ingram, Agronomist-farmer knowledge encounters: an analysis of knowledge exchange in the context of best management practices in England, Agriculture and Human Values, vol.25, issue.3, pp.405-418, 2008.

L. G. Horlings and T. K. Marsden, Towards the real green revolution? Exploring the conceptual dimensions of a new ecological modernisation of agriculture that could "feed the world, Global Environmental Change, vol.21, issue.2, pp.441-452, 2011.

M. K. Ittersum, . Van, and R. Rabbinge, Concepts in production ecology for analysis and quantification of agricultural input-output combinations, Field Crops Research, vol.52, pp.197-208, 1997.

P. Koohafkan, M. A. Altieri, and E. H. Gimenez, Green Agriculture: foundations for biodiverse, resilient and productive agricultural systems, International Journal of Agricultural Sustainability, pp.1-13, 2011.

C. Kremen, A. Iles, and C. Bacon, Diversified FS : An Agroecological, Systems-based, vol.17, 2012.

M. Kuisma, H. Kahiluoto, J. Havukainen, E. Lehtonen, M. Luoranen et al., Understanding biorefining efficiency -The case of agrifood waste, Bioresource Technology, 2012.

L. Levidow, K. Birch, and T. Papaioannou, EU agri-innovation policy : two contending visions of the bio-economy, Critical Policy Studies, vol.6, issue.1, pp.37-41, 2012.

L. Levidow, M. Pimbert, and G. Vanloqueren, Agroecological Research: Conforming-or Transforming the Dominant Agro-Food Regime? Agroecology and Sustainable Food Systems, vol.38, pp.1127-1155, 2014.

T. Marsden, From post-productionism to reflexive governance: Contested transitions in securing more sustainable food futures, Journal of Rural Studies, vol.29, pp.123-134, 2011.

T. Marsden, Towards a Real Sustainable Agri-food Security and Food Policy: Beyond the Ecological Fallacies? The Political Quarterly, vol.83, pp.139-145, 2012.

M. E. Mastrangelo, F. Weyland, S. H. Villarino, M. P. Barral, L. Nahuelhual et al., Concepts and methods for landscape multifunctionality and a unifying framework based on ecosystem services, Landscape Ecology, vol.29, issue.2, pp.345-358, 2014.

, Millennium ecosystem assessment. Ecosystems and human well-being: biodiversity synthesis. World Resources Institute, 2005.

A. Meynard, A. Messéan, F. Charlier, M. Charrier, M. L. Farès et al., Freins et leviers à la diversification des cultures Etude au niveau des exploitations agricoles et des filières, vol.20, p.52, 2013.

M. Moraine, M. Duru, and O. Therond, A social-ecological framework for analyzing and designing integrated crop-livestock systems from farm to territory levels, Renewable Agriculture and Food Systems, pp.1-14, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01602520

F. Müller, R. Hoffmann-kroll, and H. Wiggering, Indicating ecosystem integrity -Theoretical concepts and environmental requirements, Ecological Modelling, vol.130, issue.1-3, pp.13-23, 2000.

B. Müller and D. Kreuer, Ecologists Should Care about Insurance, too, Trends in Ecology & Evolution, pp.31-32, 2016.

J. I. Nassauer and P. Opdam, Design in science: extending the landscape ecology paradigm, Landscape Ecology, vol.23, issue.6, pp.633-644, 2008.

U. Niggli, Incorporating Agroecology Into Organic Research -An Ongoing Challenge, Sustainable Agriculture Research, vol.4, issue.3, pp.149-157, 2015.

L. Nitschelm, J. Aubin, M. S. Corson, V. Viaud, and C. Walter, Spatial differentiation in Life Cycle Assessment LCA applied to an agricultural territory: current practices and method development, Journal of Cleaner Production, vol.112, pp.2472-2484, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01377881

G. O'kane, What is the real cost of our food? Implications for the environment, society and public health nutrition, Public Health Nutrition, vol.15, issue.02, pp.268-276, 2012.

S. E. Park, N. A. Marshall, E. Jakku, .. M. Dowd, S. M. Howden et al., Informing adaptation responses to climate change through theories of transformation, Global Environmental Change, vol.22, issue.1, pp.115-126, 2012.

L. Philippot, J. M. Raaijmakers, P. Lemanceau, and W. H. Van-der-putten, Going back to the roots: the microbial ecology of the rhizosphere, Nature Reviews. Microbiology, vol.11, issue.11, pp.789-99, 2013.
URL : https://hal.archives-ouvertes.fr/hal-02651785

M. Pisante, F. Stagnari, M. Acutis, M. Bindi, L. Brilli et al., Conservation Agriculture and Climate Change, vol.805, pp.579-620
URL : https://hal.archives-ouvertes.fr/hal-02796321

G. C. Rains, D. M. Olson, and W. J. Lewis, Redirecting technology to support sustainable farm management practices, Agricultural Systems, vol.104, issue.4, pp.365-370, 2011.

J. Reed, J. Van-vianen, E. L. Deakin, J. Barlow, and T. Sunderland, Integrated landscape approaches to managing social and environmental issues in the tropics: learning from the past to guide the future, Glob Change Biol, 2016.

V. Seufert, N. Ramankutty, and J. A. Foley, Comparing the yields of organic and conventional agriculture, Nature, pp.229-232, 2012.

J. S. Singh, V. C. Pandey, and D. P. Singh, Efficient soil microorganisms: A new dimension for sustainable agriculture and environmental development, Ecosystems & Environment, vol.140, issue.3-4, pp.339-353, 2011.

E. G. Steingröver, W. Geertsema, and W. K. Van-wingerden, Designing agricultural landscapes for natural pest control: a transdisciplinary approach in the Hoeksche Waard (The Netherlands), Landscape Ecology, vol.25, pp.825-838, 2010.

T. Tscharntke, A. M. Klein, A. Kruess, I. Steffan-dewenter, and C. Thies, Landscape perspectives on agricultural intensification and biodiversity-ecosystem service management, Ecol Lett, vol.8, issue.8, pp.857-874, 2005.

G. Vanloqueren and P. V. Baret, How agricultural research systems shape a technological regime that develops genetic engineering but locks out agroecological innovations, Research Policy, vol.38, issue.6, pp.971-983, 2009.

W. Zhang, T. H. Ricketts, C. Kremen, K. Carney, and S. M. Swinton, Ecosystem services and dis-services to agriculture, Ecological Economics, vol.64, issue.2, pp.253-260, 2007.