B. Langmead, C. Trapnell, M. Pop, and S. L. Salzberg, Ultrafast and memory-efficient alignment of short 1 DNA sequences to the human genome, Genome biology, vol.10, p.25, 2009.

D. Y. Lee, J. J. Hayes, D. Pruss, and A. P. Wolffe, A positive role for histone acetylation in transcription factor 3 access to nucleosomal DNA, Cell, vol.72, pp.73-84, 1993.

C. Leida, A. Conesa, G. Llacer, M. L. Badenes, and G. Rios, Histone modifications and expression of DAM6 5 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner, The New, vol.6, pp.67-80, 2012.

W. Li, Y. C. Lin, Q. Li, R. Shi, C. Y. Lin et al., A robust 8 chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and 9 histone modifications in wood-forming tissue, Nature protocols, vol.9, pp.2180-2193, 2014.

J. P. Maurya and R. P. Bhalerao, Photoperiod-and temperature-mediated control of growth cessation 11 and dormancy in trees: a molecular perspective, Annals of botany, vol.120, issue.3, pp.351-360, 2017.

U. Meier, Growth stages of mono-and dicotyledonous plants 13, 2001.

N. Mimida, T. Saito, T. Moriguchi, A. Suzuki, S. Komori et al., Expression of DORMANCY-14 ASSOCIATED MADS-BOX (DAM)-like genes in apple, Biologia Plantarum, vol.59, pp.237-244, 2015.

F. Miozzo, D. Saberan-djoneidi, and V. Mezger, HSFs, Stress Sensors and Sculptors of Transcription 16 Compartments and Epigenetic Landscapes, Journal of molecular biology, vol.427, pp.3793-3816, 2015.

K. Nakabayashi, M. Okamoto, T. Koshiba, Y. Kamiya, and E. Nambara, Genome-wide profiling of stored 18 mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in 19 seed, The Plant journal : for cell and molecular biology, vol.41, pp.697-709, 2005.

G. J. Narlikar, H. Y. Fan, and R. E. Kingston, Cooperation between complexes that regulate chromatin 21 structure and transcription, Cell, vol.108, pp.475-487, 2002.

J. D. Nelson, O. Denisenko, and K. Bomsztyk, Protocol for the fast chromatin immunoprecipitation 23 (ChIP) method, Nature protocols, vol.1, pp.179-185, 2006.

A. Nishizawa, Y. Yabuta, and S. Shigeoka, Galactinol and raffinose constitute a novel function to protect 25 plants from oxidative damage, Plant Physiol, vol.147, pp.1251-1263, 2008.

R. Ophir, X. Pang, T. Halaly, J. Venkateswari, S. David et al., Gene-expression profiling of grape 27 bud response to two alternative dormancy-release stimuli expose possible links between impaired 28 mitochondrial activity, hypoxia, ethylene-ABA interplay and cell enlargement, Plant Molecular Biology, vol.29, p.403, 2009.

A. Plackett, S. Powers, N. Fernandez-garcia, T. Urbanova, Y. Takebayashi et al., , p.31

O. Nilsson, O. Ruiz-rivero, A. Phillips, Z. Wilson, S. Thomas et al., , p.32, 2012.

, Developmental Roles of the Arabidopsis Gibberellin 20-Oxidases Demonstrates That GA20ox1

, Are the Dominant Paralogs. The Plant Cell, vol.24, pp.941-960

. R-core-team, R: A language and environment for statistical computing, R 35 Foundation for Statistical Computing, 2014.

F. Ramírez, D. P. Ryan, B. Grüning, V. Bhardwaj, F. Kilpert et al., deepTools2: a next generation web server for deep-sequencing data analysis, Nucleic Acids Research, vol.37, pp.160-165, 2016.

M. M. Ricardi, R. M. Gonzalez, and N. D. Iusem, Protocol: fine-tuning of a Chromatin Immunoprecipitation 40 (ChIP) protocol in tomato, Plant methods, vol.6, p.11, 2010.

P. L. Rinne, A. Welling, J. Vahala, L. Ripel, R. Ruonala et al., Chilling of 42 dormant buds hyperinduces FLOWERING LOCUS T and recruits GA-inducible 1,3-beta-glucanases to 43 reopen signal conduits and release dormancy in Populus, The Plant cell, vol.23, issue.1, pp.130-146, 2011.

J. T. Robinson, H. Thorvaldsdottir, W. Winckler, M. Guttman, E. S. Lander et al., , p.45, 2011.

, Integrative genomics viewer, Nature biotechnology, vol.29, pp.24-26

C. S. Ross-innes, R. Stark, A. E. Teschendorff, K. A. Holmes, H. R. Ali et al., , p.47

A. R. Green, S. Ali, S. Chin, C. Palmieri, C. Caldas et al., Differential oestrogen receptor binding is 48 associated with clinical outcome in breast cancer, Nature, pp.481-485, 2012.

T. Saito, S. Bai, T. Imai, A. Ito, I. Nakajima et al., Histone modification and signalling cascade 50 of the dormancy-associated MADS-box gene, Pyrus pyrifolia) during 51 endodormancy, vol.38, pp.1157-1166, 2015.