The faba bean pan-transcriptome - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Communication Dans Un Congrès Année : 2020

The faba bean pan-transcriptome

Résumé

Faba bean (Vicia faba) is a widely adapted nitrogen fixing grain legume that produces seeds with high protein content. It is an agriculturally attractive crop with a good disease resistance profile, but targeted breeding is hampered by the lack of a reference genome and gene set. Here we develop a faba bean gene expression atlas and pan-transcriptome. The pan-transcriptome was generated using data from four different accessions (Hedin, Hiverna, 153b, 2378), including data from both aerial and root tissues. The quality and utility of the pan-transcriptome was assessed by mapping reads from accessions that had not contributed data to the pan-transcriptome. Here, the high mapping rates suggested that the pan-transcriptome represents a comprehensive faba bean reference gene set and that it will be a useful resource for differential gene expression analyses and genome annotation. In addition, the gene expression atlas provides valuable information to support gene function discovery.
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Dates et versions

hal-02790834 , version 1 (05-06-2020)

Identifiants

  • HAL Id : hal-02790834 , version 1
  • PRODINRA : 493071

Citer

Léandro Escobar-Herrera, Jonathan Kreplak, Marcin Nadzieja, Morgane Terezol, Catherine Desmetz, et al.. The faba bean pan-transcriptome. PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. ⟨hal-02790834⟩
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